Lag0001717 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001717
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr4: 34630434 .. 34633494 (-)
RNA-Seq Expression	Lag0001717
Synteny	Lag0001717

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATTCAGAGACTAGAACTCTGCTTGGAGTTGCTGAGAATGGCCGTCAATTTCGTCGTCGTCGTCGCCGAATCCGTCGGCGAGGTCATCCACCAGGAGTCCCAGCCGCCGCACCGGCCTGCGGCTACTCCTAGGGTTCCGATTCCGTTCGTGGGATTTTACCCCTAAATCCATCCTCCGCCGCCGGCCGCGGCGGCGATGTGGCGATGTTCGTTCGAAGTTAGTGTGAATTTTGTGTTTTTTTTTTTTAGTAATTAAATCGAGGTTTTGTATTTTTTTTTTGGAAATATTCCAATTCTCATTTTGTTGGTTTTATCGTCATTTCGACACCGGACCCTTGTGACCGACAATAATTGAGCAACGTGAACTCTGCGCCTTGTTATGATCTTAAATGGATAATATGTTATTCTTTTTGGAACTAAAATGAACTTATAATTCAAATTCTCAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAAGTTATGATACAAATAAATTTGAATGGATTGGATGGGGTGCATATGTAAATATTGTAGAATTTTGGGTTGAGGTGAGAAATAGAATGATTATCCAATGGCTTTATGGGAAATTATAAACGTTTTTTTTTCTCTGTTGGATCTCGAACTTATTCTTTTACTTTAGATTTTGAACATATTTTTAAACTAAAAAAATTCAAAATAATTCTAGAGGTTATTTGTACTAATTTTTGGATGGGACGGTGCCATCTTTAAAAATAAAGGTAATTAAATTGTGACGAAAAAGTTAGGTAATATTAATCGAACAGTATGTGTTGGGACACTTTTACAAGTCATACAGAATTATGGAGAATTTTTTTTTTTTTTTTTTTTTTTTGAAAAAACAGAATTATGGAGATTTAACTTTTAATTTTAATTCCTGAACCTTTATATTCATTTAATATTTCGGACGAACTCAAGCGGCTTAACTTATTTTTAAAAGAAAGTTACTAATGTTTTATCAATTAAGATAGGTTCAAGGTAATATATTTATTTTGTTTTTTATTTCATTTTTTAACCTCTTAACTTCTAGATGTTTTTTAGGATTCCTTTGGAATAACTTTTTAAGTGTTTTAAAACGTGTTTTTAAATGTAAAAAAAAAATGTTTTTGGTTAATTTTTGGTAAACACTTTTACATAAATTCGAGTCTACATATGAAACTACCTATTATATGTAACTTTAAATATTTTTTTTTTATTTAAACATTTTACTTGTATCTTAGGAGAGTTGAAAATGTTTATAGTAAAGTAAAAAACGTTGCCTTCTACTTCTTATACCCTATAGTCGTTCAATTTTAAAATTTTAGAGAAAAATAAGAGAAGACTTTAAAATTTGTAATTTTCTTTTACAAACTTTTAAGTTAAAATGAGTTGAGAGCCGACAGTCATATTAAGCTTTTTTTTTTTTTTTTTTTTGACATGTGGAGGTGTGGGATTCGAACCAAATTATTAGTACAAATTTTATGTTAGTTGAGTTATTCTCATGTTGGCCCCTCCATTTCATCCTTGTCCACATTAAGTTTAATTTAAAATAGTCAATGAAAAGAGTGAAAATAAACATTTATGCGAAACTTCTAAATTAAAGTATAAATATACAAAATTCAAGAACCAAACTAGAATAAGAAATTTCAAAGACCAAAGTTGTAACAATCTAGATCCAACTTTTTCAAAAAAAAAAAAAAAAAAATCTAGGATCCAAGAAGTGAATTTTAATCAGAAAATTAACATCAAATAATTTTTTTGGTTGAGAACAAGATGTACTTAAGAGATTCGAGATTAAAAAAAAAGAAAATATATAGAATTGAGTGTAAAGCGTCTGTAGGTAACTTTTTAAGTTTGCTATCAAAATTAATTAGTATGAAAATCACTAGATTAAAAAAAAAAAAGTTAGAAAGTAATTTCTAATTTAACAAAGAAGCATCTACTCTTATGATTCTCAAATCCCAAAAACTACTTTTTTTTTTTAGAATAATTTAACACATGCATTTAAGAAATTTTAGACACATGTGATCTAAACTACTTTTTTTTTTTTTTTTTGAGAATATCTAAACTACTATTTTATTAACATGATTCTCTATTAACATGATACTCTATCATGTGCATGAGAATTGAGATGTCTATAATATTTATTTATTTATATATATTAGACAAAAGAAAAATAAAAAAATATATATGTTTCTCCTTTTGTTGAACTACAAAATGAAAAGAAAATGTTTTAAATATATGATCTCAATTATTTCATGAAGATAAATTCTCTTAAACGATAAAGAGAAGACTCAGAAGAGAACAATTTTTTTTTTTTAATTATTGTCTATAAAAGAGACTCACTTCCTTGTTGCACATAATAATAATAATAATTTTTTTTCAAAAAAAAAAAAAAAAAAAACAATGCATGTTATAGAAAATACGGTTTATTGAAATAAAATTAAAAAAAAAAATTCTTATCGAATCACTTTCATGAGGTCAAAATGGACTATTTTGTCTGATAAAATTGTTTCTAAAAACATTCCGAATTAGGTATAAATTTAAGAAAATTAATATTATAGTCCACTCTGGTCTTTGCTAAATTTGTTATTATAAAATTCAGAATTATTTAAAATCTTCACCAAATTATGATTAAAAAGTACAGGTGTTTAAAAAAAAAATAAAATAAAAGTATAGGGAAAAAGCTATTTGTTGAATTTTTTTAATGTTTTTTTTTCTGACAAAATGTAAATTGAGGGATATGAACCTTTAACATTTTGGTCGATGGTGCAGACTTTATACCAGTTGTACTATACTCATTATTATAGGCAATTTTGGACCACCCTGATATACAAGGAGCTGACGAGGATAACCGGGGAGAAATCGGGCTGAAAGATGGACCAATGAGGCAAAATCGGCAAGTGGGACGGGCCAAGACCGAAGGGGTCGGGTTTTTGGCCCGACCCCCTGCTCGGCCTCGGCCCATGGGCCGAGGCCGAGGGCCGAGTCCGTTCGATGCCGTTTGGTCCCCACCGCCTTTGGCCGCCTCGGTTTCGCCTGGTTTGACCTAA

mRNA sequence

ATGGCGATTCAGAGACTAGAACTCTGCTTGGAGTTGCTGAGAATGGCCGTCAATTTCGTCGTCGTCGTCGCCGAATCCGTCGGCGAGGTCATCCACCAGGAGTCCCAGCCGCCGCACCGGCCTGCGGCTACTCCTAGGGTTCCGATTCCGTTCGCAATTTTGGACCACCCTGATATACAAGGAGCTGACGAGGATAACCGGGGAGAAATCGGGCTGAAAGATGGACCAATGAGGCAAAATCGGCAAGTGGGACGGGCCAAGACCGAAGGGGTCGGGTTTTTGGCCCGACCCCCTGCTCGGCCTCGGCCCATGGGCCGAGGCCGAGGGCCGAGTCCGTTCGATGCCGTTTGGTCCCCACCGCCTTTGGCCGCCTCGGTTTCGCCTGGTTTGACCTAA

Coding sequence (CDS)

ATGGCGATTCAGAGACTAGAACTCTGCTTGGAGTTGCTGAGAATGGCCGTCAATTTCGTCGTCGTCGTCGCCGAATCCGTCGGCGAGGTCATCCACCAGGAGTCCCAGCCGCCGCACCGGCCTGCGGCTACTCCTAGGGTTCCGATTCCGTTCGCAATTTTGGACCACCCTGATATACAAGGAGCTGACGAGGATAACCGGGGAGAAATCGGGCTGAAAGATGGACCAATGAGGCAAAATCGGCAAGTGGGACGGGCCAAGACCGAAGGGGTCGGGTTTTTGGCCCGACCCCCTGCTCGGCCTCGGCCCATGGGCCGAGGCCGAGGGCCGAGTCCGTTCGATGCCGTTTGGTCCCCACCGCCTTTGGCCGCCTCGGTTTCGCCTGGTTTGACCTAA

Protein sequence

MAIQRLELCLELLRMAVNFVVVVAESVGEVIHQESQPPHRPAATPRVPIPFAILDHPDIQGADEDNRGEIGLKDGPMRQNRQVGRAKTEGVGFLARPPARPRPMGRGRGPSPFDAVWSPPPLAASVSPGLT

Homology

[Close]

BLAST of Lag0001717 vs. NCBI nr
Match: KAA0031272.1 (hypothetical protein E6C27_scaffold139G00250 [Cucumis melo var. makuwa] >KGN43958.1 hypothetical protein Csa_017301 [Cucumis sativus] >TYK06724.1 hypothetical protein E5676_scaffold13G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 2.3e-10
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 1  MAIQRLELCLELLRMAVNFVVVVAESVGEVIHQESQPPHRPAATPRVPIPF 52
          M IQRLELCLELLRMA+NFVVVVAESVG+VIH+E QP   P A  RVP+PF
Sbjct: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPF 51

[Close]

BLAST of Lag0001717 vs. NCBI nr
Match: MBA0799196.1 (hypothetical protein [Gossypium harknessii])

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-04
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 1  MAIQRLELCLELLRMAVNFVVVVAESVGEVIHQESQPP----HRPAATPRVPI 50
          M +QRLE+C+EL+++AV FVVVVAE+VG VIHQ   PP     RP ATP VP+
Sbjct: 1  MVLQRLEICVELMKLAVEFVVVVAEAVGIVIHQNHSPPVMTASRPFATP-VPL 52

[Close]

BLAST of Lag0001717 vs. NCBI nr
Match: XP_015874275.1 (uncharacterized protein LOC107411246 [Ziziphus jujuba])

HSP 1 Score: 55.8 bits (133), Expect = 3.2e-04
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 1  MAIQRLELCLELLRMAVNFVVVVAESVGEVIHQESQPPHRPAATPRVPIPF 52
          M IQR+E+C+ELL+MA+ FV+VVAE+VG VIHQ   P    ++    P+PF
Sbjct: 1  MVIQRIEMCVELLKMAIEFVIVVAEAVGIVIHQNMSPAFIRSSAYPTPLPF 51

The following BLAST results are available for this feature:

BLAST of Lag0001717 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031272.1	2.3e-10	76.47	hypothetical protein E6C27_scaffold139G00250 [Cucumis melo var. makuwa] >KGN4395...	[more]
MBA0799196.1	1.9e-04	60.38	hypothetical protein [Gossypium harknessii]	[more]
XP_015874275.1	3.2e-04	52.94	uncharacterized protein LOC107411246 [Ziziphus jujuba]	[more]

BLAST of Lag0001717 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..131
None	No IPR available	PANTHER	PTHR37705	BNAA08G11710D PROTEIN	coord: 1..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001717.1	Lag0001717.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane