Lag0001708 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001708
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr4: 34536502 .. 34537485 (-)
RNA-Seq Expression	Lag0001708
Synteny	Lag0001708

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGGGTGATCAACGGGAAGAAGCTAGAGAAATGCCCGACGGTAATGGCAGCAGAGCTCCGATGGAACGATTACCCAGAAAAGGTACAAAAGTCCAAACGGTTACTGACAATGTGAGAGTAGAAAACGACAAAAAATAGAAAAAAGGGAAGAGGCTCATGCTGAGGGGTCAAATCAAAAGGAAAGAGGAGAGGATAGGGACACTGACAGAGAAAAAAAAGACCCAGAAAGAGGCCCAAAGCCAAGGAGATGGGCCAACCGACAATTTCTCAGCACCAAAAAATAAGGTACAGAGACATGGAAATAAGCCTTAGTGAGATGAAAACCAGCAAGGTTTTGACTCAAATAACTGAAAAGAAATAAGGGAAGCCAAGTTAGTTAGCGAAAACTCAGTAGGCTCAGAAGAAGATAGGAAAAAGCAAAGGAAATCGTGGAAAAGAAGAGCTCGAGAAGGAAGGATGGCAGAGGAGATTGAGAAAGGAAAACATCAACAACAGTCTACTAGAAAACATGAAAGGGAAGAACAGTGGGAGGAAGGGCAAGCAAAGAAGTTCCGATCAAACTACTTCGGCAATGCCGTTGGGATATCGGCGGAGGCTGCGGAGCAGCCCCGCCGGACGCCGTGAGGACGTTATTTTGGAACGTCCGGGGTTTGGGGAACCCCCGGCGGTCCGCAATTTAAAGCACGAAGTGCAGCAAATATCCCCTCAAATTGTGTTTTTAGCTGAAACTAAATGCACCGATAGTAGAGTAGAATTCATAAAGAGAATTCTGGTTTTTGATTACTGCTTTGCCGTGAACAGCAACGAGCAAAGTGGAGGTCTCGCGTTCTTGTGGAAGTCTGAGATTAATCTATGTGTCAAAAGCTACTCTTCAGGACATATAGATTCAATGGTTCAGTCTAGTAAAGGTTGGTGGAGGCTTACTGGCTTTTATGGAAATCTCGAAACATCCAAAAGGAAAGATTCTTGGAATCTTTGA

mRNA sequence

ATGGAAGGGGTGATCAACGGGAAGAAGCTAGAGAAATGCCCGACGGTAATGGCAGCAGAGCTCCGATGGAACGATTACCCAGAAAAGGCTCAGAAGAAGATAGGAAAAAGCAAAGGAAATCGTGGAAAAGAAGAGCTCGAGAAGGAAGGATGGCAGAGGAGATTGAGAAAGGAAAACATCAACAACAGTCTACTAGAAAACATGAAAGGGAAGAACAGTGGGAGGAAGGGCAAGCAAAGAAGTTCCGATCAAACTACTTCGGCAATGCCGTTGGGATATCGGCGGAGGCTGCGGAGCAGCCCCGCCGGACGCCGTGAGGACGTTATTTTGGAACGTCCGGGGTTTGGGGAACCCCCGGCGGTCCGCAATTTAAAGCACGAAGTGCAGCAAATATCCCCTCAAATTGTGTTTTTAGCTGAAACTAAATGCACCGATAGTAGAGTAGAATTCATAAAGAGAATTCTGGTTTTTGATTACTGCTTTGCCGTGAACAGCAACGAGCAAAGTGGAGGTCTCGCGTTCTTGTGGAAGTCTGAGATTAATCTATGTGTCAAAAGCTACTCTTCAGGACATATAGATTCAATGGTTCAGTCTAGTAAAGGTTGGTGGAGGCTTACTGGCTTTTATGGAAATCTCGAAACATCCAAAAGGAAAGATTCTTGGAATCTTTGA

Coding sequence (CDS)

ATGGAAGGGGTGATCAACGGGAAGAAGCTAGAGAAATGCCCGACGGTAATGGCAGCAGAGCTCCGATGGAACGATTACCCAGAAAAGGCTCAGAAGAAGATAGGAAAAAGCAAAGGAAATCGTGGAAAAGAAGAGCTCGAGAAGGAAGGATGGCAGAGGAGATTGAGAAAGGAAAACATCAACAACAGTCTACTAGAAAACATGAAAGGGAAGAACAGTGGGAGGAAGGGCAAGCAAAGAAGTTCCGATCAAACTACTTCGGCAATGCCGTTGGGATATCGGCGGAGGCTGCGGAGCAGCCCCGCCGGACGCCGTGAGGACGTTATTTTGGAACGTCCGGGGTTTGGGGAACCCCCGGCGGTCCGCAATTTAAAGCACGAAGTGCAGCAAATATCCCCTCAAATTGTGTTTTTAGCTGAAACTAAATGCACCGATAGTAGAGTAGAATTCATAAAGAGAATTCTGGTTTTTGATTACTGCTTTGCCGTGAACAGCAACGAGCAAAGTGGAGGTCTCGCGTTCTTGTGGAAGTCTGAGATTAATCTATGTGTCAAAAGCTACTCTTCAGGACATATAGATTCAATGGTTCAGTCTAGTAAAGGTTGGTGGAGGCTTACTGGCTTTTATGGAAATCTCGAAACATCCAAAAGGAAAGATTCTTGGAATCTTTGA

Protein sequence

MEGVINGKKLEKCPTVMAAELRWNDYPEKAQKKIGKSKGNRGKEELEKEGWQRRLRKENINNSLLENMKGKNSGRKGKQRSSDQTTSAMPLGYRRRLRSSPAGRREDVILERPGFGEPPAVRNLKHEVQQISPQIVFLAETKCTDSRVEFIKRILVFDYCFAVNSNEQSGGLAFLWKSEINLCVKSYSSGHIDSMVQSSKGWWRLTGFYGNLETSKRKDSWNL

Homology

[Close]

BLAST of Lag0001708 vs. NCBI nr
Match: XP_042952137.1 (uncharacterized protein LOC122289225 [Carya illinoinensis])

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-19
Identity = 53/112 (47.32%), Postives = 72/112 (64.29%), Query Frame = 0


Query: 114 GFGEPPAVRNLKHEVQQISPQIVFLAETKCTDSRVEFIKRILVFDYCFAVNSNEQSGGLA 173
           G G P AVR L   +++  P +VFL ETKC+ SR+E +K +  FDYC AV+S   SGGLA
Sbjct: 10  GLGNPQAVRILNMIIKEKFPSLVFLVETKCSRSRIESVKHLTKFDYCLAVDSMGSSGGLA 69

Query: 174 FLWKSEINLCVKSYSSGHIDSMVQSSK--GWWRLTGFYGNLETSKRKDSWNL 224
            +WK+ + + + S++  HI  M+   +    W LTGFYG+  TSKRK SWNL
Sbjct: 70  MMWKNNLEVQLVSFTRWHISVMIADKRHNTPWMLTGFYGHPVTSKRKLSWNL 121

[Close]

BLAST of Lag0001708 vs. NCBI nr
Match: XP_042939392.1 (uncharacterized protein LOC122274417 [Carya illinoinensis])

HSP 1 Score: 107.5 bits (267), Expect = 1.6e-19
Identity = 57/112 (50.89%), Postives = 69/112 (61.61%), Query Frame = 0


Query: 114 GFGEPPAVRNLKHEVQQISPQIVFLAETKCTDSRVEFIKRILVFDYCFAVNSNEQSGGLA 173
           G G P  V  L   VQ  SP+ VFL ETK   ++VE +KR L FD  F VNS   SGGLA
Sbjct: 10  GLGNPRTVNKLHLMVQNKSPKFVFLMETKSNRTKVEAVKRRLQFDNSFVVNSRGTSGGLA 69

Query: 174 FLWKSEINLCVKSYSSGHIDSMVQSSKGW--WRLTGFYGNLETSKRKDSWNL 224
           FLWK ++   V SY+  HI  +V+  KG   W LTGFYGN  T+KR++SW L
Sbjct: 70  FLWKDDMEAEVVSYTQNHISLIVKGMKGGIPWHLTGFYGNPMTAKRQESWLL 121

[Close]

BLAST of Lag0001708 vs. NCBI nr
Match: XP_019159671.1 (PREDICTED: uncharacterized protein LOC109156272 [Ipomoea nil])

HSP 1 Score: 106.7 bits (265), Expect = 2.7e-19
Identity = 53/112 (47.32%), Postives = 75/112 (66.96%), Query Frame = 0


Query: 114 GFGEPPAVRNLKHEVQQISPQIVFLAETKCTDSRVEFIKRILVFDYCFAVNSNEQSGGLA 173
           G G P A++ L   V Q  P ++FL ETK    R+E ++  L FD CF V+++E  GGLA
Sbjct: 10  GLGNPLAIQFLMGLVYQRRPNVIFLCETKADARRLEQVRVKLRFDNCFVVDADEGRGGLA 69

Query: 174 FLWKSEINLCVKSYSSGHIDSMVQSSKGW--WRLTGFYGNLETSKRKDSWNL 224
            LW S I++ V+ YS+ +IDS+V   +G+  WRLTG+YGN E S+R++SWNL
Sbjct: 70  LLWNSGIDVEVRGYSNHYIDSIVTGKEGFTRWRLTGYYGNPEWSRRRESWNL 121

[Close]

BLAST of Lag0001708 vs. NCBI nr
Match: XP_042988712.1 (uncharacterized protein LOC122316247 [Carya illinoinensis])

HSP 1 Score: 105.9 bits (263), Expect = 4.5e-19
Identity = 48/111 (43.24%), Postives = 77/111 (69.37%), Query Frame = 0


Query: 114 GFGEPPAVRNLKHEVQQISPQIVFLAETKCTDSRVEFIKRILVFDYCFAVNSNEQSGGLA 173
           G G P  VR L+  V++  P ++FL ETK   +++E +KR+L ++ CFAV+S  +SGGLA
Sbjct: 10  GLGNPRGVRALRDLVRKEVPMVLFLQETKLHVTKMECVKRLLGYECCFAVSSEGRSGGLA 69

Query: 174 FLWKSEINLCVKSYSSGHIDSMVQSSK--GWWRLTGFYGNLETSKRKDSWN 223
            +W+ E NL V+SYS  HID+++ +++  G W+ TG YG+ +T  R+++WN
Sbjct: 70  LMWQEETNLNVQSYSKNHIDALIHNAEHDGQWQFTGVYGHPDTELRQETWN 120

[Close]

BLAST of Lag0001708 vs. NCBI nr
Match: XP_022157437.1 (uncharacterized protein LOC111024135 [Momordica charantia])

HSP 1 Score: 105.9 bits (263), Expect = 4.5e-19
Identity = 53/111 (47.75%), Postives = 68/111 (61.26%), Query Frame = 0


Query: 113 PGFGEPPAVRNLKHEVQQISPQIVFLAETKCTDSRVEFIKRILVFDYCFAVNSNEQSGGL 172
           PG G P   R L++ V++  PQ+VFL+ETK   +     KR L FD C +V S  +SGGL
Sbjct: 9   PGLGNPDTFRTLRNLVRRSQPQLVFLSETKGNPTLEGRAKRELSFDCCVSVASTGKSGGL 68

Query: 173 AFLWKSEINLCVKSYSSGHIDSMVQSSKGWWRLTGFYGNLETSKRKDSWNL 224
             LW S+ N+ ++S S GHIDS++    G WR TGFYGN  T KR  SW L
Sbjct: 69  MLLWNSDSNVRIQSMSPGHIDSIITDKYGSWRFTGFYGNPCTYKRSASWKL 119

[Close]

BLAST of Lag0001708 vs. ExPASy TrEMBL
Match: A0A2N9I611 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47331 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 7.5e-20
Identity = 50/110 (45.45%), Postives = 73/110 (66.36%), Query Frame = 0


Query: 114 GFGEPPAVRNLKHEVQQISPQIVFLAETKCTDSRVEFIKRILVFDYCFAVNSNEQSGGLA 173
           G G P AVR L+   +  +P+++FL+ETK     +E+I+  L +D  F V S  +SGGLA
Sbjct: 280 GLGNPRAVRTLRDLQKMKAPKVLFLSETKLNVEEMEWIRVGLKYDSAFVVPSKGRSGGLA 339

Query: 174 FLWKSEINLCVKSYSSGHIDSMVQSSKGWWRLTGFYGNLETSKRKDSWNL 224
            LW  +++L + SY+  HID+ ++S +G WR TGFYG+ ET+KRK SW L
Sbjct: 340 LLWDEDVDLSITSYTRFHIDAQIKSQEGLWRFTGFYGHPETAKRKGSWAL 389

[Close]

BLAST of Lag0001708 vs. ExPASy TrEMBL
Match: A0A6J1DUG8 (uncharacterized protein LOC111024135 OS=Momordica charantia OX=3673 GN=LOC111024135 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.2e-19
Identity = 53/111 (47.75%), Postives = 68/111 (61.26%), Query Frame = 0


Query: 113 PGFGEPPAVRNLKHEVQQISPQIVFLAETKCTDSRVEFIKRILVFDYCFAVNSNEQSGGL 172
           PG G P   R L++ V++  PQ+VFL+ETK   +     KR L FD C +V S  +SGGL
Sbjct: 9   PGLGNPDTFRTLRNLVRRSQPQLVFLSETKGNPTLEGRAKRELSFDCCVSVASTGKSGGL 68

Query: 173 AFLWKSEINLCVKSYSSGHIDSMVQSSKGWWRLTGFYGNLETSKRKDSWNL 224
             LW S+ N+ ++S S GHIDS++    G WR TGFYGN  T KR  SW L
Sbjct: 69  MLLWNSDSNVRIQSMSPGHIDSIITDKYGSWRFTGFYGNPCTYKRSASWKL 119

[Close]

BLAST of Lag0001708 vs. ExPASy TrEMBL
Match: A0A2N9G1M2 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21081 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.9e-19
Identity = 55/115 (47.83%), Postives = 73/115 (63.48%), Query Frame = 0


Query: 110 LERPGFGEPPAVRNLKHEVQQISPQIVFLAETKCTDSRVEFIKRILVFDYCFAVNSNEQS 169
           LE  G G P AVR L H V++  P+++FL ETK    R+E I+  L FD  F V S  +S
Sbjct: 468 LEYCGLGNPEAVRALHHMVKKKGPEVLFLMETKLDAGRMEVIRVKLGFDNTFTVPSLGRS 527

Query: 170 GGLAFLWKSEINLCVKSYSSGHIDSMVQSSKG-WWRLTGFYGNLETSKRKDSWNL 224
           GGLA LWK++  + +++YS  HID+ V S K   WRLTGFYG  E  +R++SW L
Sbjct: 528 GGLALLWKADAEVVIQNYSQHHIDAHVDSKKAKCWRLTGFYGRPEQHRRRESWAL 582

[Close]

BLAST of Lag0001708 vs. ExPASy TrEMBL
Match: A0A2I4FJD0 (uncharacterized protein LOC108999324 OS=Juglans regia OX=51240 GN=LOC108999324 PE=4 SV=2)

HSP 1 Score: 104.8 bits (260), Expect = 4.9e-19
Identity = 51/112 (45.54%), Postives = 69/112 (61.61%), Query Frame = 0


Query: 114 GFGEPPAVRNLKHEVQQISPQIVFLAETKCTDSRVEFIKRILVFDYCFAVNSNEQSGGLA 173
           G G P  V  L   V + SP  VFL ETKC+ +R+E +K+ L  D  F ++   + GGLA
Sbjct: 10  GLGNPQTVHELHLLVLKKSPAFVFLMETKCSRNRIESLKKSLKLDNSFVIDCKGRKGGLA 69

Query: 174 FLWKSEINLCVKSYSSGHIDSMVQSSKGW--WRLTGFYGNLETSKRKDSWNL 224
           FLW+ E+   V +Y+  HI  MV+ ++G   W LTGFYGN  TS+RK+SW L
Sbjct: 70  FLWRDEVEAVVHTYTQHHISLMVKGAEGGKEWLLTGFYGNPNTSRRKESWQL 121

[Close]

BLAST of Lag0001708 vs. ExPASy TrEMBL
Match: A0A2N9G1F9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21082 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.4e-19
Identity = 53/111 (47.75%), Postives = 71/111 (63.96%), Query Frame = 0


Query: 114 GFGEPPAVRNLKHEVQQISPQIVFLAETKCTDSRVEFIKRILVFDYCFAVNSNEQSGGLA 173
           G G P AVR L H V++  P+++FL ETK    R+E I+  L FD  F V S  +SGGLA
Sbjct: 495 GLGNPEAVRALHHMVKKKGPEVLFLMETKLDAGRMEVIRVKLGFDNTFTVPSLGRSGGLA 554

Query: 174 FLWKSEINLCVKSYSSGHIDSMVQSSKG-WWRLTGFYGNLETSKRKDSWNL 224
            LWK++  + +++YS  HID+ V S K   WRLTGFYG  E  +R++SW L
Sbjct: 555 LLWKADAEVVIQNYSQHHIDAHVDSKKAKCWRLTGFYGRPEQHRRRESWAL 605

The following BLAST results are available for this feature:

BLAST of Lag0001708 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_042952137.1	1.2e-19	47.32	uncharacterized protein LOC122289225 [Carya illinoinensis]	[more]
XP_042939392.1	1.6e-19	50.89	uncharacterized protein LOC122274417 [Carya illinoinensis]	[more]
XP_019159671.1	2.7e-19	47.32	PREDICTED: uncharacterized protein LOC109156272 [Ipomoea nil]	[more]
XP_042988712.1	4.5e-19	43.24	uncharacterized protein LOC122316247 [Carya illinoinensis]	[more]
XP_022157437.1	4.5e-19	47.75	uncharacterized protein LOC111024135 [Momordica charantia]	[more]

BLAST of Lag0001708 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0001708 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9I611	7.5e-20	45.45	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47331 PE=4 SV=1	[more]
A0A6J1DUG8	2.2e-19	47.75	uncharacterized protein LOC111024135 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A2N9G1M2	2.9e-19	47.83	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21081 PE=4 SV=1	[more]
A0A2I4FJD0	4.9e-19	45.54	uncharacterized protein LOC108999324 OS=Juglans regia OX=51240 GN=LOC108999324 P...	[more]
A0A2N9G1F9	6.4e-19	47.75	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21082 PE=4 SV=1	[more]

BLAST of Lag0001708 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 113..223 e-value: 2.1E-7 score: 33.0
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 121..221
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001708.1	Lag0001708.1	mRNA