Lag0001801 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001801
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	vesicle-associated protein 4-1-like
Location	chr4: 35513333 .. 35516273 (-)
RNA-Seq Expression	Lag0001801
Synteny	Lag0001801

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACTTAGCTCCACTGACTGGGTGCCATCTACCATCAGTAGGAGTAGAGACCTCCCAAAACTCCCACTTGTGCACTATCAGTGAGTTGGCAAACTTATATATTTATAGGTGTACTAATTGAACACGAGACCCGAACTGCAAATGAAATGAAATGAAATGAAATGAAAAGAAATGAAATGATATGAAATGATATGAAATGGGATGACCTAACCCTGAGGCATTTAACTCGAATAAGATGTTAAAACTTTTATTGCTACTTACTGAGTATTTTCTTAAATACTCATTCTTTTCCCTTACACACAACTGCAGGTAGAGGTAAAGGTGTACGGAACGCGTGACGGAGTGCTGCTGGGCCATGGATCTCCCTTACTTTAAGTCTTCCGCATTTTTTTTTCGTTTTGAAATTTCCCTTTGATCTTGTATTGAATGACTTACGTTTTTCCGTTTTTTGCTTGTTTGATTTACTAAAGGTTTTGTTGTGCTGTTTTAAACTGGGATCCCAGATTTAAATGTTTCGCAAATTTCTAAGTACGATTTCTTTATATGGAAATTTTCCGCCGTTCTTAGAAGTAGAATGAAATGCATGTAGTGACGGCCCTTAGGTTCTAGGCATGAAAAGTAGGGTCGTTACACTGCATGTTTGTACCATTAGGTGATTGCCGAAAGCCAAATACTTTGTAGTTGGTAAATTAGTCGTAGAGGTAAGATATATGGGGCATCTTTATTCCTTCCAATTATTATCAATAAGTGAGTTGCACGGTCTACCGAGCTATCATTTATAGTTTTATTTAAAATATAGGATTATAAATATTTGACAACAAATTATACTTTTTATGTTGGACAGAAAAAAAACGCGCTGGACATATAATGTCGGACGACAGAAAATGCGCGCTTGGAATTGTTTTTAGGCATTTCTTGGGTTTTATTCACAATTTTGGGTGAAAAATGGTTAGTGTAGTATTTTGTTCAGAGCGAAATTTTGGGTGAAGCATTTCTCTTCCTCTGTTCATGGCCAACTTTTTTCACAAGCCGAAGTTGTAGCCGCCGCCATGGTTTGTCTTCTATCTTTTCAATTTATTCTTCGAGAACAATGTCATCTGAGTTTTAAGTTAGCGATCAATCTTCAATTCCTTATTTATGTTCATTGTTGCAGGTGAAGTATTCGAGGGAACCAAACAAAATCCATCCATGAACACACGATCTGTGCAATTTCTGTCAATATTTTCTTCCCATCTTTTATGTAAAAGTTTAACTGATATTATACTTCCTTTTCCACACATATTTCAGATGCATATAGATTTCTGTCAATATTTTCTTCCCATTTTGCAATTGATCCTTAGATGCCAAAAGAGAAATTAAAAAAAATAAAATAAAATAAAAACAGACGGGAGCAGTTTTGAAGGACTTGAACCAACAAAATCCATCCATGATATTTCTACCAAAGAGGTACATTTTTGTCCTTAAGTCCCTTCTCTGCCTTCGATCATTTAGTTAATTAATTTGTTGCTTGCAGGCCCCAGAGGTTTATAGAGCTGCATGAAAACCTTTAAAGGTGTCCCAACATTTTGAGTTTGTTACTAAATTTCTTTCTTCCTTCTCTCAAGTTGTAAATGTTAATTTTTATGCACTTATCCGATTAGTACTATTTTTCAAGGTGCTGATGGTGTTCTAGTTCCAGGAGGTTTTGGTGGTAGGGGATAAGTGCATATTATGGTTATGGTTATTATCAAATTTCAAATGGGATGAAACTTTTCTATTTTATGCCTTATGCTCTTAAGCTTCCCATCAAGAAGTTTTGTTGCAAAATGTAGTTAGGTTGAAGCAACATTTCTGAAACTTGTGTATATTTTGCTCAAACTTTTGCAGGGAGAACAATTAAAGCAATCGATTGATTTGGATCTTTTGGATCAAACTACTATAATTCTTTGTCTAGATATACTCATTAGGTTTACAGGACTGTGTTGTTATTTCCTAACTCATCAGTTTCATTGGCTTTACAAGACTGTGTTGTTGGGTTACTGTTCACTTTGTTTCCAGTACTGGGGTGGGAATTCTGGTATTCTTGAAGGAGTGTGATATCCATGAGTAAAGTGCAAGTATAAAGGATTTTGGGGCCTTTGTGGTTAAGGATTTTATGTTCAAAGAAACATGTTTTTCTTTTCTGATATAGTGCCTTTGGGAAACTTGTTTTATGATTTGAAATGCATTTAGGGGTCAGGCAATGAAAGAATTTAGAGTTGAAGTGGAGGCTATTGGCCATGATCAGGCAGAGACAAATTTCCACTACATGAGGTACTAAAATCAATATCTTGTTTTGTGACTGCATCATTGATTCCATTCTCTTTTGTCTAAATTTCAAGCATTTCACTGATATTAGTTGGTTGGCGAAGTCTACATTCTTTTTTTTTTTAATCTCTGGATTTGGTTTTGTTTGTATTCTTGGAATGGGACCCAAGATGTTCTAATTGAATTCTCCGATGATTATATCTCCTCTCCTTTTTTGGCTTAACAACGTAAATTGCTCATACTTTTAGTATATCAGTGTCTTTCAGTAGTTAGTTGAAAAATGATTTAAGACCTTGTTTCGATTTGAAGTAGTAGATCATCATCAATAATTTGAACTGCACTGTTGAAGATGTTCTGTGTAATGGATGTAATTACGACTAAATACTCTCTTTAATGTGTTGTTAGTGTTTTAATGTCCATGGTCGTCGTCGAGCGTCACAAGCCACTCGTCGATGTGAAACTCTTCAGGTTGTGTTCGATTTGGCAATTGAGGAATCCTTCGTCTTCTTCGACGACGACTCATAACCTTCACCATAGTGGTCATGACCCTAGCGAAAGAAACTCAACAACGTCGAATAATATCAAATTTCCATCATCTTCCGAGACAGAGTTCTCTATGGCGAAGTCGTTGCCTCCTTGGCGTCGGCTTTGA

mRNA sequence

ATGAGACTTAGCTCCACTGACTGGGTGCCATCTACCATCAGTAGGAGTAGAGACCTCCCAAAACTCCCACTTGTGCACTATCAAGCGAAATTTTGGGTGAAGCATTTCTCTTCCTCTGTTCATGGCCAACTTTTTTCACAAGCCGAAGTTGTAGCCGCCGCCATGGTTTACAGGACTGTGTTGTTATTTCCTAACTCATCAGTTTCATTGGCTTTACAAGACTGTGTTGTTGGGTTACTGTTCACTTTGTTTCCAGTACTGGGGTGGGAATTCTGGGGTCAGGCAATGAAAGAATTTAGAGTTGAAGTGGAGGCTATTGGCCATGATCAGGCAGAGACAAATTTCCACTACATGAGTGTTTTAATGTCCATGGTCGTCGTCGAGCGTCACAAGCCACTCGTCGATGTGAAACTCTTCAGGTTGTGTTCGATTTGGCAATTGAGGAATCCTTCGTCTTCTTCGACGACGACTCATAACCTTCACCATAGTGGTCATGACCCTAGCGAAAGAAACTCAACAACGTCGAATAATATCAAATTTCCATCATCTTCCGAGACAGAGTTCTCTATGGCGAAGTCGTTGCCTCCTTGGCGTCGGCTTTGA

Coding sequence (CDS)

ATGAGACTTAGCTCCACTGACTGGGTGCCATCTACCATCAGTAGGAGTAGAGACCTCCCAAAACTCCCACTTGTGCACTATCAAGCGAAATTTTGGGTGAAGCATTTCTCTTCCTCTGTTCATGGCCAACTTTTTTCACAAGCCGAAGTTGTAGCCGCCGCCATGGTTTACAGGACTGTGTTGTTATTTCCTAACTCATCAGTTTCATTGGCTTTACAAGACTGTGTTGTTGGGTTACTGTTCACTTTGTTTCCAGTACTGGGGTGGGAATTCTGGGGTCAGGCAATGAAAGAATTTAGAGTTGAAGTGGAGGCTATTGGCCATGATCAGGCAGAGACAAATTTCCACTACATGAGTGTTTTAATGTCCATGGTCGTCGTCGAGCGTCACAAGCCACTCGTCGATGTGAAACTCTTCAGGTTGTGTTCGATTTGGCAATTGAGGAATCCTTCGTCTTCTTCGACGACGACTCATAACCTTCACCATAGTGGTCATGACCCTAGCGAAAGAAACTCAACAACGTCGAATAATATCAAATTTCCATCATCTTCCGAGACAGAGTTCTCTATGGCGAAGTCGTTGCCTCCTTGGCGTCGGCTTTGA

Protein sequence

MRLSSTDWVPSTISRSRDLPKLPLVHYQAKFWVKHFSSSVHGQLFSQAEVVAAAMVYRTVLLFPNSSVSLALQDCVVGLLFTLFPVLGWEFWGQAMKEFRVEVEAIGHDQAETNFHYMSVLMSMVVVERHKPLVDVKLFRLCSIWQLRNPSSSSTTTHNLHHSGHDPSERNSTTSNNIKFPSSSETEFSMAKSLPPWRRL

Homology

[Close]

BLAST of Lag0001801 vs. NCBI nr
Match: KAG7024870.1 (Vesicle-associated protein 4-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.5 bits (236), Expect = 5.5e-16
Identity = 56/107 (52.34%), Postives = 70/107 (65.42%), Query Frame = 0


Query: 95  AMKEFRVEVEAIGHDQAETNFHYMSVLMSMVVVERHKPLVDVKLFRLCSIWQLRNPSSSS 154
           A++  R+    IG  +       + VLM+M V +RHKP  DVK FRLCSIWQ  N SSSS
Sbjct: 75  ALRHRRLHQRGIGDFRFGPGNLNVIVLMTMTVADRHKPHADVKFFRLCSIWQSGNTSSSS 134

Query: 155 TTTHNLHHSGHDPSERNSTTSNNIKFPSSSETEFSMAKS-LPPWRRL 201
            +T N+HH+ + P +RNST SNN+K  SSS T  S+AKS LPP RRL
Sbjct: 135 LSTQNIHHTRNGPKDRNSTASNNVKASSSSMTVSSVAKSLLPPRRRL 181

[Close]

BLAST of Lag0001801 vs. NCBI nr
Match: XP_038900245.1 (vesicle-associated protein 4-1 [Benincasa hispida])

HSP 1 Score: 92.4 bits (228), Expect = 4.6e-15
Identity = 52/81 (64.20%), Postives = 62/81 (76.54%), Query Frame = 0


Query: 122 MSMVVVERHKPLVDVKLFRLCSIWQLRNP-SSSSTTTHNLHHSGHDPSERNSTTSNNIKF 181
           M+M V +RHKP  D+KLFRLC IWQ  N  SSSS++T NLHHS H PS+RNST SNN+K 
Sbjct: 1   MTMAVADRHKPHADIKLFRLCPIWQSGNTNSSSSSSTQNLHHSSHGPSDRNSTVSNNMKA 60

Query: 182 PSSSETEFSMAKS-LPPWRRL 201
            +SS+T  S+AKS LPP RRL
Sbjct: 61  SASSKTVSSVAKSLLPPRRRL 81

[Close]

BLAST of Lag0001801 vs. NCBI nr
Match: XP_022937296.1 (vesicle-associated protein 4-1-like [Cucurbita moschata])

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-14
Identity = 50/80 (62.50%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 122 MSMVVVERHKPLVDVKLFRLCSIWQLRNPSSSSTTTHNLHHSGHDPSERNSTTSNNIKFP 181
           M+M V +RHKP  DVK FRLCSIWQ  N SSSS +T N+HH+ + P +RNST SNN+K  
Sbjct: 1   MTMTVADRHKPHADVKFFRLCSIWQSGNTSSSSLSTRNIHHTRNGPKDRNSTASNNVKAS 60

Query: 182 SSSETEFSMAKS-LPPWRRL 201
           SSS T  S+AKS LPP RRL
Sbjct: 61  SSSMTVSSVAKSLLPPRRRL 80

[Close]

BLAST of Lag0001801 vs. NCBI nr
Match: XP_022976559.1 (vesicle-associated protein 4-1-like [Cucurbita maxima])

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-14
Identity = 50/80 (62.50%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 122 MSMVVVERHKPLVDVKLFRLCSIWQLRNPSSSSTTTHNLHHSGHDPSERNSTTSNNIKFP 181
           M+M V +RHKP  DVK FRLCSIWQ  N SSSS +T N+HHS + P +RNST SNN+K  
Sbjct: 1   MTMTVADRHKPHADVKFFRLCSIWQSGNTSSSSLSTQNIHHSRNGPKDRNSTASNNVKAS 60

Query: 182 SSSETEFSMAKS-LPPWRRL 201
           SSS+T   +AKS LPP RRL
Sbjct: 61  SSSKTVSFVAKSLLPPRRRL 80

[Close]

BLAST of Lag0001801 vs. NCBI nr
Match: XP_023535121.1 (vesicle-associated protein 4-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 89.7 bits (221), Expect = 3.0e-14
Identity = 50/80 (62.50%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 122 MSMVVVERHKPLVDVKLFRLCSIWQLRNPSSSSTTTHNLHHSGHDPSERNSTTSNNIKFP 181
           M M V +RHKP  DVK FRLCSIWQ  N SSSS +T N+HH+ + P +RNST SNN+K  
Sbjct: 1   MIMTVADRHKPPADVKFFRLCSIWQSGNTSSSSLSTQNIHHARNGPKDRNSTASNNVKAS 60

Query: 182 SSSETEFSMAKS-LPPWRRL 201
           SSS T  S+AKS LPP RRL
Sbjct: 61  SSSMTVSSVAKSLLPPRRRL 80

[Close]

BLAST of Lag0001801 vs. ExPASy TrEMBL
Match: A0A6J1INV3 (vesicle-associated protein 4-1-like OS=Cucurbita maxima OX=3661 GN=LOC111476917 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.5e-15
Identity = 50/80 (62.50%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 122 MSMVVVERHKPLVDVKLFRLCSIWQLRNPSSSSTTTHNLHHSGHDPSERNSTTSNNIKFP 181
           M+M V +RHKP  DVK FRLCSIWQ  N SSSS +T N+HHS + P +RNST SNN+K  
Sbjct: 1   MTMTVADRHKPHADVKFFRLCSIWQSGNTSSSSLSTQNIHHSRNGPKDRNSTASNNVKAS 60

Query: 182 SSSETEFSMAKS-LPPWRRL 201
           SSS+T   +AKS LPP RRL
Sbjct: 61  SSSKTVSFVAKSLLPPRRRL 80

[Close]

BLAST of Lag0001801 vs. ExPASy TrEMBL
Match: A0A6J1F9Z2 (vesicle-associated protein 4-1-like OS=Cucurbita moschata OX=3662 GN=LOC111443622 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 6.5e-15
Identity = 50/80 (62.50%), Postives = 59/80 (73.75%), Query Frame = 0


Query: 122 MSMVVVERHKPLVDVKLFRLCSIWQLRNPSSSSTTTHNLHHSGHDPSERNSTTSNNIKFP 181
           M+M V +RHKP  DVK FRLCSIWQ  N SSSS +T N+HH+ + P +RNST SNN+K  
Sbjct: 1   MTMTVADRHKPHADVKFFRLCSIWQSGNTSSSSLSTRNIHHTRNGPKDRNSTASNNVKAS 60

Query: 182 SSSETEFSMAKS-LPPWRRL 201
           SSS T  S+AKS LPP RRL
Sbjct: 61  SSSMTVSSVAKSLLPPRRRL 80

[Close]

BLAST of Lag0001801 vs. ExPASy TrEMBL
Match: A0A6J1FIV4 (vesicle-associated protein 4-1-like OS=Cucurbita moschata OX=3662 GN=LOC111445783 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.8e-10
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 122 MSMVVVERHKPLVDVKLFRLCSIWQLRNPSSSSTTTHNLHHSGHDPSERNSTTSNNIKFP 181
           M+M V +R       KLF LCS+WQ  N SSSS++T NLHHS H PS+RN T SNN+K  
Sbjct: 1   MTMSVADRR------KLFTLCSMWQSGNTSSSSSSTQNLHHSIHGPSDRNLTASNNMKTS 60

Query: 182 SSSETEFSMAKS-LPPWRRL 201
           SSS+T  S+AKS LPP RRL
Sbjct: 61  SSSKTVSSVAKSLLPPRRRL 74

[Close]

BLAST of Lag0001801 vs. ExPASy TrEMBL
Match: A0A5A7T1W8 (Vesicle-associated protein 4-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G00390 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.3e-10
Identity = 47/79 (59.49%), Postives = 55/79 (69.62%), Query Frame = 0


Query: 124 MVVVERHKPLVDVKLFRLCSIWQLRNP-SSSSTTTHNLHHSGHDPSERNSTTSNNIKFPS 183
           M V +R K   DVKLFRLC IWQ  N  SSSS++THNLHH+ H PS+R     NN+K  S
Sbjct: 1   MAVADRPKSHADVKLFRLCPIWQSGNTNSSSSSSTHNLHHTTHGPSDR-----NNMKASS 60

Query: 184 SSETEFSMAKS-LPPWRRL 201
           SS+T  S+AKS LPP RRL
Sbjct: 61  SSKTVSSVAKSLLPPRRRL 74

[Close]

BLAST of Lag0001801 vs. ExPASy TrEMBL
Match: A0A1S3BZ62 (vesicle-associated protein 4-1 OS=Cucumis melo OX=3656 GN=LOC103494990 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.3e-10
Identity = 47/79 (59.49%), Postives = 55/79 (69.62%), Query Frame = 0


Query: 124 MVVVERHKPLVDVKLFRLCSIWQLRNP-SSSSTTTHNLHHSGHDPSERNSTTSNNIKFPS 183
           M V +R K   DVKLFRLC IWQ  N  SSSS++THNLHH+ H PS+R     NN+K  S
Sbjct: 1   MAVADRPKSHADVKLFRLCPIWQSGNTNSSSSSSTHNLHHTTHGPSDR-----NNMKASS 60

Query: 184 SSETEFSMAKS-LPPWRRL 201
           SS+T  S+AKS LPP RRL
Sbjct: 61  SSKTVSSVAKSLLPPRRRL 74

The following BLAST results are available for this feature:

BLAST of Lag0001801 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7024870.1	5.5e-16	52.34	Vesicle-associated protein 4-1, partial [Cucurbita argyrosperma subsp. argyrospe...	[more]
XP_038900245.1	4.6e-15	64.20	vesicle-associated protein 4-1 [Benincasa hispida]	[more]
XP_022937296.1	1.4e-14	62.50	vesicle-associated protein 4-1-like [Cucurbita moschata]	[more]
XP_022976559.1	1.4e-14	62.50	vesicle-associated protein 4-1-like [Cucurbita maxima]	[more]
XP_023535121.1	3.0e-14	62.50	vesicle-associated protein 4-1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0001801 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0001801 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1INV3	6.5e-15	62.50	vesicle-associated protein 4-1-like OS=Cucurbita maxima OX=3661 GN=LOC111476917 ...	[more]
A0A6J1F9Z2	6.5e-15	62.50	vesicle-associated protein 4-1-like OS=Cucurbita moschata OX=3662 GN=LOC11144362...	[more]
A0A6J1FIV4	2.8e-10	58.75	vesicle-associated protein 4-1-like OS=Cucurbita moschata OX=3662 GN=LOC11144578...	[more]
A0A5A7T1W8	6.3e-10	59.49	Vesicle-associated protein 4-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3BZ62	6.3e-10	59.49	vesicle-associated protein 4-1 OS=Cucumis melo OX=3656 GN=LOC103494990 PE=4 SV=1	[more]

BLAST of Lag0001801 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 169..190
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..200

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001801.1	Lag0001801.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane