Lag0001754 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001754
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotran_gag_3 domain-containing protein
Location	chr4: 35037900 .. 35042057 (+)
RNA-Seq Expression	Lag0001754
Synteny	Lag0001754

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCGACTCAACTGCAGTCGTCGCCGCTAATCCCCTTCTTGATGAATCTTCCCTTGAAGCCCAGATCAATCCCTACATCTTGCATCACTCGACTGCCACCACCACTGCTCTTGTGACTGAGCAACTTAGTGGCGCAGAGAATTACATTTCTTGGAGCATGGCTATGCTGATTGCTCTTTCCGAGAAGAATAAACTGGGATTTGTGAACGGAACTATCAAGAAACTTGCTAGCGGGAACTTGTCGACAGCATGGTAGTGTAACAATGATATTGTTACATCATGGATCATTAATTCAATTTCTAAACGCATAGCTGTAAGTCATGTTTATATAGGCTGTGCAAAGGATCTTTGGGATGAATTGAAAGAAAGATATCGACAGACAAATAGACCACGAATTTTCCAATTGCGAAAGCAATTAATCACCACGACTCAAGGCTTGTCCTCTATGGAAGAATATTACACAAGAATAACCACGATCTGGCAAGAACTTATGGAATTTCGTCCTATTTTCAAATATAGCTGTGGAGGATTAAAATCTGTGGAAAAATATCTACAATCTGAATTCGTGATGTCCTTTCTCATGGGACTAAACGAATCCTATTCAGTACTTTGCACCCAAATTTTGCTGATCAGTCATTTACCTTCGATGAAAAAGGTGTTTTCTCTTGTCATCCAAGAAGAGTCATAGCGGGCAGTTGGTGGATTACCTGGAACTTTGCCTGGCGGTTGCGGAGTCAGTAGCCTTAGCAGTTGCAACTGACAATTCGAAGAAAGGCTCGCAGGACAGATCTCAAATGTCGCGCAAAAGGGAAGGACAACGCCCTATATGCTCACATTGTGGAGTTAAAGGCCATGTTGTCGATCGTTGTTATAAGATACATGGTTATCCACCGGGTTACATGCGACCTAATCAACAAGGTAATATTGAAAAAAAGTGATGATACAACAAGTACCAAGAATCAAGACAAGTCTACTTTCTTTGCAAGCCTTATGAATGATCAGTACTCCCAATTGATTGGCCTCCTTCAGAGTCATCTTCCGAAGGCTAATGCAGAAGCTGTTCAGACTACTCATGTGACAGGTAATTCCTTTATCGCTTTCTCATACTTACATGAAGAAGTCAATGATTCTTGGGTAGTAGATTCAGGTGCATCCAGCCATATTTGTCATGACAAATCCCTATTCATAATCTACGACCTGCTCACAACATATCTGGTATCTTGCCCACTCAAACCCGATTTTTCGTTGAGCACATTGGGGTTGTCAAAATTATTGCACAGATGATTCTACGAGATGTTTTATTTCTTCCACAGTTCACTTACAACCTCCTGTCGATCAGTGCTTTATTAAAGGATAGTAGATACTCTGTTGATTTTACTGGTGATTCTTGTTGCATCCAGGACAAGTTGCTATTGAGGAAGATTGGCAAGGTTGATTGTGTTAAAGGTCTCTACCTTTTTTCACCTAAGGCCTCTGCTGATATGGTACATTTTGTCTTTTCTGCTAAAGCTTGTCATTCTGCTGATATTTGGCACCAATGATTGGGGCATTTATCTTCTGCTCGTTTAAAAACATTGAAGGATTGTTTGGGCCTTGCTGATTTTTCTCATACTGTCTGTCATACTGTCCATTAGCTAAACAAAAACGCATGTCCTTTTCATCCCATAATCATGTATCTCCAAATGTTTTTGATTTGGTAAATTGTGATGTTTGGGGCCCCTTTAGGACTAGCACTTATGCTGGGTATTCTTACTTTCTCACCCTTGTAGATGATTGTTCTTATCCTCTTCTATTTAAACAGAGGAGATATTCTTGTAAACATATGCTAATTTGTGAATAAGATCAGTTTTATCTCCCTCCTCATTTGTGTGTGTGTAATATGTACCTTTGACCATCGAATCTCCCCACCTCCAAATGTTGATGTACTAAAAAAAAAAAAAACAAGTGTTGATGTACTCAAAAAAAAAAAGATTGAGGTGGAGGGATTCAAACCTTTAATCTCTTGGTCGAAGGTATATGTCAATTACCGCTATGCTAGCTTTGGTTCACATGAATTTTTCTATATATTTTTTTTTACGAAGGAATTCTCCTAGAATTAATTTTAGTTGAAGGGAATATTTTTATATTTATGATCAAATTACATAGGATAATTGTAATGGGTGGCAAAATTAGGGTAAATAATTGCAATTTAACAATTTTTTAAAATATTTGCAAATATGGCAAAATTTTTTAATTAATTTTTTATATCCCTATTTTGCCCTTAATTGCGCGCGCATCTGGTAGATTTTTCTCCTCTATTTTTGTTTTGGTAGGTTTCTATCTGATAGAAAATTTTTCTATCACTGATAGATTCTATCAGTGATATGAAAACTTACTGATAGAATCTATCAGTGATAGAGAAAGTTTTCTATCAGTGATAGAAAACTTCTATCACTAATAGAAATCTTCTATCACTGATAGAAAGTTGATAGAAGTTTTTCTATCACTGATAGAAAGTTTTTCTATCACTGATAGAATTAACTTTCTATCAGTGATAGAAAACTTTCTATCAGTGATAGAAGATTTCTATCACTGATAGAATCTATCAGTGATAGAAGTTTTCTATCACTGATAGAATTAACTTTCTATCAGTGATAGAATTAACTTTCTATCACTGATAGAACGTTTTTCTATCACTGATAGAACGTTTTTCTATCAGTGATAGAAAAGCGTTCTATCAGTGAAAGAATTAACTTTCTATCATTGATAGAAATCTTCTATCATTGATAGAATTAACTTTGTATTAGTGATAGAAGTTTTGTATCACTGATAGAAAGTTTTTCTATCACTGATAGAATCTATCAGTGATAGTCAGTGATAGAATTAACTTTCCTATCAGTGATAGAATCTATCACTGATAGGAATTAACTTTCCTATCTATCACATCAATGATAGAAATCTTCTATCACTGATAGAAAGGTTTCTATCAGTGATAGAAATCATAATTCTATCGAAGATTTCTATCAATGATAGAAAATTTTTCTATCAGTGATAGAAAACTTTTCTATCACTGATAGAAAGTTAATTCTATCAACTTTCTATCAGTGATAGATTCTATCAGTGATAGAAATCTTCTTTCATTGATAGAATTAACTTTCTATTAGTGATAGAAGTTTTGTATCACTGATAGAAAGTTTTTCTATCACTGATAGAATCTATCAGTGATAGAAAAACTTTCTATTACTGATAGAAACTTTCTATTAGTGATAGAATTTTCTATCATTGATAGAAAAACTTTCTATCACTGATAGAATCTATCACATCAATGATAGAAATCTTCTATCACTAATAGAAAGGTTTCTATCAGTGATAGAAATCATAATTCTATCGAAGATTTCTATCACTATCACTGATAGATTCTATCAGTGATAGAAAAGTTTTCTATCACTGATAGAAAAGTGGATAGAAAAATTTTCTATCACTGATAGAAAAGGATAGAAACTTTTCTATCATTGATAGAAATCTTCTATCATTGATAGAATGTTAATTCTATCAACTTTCTATCAGTGATAGATTCTATCAGTGATAGAAATCTTCTATCATTGATAGAATTAACTTTCTATTAGTGATAGAAGTTTTGTATCAGTGATAGAAAGTTTTCTATCACTGATAGAATCTATCAGTGATAGAAAAACTTTCTATCACTGATAGAAACTTTCTATCAGTGATAGAATTAACTTTCCTATCAGTAACTTTCCTATCAGTGATAGAATTTTCTATCACTGATAGAAATCTTCTATCACTGATAGAAAGGTTTCTATCACTGATAGAAATCATAATTCTATCGGAGATTTCTATCACTGATAGAAATCTTCTATCACTGATAGAAAGTTAATTCTATCAACTTTCTATCAGTGATAGAAAGTTAATTCTATCACTGATAGAAACTTTTCTATCACTGATAGATTCTATCAGTGATCGAAAAAATTTCTATCGACCTCGACTCCGCTCTCCATTTAACGCCCCCGACTCTGTCGACCTTGGGATTGTCCGTCGGAAACTTGATCTCGAGGCGGAAGATCCAGGCGAACTGGCAATAAGACCATGGAGGCTGCTTCACCATCGGGAAGAAGAGATGGCAATAAGTCTAGAGGAATCGAAGTTCGAGCGACGATAA

mRNA sequence

ATGACCGACTCAACTGCAGTCGTCGCCGCTAATCCCCTTCTTGATGAATCTTCCCTTGAAGCCCAGATCAATCCCTACATCTTGCATCACTCGACTGCCACCACCACTGCTCTTGTGACTGAGCAACTTAGTGGCGCAGAGAATTACATTTCTTGGAGCATGGCTATGCTGATTGCTCTTTCCGAGAAGAATAAACTGGGATTTGTGAACGGAACTATCAAGAAACTTGCTAGCGGGAACTTGTCGACAGCATGGTGTTTTCTCTTGTCATCCAAGAAGAGTCATAGCGGGCAGTTGGTGGATTACCTGGAACTTTGCCTGGCGGTTGCGGAGTCAGTAGCCTTAGCAGTTGCAACTGACAATTCGAAGAAAGGCTCGCAGGACAGATCTCAAATGTCGCGCAAAAGGGAAGGACAACGCCCTATATGCTCACATTGTGGAGTTAAAGGCCATGTTGTCGATCGTTGTTATAAGATACATGGTTATCCACCGGGTTACATGCGACCTAATCAACAAGGTAATTCCTTTATCGCTTTCTCATACTTACATGAAGAAGTCAATGATTCTTGGGTAGTAGATTCAGGTGCATCCAGCCATATTTGTCATGACAAATCCCTATTCATAATCTACGACCTGCTCACAACATATCTGTTCACTTACAACCTCCTGTCGATCAGTGCTTTATTAAAGGATAGTAGATACTCTGTTGATTTTACTGGTGATTCTTGTTGCATCCAGGACAAGTTGCTATTGAGGAAGATTGGCAAGGTTGATTGTGTTAAAGATTCTATCAGTGATCGAAAAAATTTCTATCGACCTCGACTCCGCTCTCCATTTAACGCCCCCGACTCTGTCGACCTTGGGATTGTCCGTCGGAAACTTGATCTCGAGGCGGAAGATCCAGGCGAACTGGCAATAAGACCATGGAGGCTGCTTCACCATCGGGAAGAAGAGATGGCAATAAGTCTAGAGGAATCGAAGTTCGAGCGACGATAA

Coding sequence (CDS)

ATGACCGACTCAACTGCAGTCGTCGCCGCTAATCCCCTTCTTGATGAATCTTCCCTTGAAGCCCAGATCAATCCCTACATCTTGCATCACTCGACTGCCACCACCACTGCTCTTGTGACTGAGCAACTTAGTGGCGCAGAGAATTACATTTCTTGGAGCATGGCTATGCTGATTGCTCTTTCCGAGAAGAATAAACTGGGATTTGTGAACGGAACTATCAAGAAACTTGCTAGCGGGAACTTGTCGACAGCATGGTGTTTTCTCTTGTCATCCAAGAAGAGTCATAGCGGGCAGTTGGTGGATTACCTGGAACTTTGCCTGGCGGTTGCGGAGTCAGTAGCCTTAGCAGTTGCAACTGACAATTCGAAGAAAGGCTCGCAGGACAGATCTCAAATGTCGCGCAAAAGGGAAGGACAACGCCCTATATGCTCACATTGTGGAGTTAAAGGCCATGTTGTCGATCGTTGTTATAAGATACATGGTTATCCACCGGGTTACATGCGACCTAATCAACAAGGTAATTCCTTTATCGCTTTCTCATACTTACATGAAGAAGTCAATGATTCTTGGGTAGTAGATTCAGGTGCATCCAGCCATATTTGTCATGACAAATCCCTATTCATAATCTACGACCTGCTCACAACATATCTGTTCACTTACAACCTCCTGTCGATCAGTGCTTTATTAAAGGATAGTAGATACTCTGTTGATTTTACTGGTGATTCTTGTTGCATCCAGGACAAGTTGCTATTGAGGAAGATTGGCAAGGTTGATTGTGTTAAAGATTCTATCAGTGATCGAAAAAATTTCTATCGACCTCGACTCCGCTCTCCATTTAACGCCCCCGACTCTGTCGACCTTGGGATTGTCCGTCGGAAACTTGATCTCGAGGCGGAAGATCCAGGCGAACTGGCAATAAGACCATGGAGGCTGCTTCACCATCGGGAAGAAGAGATGGCAATAAGTCTAGAGGAATCGAAGTTCGAGCGACGATAA

Protein sequence

MTDSTAVVAANPLLDESSLEAQINPYILHHSTATTTALVTEQLSGAENYISWSMAMLIALSEKNKLGFVNGTIKKLASGNLSTAWCFLLSSKKSHSGQLVDYLELCLAVAESVALAVATDNSKKGSQDRSQMSRKREGQRPICSHCGVKGHVVDRCYKIHGYPPGYMRPNQQGNSFIAFSYLHEEVNDSWVVDSGASSHICHDKSLFIIYDLLTTYLFTYNLLSISALLKDSRYSVDFTGDSCCIQDKLLLRKIGKVDCVKDSISDRKNFYRPRLRSPFNAPDSVDLGIVRRKLDLEAEDPGELAIRPWRLLHHREEEMAISLEESKFERR

Homology

[Close]

BLAST of Lag0001754 vs. NCBI nr
Match: KAA0035612.1 (No apical meristem (NAM) protein [Cucumis melo var. makuwa] >TYK30930.1 No apical meristem (NAM) protein [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 1.0e-22
Identity = 101/331 (30.51%), Postives = 137/331 (41.39%), Query Frame = 0


Query: 23  INPYILHHSTATTTALVTEQLSGAENYISWSMAMLIALSEKNKLGFVNGTIKKLASGNLS 82
           INPY +HHS   T A+V + L+GA NYISWS AML+A+S +NK GF+ G I+K + G L 
Sbjct: 20  INPYFIHHSLGPTAAIVMQPLTGAINYISWSRAMLMAISGRNKAGFITGKIQKPSDGVLL 79

Query: 83  TAW--------CFLLSSKKSHSGQLVDYL--------------ELCLAV----------- 142
            AW         ++L+S        + Y               + C+++           
Sbjct: 80  DAWICNNDILASWILNSVSKEIAASIIYTGSSTNSPYATFTFNQHCISLLIQEEQQRSAG 139

Query: 143 -----AESVALAVATDNSKKGSQDRSQMSRKREGQRPICSHCGVKGHVVDRCYKIHGYPP 202
                 + VAL   T N        +  +RK+E  RP C +CG+KGH+ D+CYK HGYPP
Sbjct: 140 ILTPPIDPVAL-FTTQNIAPTMAISTDRNRKKE--RPTCCYCGIKGHIADKCYKKHGYPP 199

Query: 203 GYMRPNQ-------------QGNSFIA------FSYLHEE-------------------- 255
           GY   N                NS  A      FS L+ E                    
Sbjct: 200 GYKPRNSNPITNTSKTNKVANTNSTAANHSPDFFSSLNSEQYSQLMTLLNNHLQAAITAP 259

[Close]

BLAST of Lag0001754 vs. NCBI nr
Match: KAA0065480.1 (Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa] >TYK08721.1 Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 7.2e-21
Identity = 115/463 (24.84%), Postives = 156/463 (33.69%), Query Frame = 0


Query: 17  SSLEAQINPYILHHSTATTTALVTEQLSGAENYISWSMAMLIALSEKNKLGFVNGTIKKL 76
           S  +AQ+NPY +HHS   T A+VT+ L+GA NY SWS AML+A+S +NK GF+ G I+K 
Sbjct: 20  SQNDAQLNPYFIHHSLGPTAAIVTQPLTGAINYTSWSRAMLMAISGRNKAGFITGKIQKP 79

Query: 77  ASGNLSTAW--------CFLLSS--------------------------KKSHSGQL--- 136
           + G L  AW         ++L+S                          K+S+   +   
Sbjct: 80  SDGVLLDAWICNNDILASWILNSVSKEIAASIIYIGSIKEIWDELRQRFKQSNGPSIYQL 139

Query: 137 ---------------------------------------------VDYLE------LCLA 196
                                                        +D+LE        + 
Sbjct: 140 RKEFVTLRQGNLTIETYYTKLKTIWQNLNEYRFTNDCTCGGLKPFIDHLESEYIMAFLMG 199

Query: 197 VAESVA--------------------LAVATDNSKK---------------GSQDRSQMS 256
           + +S A                    L +  +  +                 S       
Sbjct: 200 LNDSYAAVRAQILLMQPLPSINTVFSLLIQEEQQRSAGILTPPIDPVALNIASSMAISTD 259

Query: 257 RKREGQRPICSHCGVKGHVVDRCYKIHGYPPGYMRPNQQG----------------NSFI 260
           R R+ +RP CS+CG+KGH+ D+CYK HGYPPGY   N                   NS  
Sbjct: 260 RNRKKERPTCSYCGIKGHIADKCYKKHGYPPGYKPRNSNSITTAPDTSKTNNVANTNSAA 319

[Close]

BLAST of Lag0001754 vs. NCBI nr
Match: KAA8535721.1 (hypothetical protein F0562_030716 [Nyssa sinensis])

HSP 1 Score: 106.7 bits (265), Expect = 3.9e-19
Identity = 73/186 (39.25%), Postives = 105/186 (56.45%), Query Frame = 0


Query: 1   MTDSTAVVAANPLLDESSLEAQINPYILHHSTATTTALVTEQLSGAENYISWSMAMLIAL 60
           M+DS +    N   + S+++   NPY LHHS +    LV++QL+G ENY +WS AMLIAL
Sbjct: 7   MSDSNSGERTNS--NRSAIDEPSNPYYLHHSDSPGQMLVSQQLTG-ENYTNWSRAMLIAL 66

Query: 61  SEKNKLGFVNGTI--KKLASGNLSTAWCFLLS-------SKKSHSGQLVDYLELCLAVAE 120
           S KNKLGFV+G+I   +++S +L      + S        K+++           +A A 
Sbjct: 67  SVKNKLGFVDGSIPEPQVSSLDLMPPINHVFSPIVQEEQQKRTNPSFDSSNSTGTMAFAV 126

Query: 121 SVALAVATDNSKKGSQDR-SQMSRKREGQRPICSHCGVKGHVVDRCYKIHGYPPGY-MRP 176
              +A +  +S + SQ+  S  S+ ++  RP C HC + GH VDR YKIHGYPPGY  R 
Sbjct: 127 KTNVAKSAGSSSQNSQNSISSASKNQKRDRPYCMHCKILGHTVDRYYKIHGYPPGYKFRS 186

[Close]

BLAST of Lag0001754 vs. NCBI nr
Match: KAA8535725.1 (hypothetical protein F0562_030773 [Nyssa sinensis])

HSP 1 Score: 105.1 bits (261), Expect = 1.1e-18
Identity = 72/186 (38.71%), Postives = 105/186 (56.45%), Query Frame = 0


Query: 1   MTDSTAVVAANPLLDESSLEAQINPYILHHSTATTTALVTEQLSGAENYISWSMAMLIAL 60
           M+DS +    N   + S+++   NPY LHHS +    LV++QL+G ENY +WS AMLIAL
Sbjct: 7   MSDSNSGERTNS--NRSAIDEPSNPYYLHHSDSPGQMLVSQQLTG-ENYTNWSRAMLIAL 66

Query: 61  SEKNKLGFVNGTI--KKLASGNLSTAWCFLLS-------SKKSHSGQLVDYLELCLAVAE 120
             KNKLGFV+G+I   +++S +L      + S        K+++           +A A 
Sbjct: 67  FVKNKLGFVDGSIPEPQVSSLDLMPPINHVFSPIVQEEQQKRTNPSFDSSNSTGTMAFAV 126

Query: 121 SVALAVATDNSKKGSQDR-SQMSRKREGQRPICSHCGVKGHVVDRCYKIHGYPPGY-MRP 176
              +A +  +S + SQ+  S  S+ ++  RP C+HC + GH VDR YKIHGYPPGY  R 
Sbjct: 127 KTNVAKSAGSSSQNSQNSISSASKNQKRDRPYCTHCKILGHTVDRYYKIHGYPPGYKFRS 186

[Close]

BLAST of Lag0001754 vs. NCBI nr
Match: XP_022154608.1 (uncharacterized protein LOC111021831 [Momordica charantia])

HSP 1 Score: 100.1 bits (248), Expect = 3.7e-17
Identity = 73/247 (29.55%), Postives = 112/247 (45.34%), Query Frame = 0


Query: 12  PLLDESS----------LEAQINPYILHHSTATTTALVTEQLSGAENYISWSMAMLIALS 71
           P+LD+SS          +++ +NPY LHH+  T   LVT+ L+  ENY SWS +MLIALS
Sbjct: 18  PVLDDSSSPNSSSSVSGVDSVLNPYYLHHTDNTELVLVTQPLT-EENYSSWSRSMLIALS 77

Query: 72  EKNKLGFVNGTIKK---------LASGNLSTAWCFLLSSKKSHSG--------------- 131
            KNKLGF++G+I +         + + ++  AW     SK+  S                
Sbjct: 78  IKNKLGFIDGSISRPIGELLPAWIHNNHVVIAWILNSVSKEISSSILFSESARDIWIDLK 137

Query: 132 ----------------------------------------QLVDYLELC------LAVAE 176
                                                   +L+ Y  LC       + + 
Sbjct: 138 ERFEKSNGPRIFQLKRDLAQLWQNQQSVSLYFTKLKAVWDELIQYRPLCSCSCVSSSPSP 197

[Close]

BLAST of Lag0001754 vs. ExPASy TrEMBL
Match: A0A5D3E5P0 (No apical meristem (NAM) protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001460 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.9e-23
Identity = 101/331 (30.51%), Postives = 137/331 (41.39%), Query Frame = 0


Query: 23  INPYILHHSTATTTALVTEQLSGAENYISWSMAMLIALSEKNKLGFVNGTIKKLASGNLS 82
           INPY +HHS   T A+V + L+GA NYISWS AML+A+S +NK GF+ G I+K + G L 
Sbjct: 20  INPYFIHHSLGPTAAIVMQPLTGAINYISWSRAMLMAISGRNKAGFITGKIQKPSDGVLL 79

Query: 83  TAW--------CFLLSSKKSHSGQLVDYL--------------ELCLAV----------- 142
            AW         ++L+S        + Y               + C+++           
Sbjct: 80  DAWICNNDILASWILNSVSKEIAASIIYTGSSTNSPYATFTFNQHCISLLIQEEQQRSAG 139

Query: 143 -----AESVALAVATDNSKKGSQDRSQMSRKREGQRPICSHCGVKGHVVDRCYKIHGYPP 202
                 + VAL   T N        +  +RK+E  RP C +CG+KGH+ D+CYK HGYPP
Sbjct: 140 ILTPPIDPVAL-FTTQNIAPTMAISTDRNRKKE--RPTCCYCGIKGHIADKCYKKHGYPP 199

Query: 203 GYMRPNQ-------------QGNSFIA------FSYLHEE-------------------- 255
           GY   N                NS  A      FS L+ E                    
Sbjct: 200 GYKPRNSNPITNTSKTNKVANTNSTAANHSPDFFSSLNSEQYSQLMTLLNNHLQAAITAP 259

[Close]

BLAST of Lag0001754 vs. ExPASy TrEMBL
Match: A0A5A7VE66 (Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00250 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.5e-21
Identity = 115/463 (24.84%), Postives = 156/463 (33.69%), Query Frame = 0


Query: 17  SSLEAQINPYILHHSTATTTALVTEQLSGAENYISWSMAMLIALSEKNKLGFVNGTIKKL 76
           S  +AQ+NPY +HHS   T A+VT+ L+GA NY SWS AML+A+S +NK GF+ G I+K 
Sbjct: 20  SQNDAQLNPYFIHHSLGPTAAIVTQPLTGAINYTSWSRAMLMAISGRNKAGFITGKIQKP 79

Query: 77  ASGNLSTAW--------CFLLSS--------------------------KKSHSGQL--- 136
           + G L  AW         ++L+S                          K+S+   +   
Sbjct: 80  SDGVLLDAWICNNDILASWILNSVSKEIAASIIYIGSIKEIWDELRQRFKQSNGPSIYQL 139

Query: 137 ---------------------------------------------VDYLE------LCLA 196
                                                        +D+LE        + 
Sbjct: 140 RKEFVTLRQGNLTIETYYTKLKTIWQNLNEYRFTNDCTCGGLKPFIDHLESEYIMAFLMG 199

Query: 197 VAESVA--------------------LAVATDNSKK---------------GSQDRSQMS 256
           + +S A                    L +  +  +                 S       
Sbjct: 200 LNDSYAAVRAQILLMQPLPSINTVFSLLIQEEQQRSAGILTPPIDPVALNIASSMAISTD 259

Query: 257 RKREGQRPICSHCGVKGHVVDRCYKIHGYPPGYMRPNQQG----------------NSFI 260
           R R+ +RP CS+CG+KGH+ D+CYK HGYPPGY   N                   NS  
Sbjct: 260 RNRKKERPTCSYCGIKGHIADKCYKKHGYPPGYKPRNSNSITTAPDTSKTNNVANTNSAA 319

[Close]

BLAST of Lag0001754 vs. ExPASy TrEMBL
Match: A0A5J5B3G7 (Retrotran_gag_3 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_030716 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.9e-19
Identity = 73/186 (39.25%), Postives = 105/186 (56.45%), Query Frame = 0


Query: 1   MTDSTAVVAANPLLDESSLEAQINPYILHHSTATTTALVTEQLSGAENYISWSMAMLIAL 60
           M+DS +    N   + S+++   NPY LHHS +    LV++QL+G ENY +WS AMLIAL
Sbjct: 7   MSDSNSGERTNS--NRSAIDEPSNPYYLHHSDSPGQMLVSQQLTG-ENYTNWSRAMLIAL 66

Query: 61  SEKNKLGFVNGTI--KKLASGNLSTAWCFLLS-------SKKSHSGQLVDYLELCLAVAE 120
           S KNKLGFV+G+I   +++S +L      + S        K+++           +A A 
Sbjct: 67  SVKNKLGFVDGSIPEPQVSSLDLMPPINHVFSPIVQEEQQKRTNPSFDSSNSTGTMAFAV 126

Query: 121 SVALAVATDNSKKGSQDR-SQMSRKREGQRPICSHCGVKGHVVDRCYKIHGYPPGY-MRP 176
              +A +  +S + SQ+  S  S+ ++  RP C HC + GH VDR YKIHGYPPGY  R 
Sbjct: 127 KTNVAKSAGSSSQNSQNSISSASKNQKRDRPYCMHCKILGHTVDRYYKIHGYPPGYKFRS 186

[Close]

BLAST of Lag0001754 vs. ExPASy TrEMBL
Match: A0A5J5AX79 (Retrotran_gag_3 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_030773 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 5.6e-19
Identity = 72/186 (38.71%), Postives = 105/186 (56.45%), Query Frame = 0


Query: 1   MTDSTAVVAANPLLDESSLEAQINPYILHHSTATTTALVTEQLSGAENYISWSMAMLIAL 60
           M+DS +    N   + S+++   NPY LHHS +    LV++QL+G ENY +WS AMLIAL
Sbjct: 7   MSDSNSGERTNS--NRSAIDEPSNPYYLHHSDSPGQMLVSQQLTG-ENYTNWSRAMLIAL 66

Query: 61  SEKNKLGFVNGTI--KKLASGNLSTAWCFLLS-------SKKSHSGQLVDYLELCLAVAE 120
             KNKLGFV+G+I   +++S +L      + S        K+++           +A A 
Sbjct: 67  FVKNKLGFVDGSIPEPQVSSLDLMPPINHVFSPIVQEEQQKRTNPSFDSSNSTGTMAFAV 126

Query: 121 SVALAVATDNSKKGSQDR-SQMSRKREGQRPICSHCGVKGHVVDRCYKIHGYPPGY-MRP 176
              +A +  +S + SQ+  S  S+ ++  RP C+HC + GH VDR YKIHGYPPGY  R 
Sbjct: 127 KTNVAKSAGSSSQNSQNSISSASKNQKRDRPYCTHCKILGHTVDRYYKIHGYPPGYKFRS 186

[Close]

BLAST of Lag0001754 vs. ExPASy TrEMBL
Match: A0A2N9J0I6 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58180 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-17
Identity = 56/148 (37.84%), Postives = 88/148 (59.46%), Query Frame = 0


Query: 24  NPYILHHSTATTTALVTEQLSGAENYISWSMAMLIALSEKNKLGFVNGTI-----KKLAS 83
           N + LHH  +    LV++ LSG +NY +WS ++++AL+ KNK+GF+NGTI     + L S
Sbjct: 30  NQFFLHHGDSPDIILVSQSLSG-DNYHTWSRSIIMALTAKNKVGFINGTISAPVDQSLPS 89

Query: 84  GNLSTAWCFLLSSKKSHSGQLVDYLELCLAVAESVALAVATDNSKKGSQDRSQMSRKREG 143
            NL T  C  +  ++S     +          +S+AL   ++  +     RS   +K   
Sbjct: 90  FNLWTC-CNTMERQRSIGVTALG------NSGDSMALYTRSEVPRNNFSGRSYSEKK--- 149

Query: 144 QRPICSHCGVKGHVVDRCYKIHGYPPGY 167
           +RP+CSHCG+ GH+VD+CYK+HG+PPG+
Sbjct: 150 ERPLCSHCGISGHIVDKCYKLHGFPPGF 166

The following BLAST results are available for this feature:

BLAST of Lag0001754 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035612.1	1.0e-22	30.51	No apical meristem (NAM) protein [Cucumis melo var. makuwa] >TYK30930.1 No apica...	[more]
KAA0065480.1	7.2e-21	24.84	Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa] >T...	[more]
KAA8535721.1	3.9e-19	39.25	hypothetical protein F0562_030716 [Nyssa sinensis]	[more]
KAA8535725.1	1.1e-18	38.71	hypothetical protein F0562_030773 [Nyssa sinensis]	[more]
XP_022154608.1	3.7e-17	29.55	uncharacterized protein LOC111021831 [Momordica charantia]	[more]

BLAST of Lag0001754 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0001754 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E5P0	4.9e-23	30.51	No apical meristem (NAM) protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5A7VE66	3.5e-21	24.84	Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa O...	[more]
A0A5J5B3G7	1.9e-19	39.25	Retrotran_gag_3 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_0...	[more]
A0A5J5AX79	5.6e-19	38.71	Retrotran_gag_3 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_0...	[more]
A0A2N9J0I6	1.4e-17	37.84	Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB...	[more]

BLAST of Lag0001754 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029472	Retrotransposon Copia-like, N-terminal	PFAM	PF14244	Retrotran_gag_3	coord: 29..75 e-value: 3.1E-14 score: 52.5
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 22..85
None	No IPR available	PANTHER	PTHR37610:SF55	SUBFAMILY NOT NAMED	coord: 22..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001754.1	Lag0001754.1	mRNA