Lag0001677 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001677
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ethylene receptor
Location	chr4: 34219414 .. 34222711 (+)
RNA-Seq Expression	Lag0001677
Synteny	Lag0001677

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCGACGAGAGAAGGGGTTTTCAGGTGATTTTGCATATGGTGGTAGCCTATTAAATGACATCAACAAGGGAGGAGGATATGCTTTGTTTCGGGTTGTAGCCGAGAGTGGAAGTCAGAGAAAGGAATGACCAAAGATGGGGTAACTGGAGACAAAGCTCATATGATGGAGATTCGTGTATCATATTTGAGATTGGGATATACAAGAGTAACTCTCAAACAGAGGGCTCGATGCCAAACATGGTATCTGGTGATCAGAGATATGCTAGTGATGGAGCCGAGGAGTGCTTGAGTTTTACCATCTGCAAGAAGCTCGTTAAGGTCAGTTTTCTATATTACGTTTTAGTATAACCCTTCTACTCAGTCATTTTGTTGAACTTCTTGAAACTATTAAGATTGAAGGTAGAGATCTTGCATTTTCTCCTTCAGCCTTGGGTTTCTTCTGCTACAATAGTCTGTTAAAAAGAAGATAAAAAATAAACTTTCGGAGTCCTTTTTCTTGATTTGGTTTGATTAGCTTTAGCTTTTATCATTTCTTGCTCTGAAGTTTTGACCAATTGAAACTGCTATGATGTGGTGGGGTTATTAGAGTTGTTTATTCGTTTATTGTTGCTTACTGCTTACTACAACTTGTTATACCAAGACCTTCTGACCACACAACATAGAGTCTCAGATATCACAAACCAAGCAACAAACACACCGAGAAAACTGATATTTCAGCAAGCACAGTCCAGCAAGCTTAAACCAGAACACAACAAACAACTCATAAAACCAGAATATGTAAACAGAGGATAGGGAAAGAAGAGAACACAGAAGTTTTATAGTGGTTCGTTCCTTATAAACGGAACTACATCCACTTTAGGCCATTTCACTAGATTATTGACAAGGTTACAAGTTTACCAGAGATACAACTCTTCTTCAAGGATCAATACAGATTTAAGCAAAAAACAATCTCACCTGGATCGAAACAATCTGCATATACAAACTTGAAACAAAACAGAGATGAAGAAGAAGACTCTCACAACAACCCAAGTGCATCAGCTTCTTCCTTCAGCCCTCTCGCAAAAGCAGACTCTCTCGCACTCTCTTGCTCTCTCTCGGAAATAATCCTTCACAGCTTGATTTATCATCCTCTGATAACCGAATGGAGCCCACACTTTCTTCCATTTTAAATCCCCCAAAAAACGCCTTGCCAGAACAACAGAAATTTAGCTTGACAGTAACTAACTCGTACGACCATGTGCTGAAATTCCTCCTTGGGTTTTTATTCACCATCTTCTAATTTCACCAGATGAGGTAAAAGACCCAAGCTCCAGCTGACTCATCAGTACTCAGCTTACTAATCCCTCTAAGGCTGACTGGGATTTAAAAAGTGTACAGGTGGCACCTCACATTTGACTTATATTAGCAAAGAAATCAACACAACTGAACAAATGATAGTTTGGATTTTGGATTTCAATCTATAAACTTAACAATTTTTACTTTCAACTTTTAGCACAAAAGTTCTTTTTTCTTTCTTGAATTTCTGTCTGGTGAAAGATTTGTTTAGTTTCAAGGTCTTTGGCATGGATATCTCATGCTTACCAAACTTTTCCTATTCCATTTAGACGTTTTGTGCAAGCTACTATTTTTAGTCTTTAAAAGTAGCCGTTTTCTTTTACCATCATCCTTTTTCTTTTTTCGTTTATTTTTTCGTTTTGTGCACCTACTTATAATATTCATATTATGAGTTTTAATTGTATTTTATTTTTTTAACTTTTAACGTTACAATTTCAATAGCTTTATTGTAGGACTGACCGAGTTGCATAATCTTTATCTCATGCATATATATGGTTTCATTTAGATCCGCATTTCATTGTCACGTGTTTCTTTTCATTCAAGCAACTGCCGACAATAAATGTAGTGTACTACTTTGGAATAGTCAGAGATGTTATGAATGGCGTCAATTTTCTAACCAAGATTGTCATAGTAAAAAACTAAGTACATATGACTTAAAAGATCGAGCACTTACAATAAAATATTTATAAAATAGTAAAATGCATGGAAATTGTGATAGTCAATTATATGGTTGTGTTGTGGGTGCATTTCAGCTTCATGATCCATAAAGTTTAAGTTTTTTTTTAATCATACTGGTAAATTCTGCGAATGATTTTCAGCTTTATGGTTATATATCTTCCAAGTATTGTAGATTACTCCCGACCTTCATTGCTTTTCACTGCATGTATGGTCATCTCTTTCTTTTTTTTATTTTTTGAAAAAGGTCATCTCTTTCTTTTTATGCTGCATCCAGATTTGGTCCTAAAGACGGGTATAACTATACCAGCCGGAACATTAGTTGTTGTACCCGTAAAATTGGTACAGGTTGATAATTCAAGTTGGGGAGGTGATGCCAATGAGTTCAATCCCTACCGTTTTTTATCAATGGCTTGCAATGGGACTGATACAACTCAGCGAACATCACTTGCAGGTATGGTACTTCATGCTTAAATACTTATCCTAGCATAAATGTGTAATCTACTTAGCAACTCGGTGTCTACTTTTGTTTAGCTCCTTCATTTGATCCTCTTTCGAAGTGTGATACTCAACTCAAGGGCAGCGGAGTGGGATAATTAGTTTTGTGGGAATTGGCTATATTTTGATTTTTGAAAAATACGACTCATGAGTGACAGTGGTCAAGACCTCATTTTTTGGGCCTCCATATGAAGTATGATGAGGATTCAATTATTTCCCATTCTCTCCCTTTTACCCCCACCCTCTATCCCAACAGTAGAGAATGTAATATGAAGTCTTTTGTCTTCATCCTTTTTTTTTGTTTTTAAATTTTATTTTTATTTATTTTATTGTTTTTTTATTGGAATGCATCTTTAGTTTTTACTTTCTTTGAATTTTGGTCTAGAACTTTTCTTGGGATTGGGTTCTTTGTCCATTCGAACACATTATTTTCCTTCCAATCTTGACTGGGAAGAGGGGGGGGGGGCTAGCGGAAGCCCTGCCCACCCTTGTCTCTATGTTTAACCATATAATGTTTTCTCTTAAGAAAGAAGCATACAGAAAAGTGCAATTTGGAATTCTGATGATGTGGTTTTAGCCCAATTTATTGTGATAAAATGATCTAGATTGTGCGTTAATGTGCTATTTCTTTTCATCACACTTGTATTGTCGTGCAGCAGGTGAAAATGCTGGGATCAAGGACAACGTTCATTTGTTTTCAACAATCCAATTGGCAATGTTGGATTTCTTCCCTTTGGCTTTGGTGCACGTGCCTGTGTTGGTCAAAAATTTATCATACACGGAGTAG

mRNA sequence

ATGGGCGACGAGAGAAGGGGTTTTCAGCCGAGAGTGGAAGTCAGAGAAAGGAATGACCAAAGATGGGGTAACTGGAGACAAAGCTCATATGATGGAGATTCGTGTATCATATTTGAGATTGGGATATACAAGAGTAACTCTCAAACAGAGGGCTCGATGCCAAACATGGTATCTGGTGATCAGAGATATGCTAGTGATGGAGCCGAGGAGTGCTTGAGTTTTACCATCTGCAAGAAGCTCGTTAAGGTTGATAATTCAAGTTGGGGAGGTGATGCCAATGAGTTCAATCCCTACCGTTTTTTATCAATGGCTTGCAATGGGACTGATACAACTCAGCGAACATCACTTGCAGCAGGTGAAAATGCTGGGATCAAGGACAACGTTCATTTGTTTTCAACAATCCAATTGGCAATGTTGGATTTCTTCCCTTTGGCTTTGGTGCACGTGCCTGTGTTGGTCAAAAATTTATCATACACGGAGTAG

Coding sequence (CDS)

ATGGGCGACGAGAGAAGGGGTTTTCAGCCGAGAGTGGAAGTCAGAGAAAGGAATGACCAAAGATGGGGTAACTGGAGACAAAGCTCATATGATGGAGATTCGTGTATCATATTTGAGATTGGGATATACAAGAGTAACTCTCAAACAGAGGGCTCGATGCCAAACATGGTATCTGGTGATCAGAGATATGCTAGTGATGGAGCCGAGGAGTGCTTGAGTTTTACCATCTGCAAGAAGCTCGTTAAGGTTGATAATTCAAGTTGGGGAGGTGATGCCAATGAGTTCAATCCCTACCGTTTTTTATCAATGGCTTGCAATGGGACTGATACAACTCAGCGAACATCACTTGCAGCAGGTGAAAATGCTGGGATCAAGGACAACGTTCATTTGTTTTCAACAATCCAATTGGCAATGTTGGATTTCTTCCCTTTGGCTTTGGTGCACGTGCCTGTGTTGGTCAAAAATTTATCATACACGGAGTAG

Protein sequence

MGDERRGFQPRVEVRERNDQRWGNWRQSSYDGDSCIIFEIGIYKSNSQTEGSMPNMVSGDQRYASDGAEECLSFTICKKLVKVDNSSWGGDANEFNPYRFLSMACNGTDTTQRTSLAAGENAGIKDNVHLFSTIQLAMLDFFPLALVHVPVLVKNLSYTE

Homology

[Close]

BLAST of Lag0001677 vs. NCBI nr
Match: NP_001295769.1 (ethylene receptor 2 precursor [Cucumis sativus] >AJR29339.1 ethylene receptor ETR2-2 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 8.3e-23
Identity = 63/108 (58.33%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 1   MGDERRGFQPRVEV-------------------------RERNDQRWGNWRQSSYDGDSC 60
           MGDERR FQ  + +                         + RNDQRWGNWRQ+S DGD+ 
Sbjct: 481 MGDERRVFQVLLHMVGSLLNDINQGGGYALFRVVAESGSQGRNDQRWGNWRQNSSDGDAF 540

Query: 61  IIFEIGIYKSNSQTEGSMPNMVSGDQRYASDGAEECLSFTICKKLVKV 84
           I FE+GI KSNSQ+EGS+PNMVSGD+RYASDGAEE LSFTICKKLVK+
Sbjct: 541 IRFEVGINKSNSQSEGSIPNMVSGDRRYASDGAEERLSFTICKKLVKL 588

[Close]

BLAST of Lag0001677 vs. NCBI nr
Match: BAF91863.1 (ethylene receptor [Cucumis melo var. cantalupo] >BAF91864.1 ethylene receptor [Cucumis melo var. cantalupo])

HSP 1 Score: 117.9 bits (294), Expect = 8.3e-23
Identity = 64/108 (59.26%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 1   MGDERRGFQPRVEV-------------------------RERNDQRWGNWRQSSYDGDSC 60
           MGDERR FQ  + +                         + RNDQRWGNWRQSS DGD+ 
Sbjct: 481 MGDERRVFQVLLHMVGSLLNDINQGGGYALFRVVAESGSQGRNDQRWGNWRQSSSDGDAF 540

Query: 61  IIFEIGIYKSNSQTEGSMPNMVSGDQRYASDGAEECLSFTICKKLVKV 84
           I FEIGI KSNSQ+EGS+PN+VSGD+RYASDGAEE LSFTICKKLVK+
Sbjct: 541 IRFEIGINKSNSQSEGSIPNVVSGDRRYASDGAEERLSFTICKKLVKL 588

[Close]

BLAST of Lag0001677 vs. NCBI nr
Match: BAA85819.1 (ethylene receptor CS-ETR2 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 8.3e-23
Identity = 63/108 (58.33%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 1   MGDERRGFQPRVEV-------------------------RERNDQRWGNWRQSSYDGDSC 60
           MGDERR FQ  + +                         + RNDQRWGNWRQ+S DGD+ 
Sbjct: 481 MGDERRVFQVLLHMVGSLLNDINQGGGYALFRVVAESGSQGRNDQRWGNWRQNSSDGDAF 540

Query: 61  IIFEIGIYKSNSQTEGSMPNMVSGDQRYASDGAEECLSFTICKKLVKV 84
           I FE+GI KSNSQ+EGS+PNMVSGD+RYASDGAEE LSFTICKKLVK+
Sbjct: 541 IRFEVGINKSNSQSEGSIPNMVSGDRRYASDGAEERLSFTICKKLVKL 588

[Close]

BLAST of Lag0001677 vs. NCBI nr
Match: XP_004134082.1 (ethylene receptor 2 isoform X1 [Cucumis sativus] >XP_031737452.1 ethylene receptor 2 isoform X1 [Cucumis sativus] >XP_031737453.1 ethylene receptor 2 isoform X1 [Cucumis sativus] >KGN56889.1 hypothetical protein Csa_010306 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 8.3e-23
Identity = 63/108 (58.33%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 1   MGDERRGFQPRVEV-------------------------RERNDQRWGNWRQSSYDGDSC 60
           MGDERR FQ  + +                         + RNDQRWGNWRQ+S DGD+ 
Sbjct: 481 MGDERRVFQVLLHMVGSLLNDINQGGGYALFRVVAESGSQGRNDQRWGNWRQNSSDGDAF 540

Query: 61  IIFEIGIYKSNSQTEGSMPNMVSGDQRYASDGAEECLSFTICKKLVKV 84
           I FE+GI KSNSQ+EGS+PNMVSGD+RYASDGAEE LSFTICKKLVK+
Sbjct: 541 IRFEVGINKSNSQSEGSIPNMVSGDRRYASDGAEERLSFTICKKLVKL 588

[Close]

BLAST of Lag0001677 vs. NCBI nr
Match: NP_001284468.1 (ethylene receptor precursor [Cucumis melo] >AHN92213.1 ethylene receptor 2a [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-22
Identity = 63/108 (58.33%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 1   MGDERRGFQPRVEV-------------------------RERNDQRWGNWRQSSYDGDSC 60
           MGDERR FQ  + +                         + RNDQRWGNWRQSS DGD+ 
Sbjct: 481 MGDERRVFQVLLHMVGSLLNDINQGGGYALFRVVAESGSQGRNDQRWGNWRQSSSDGDAF 540

Query: 61  IIFEIGIYKSNSQTEGSMPNMVSGDQRYASDGAEECLSFTICKKLVKV 84
           I FE+GI KSNSQ+EGS+PN+VSGD+RYASDGAEE LSFTICKKLVK+
Sbjct: 541 IRFEVGINKSNSQSEGSIPNVVSGDRRYASDGAEERLSFTICKKLVKL 588

The following BLAST results are available for this feature:

BLAST of Lag0001677 vs. NCBI nr


Match Name	E-value	Identity	Description
NP_001295769.1	8.3e-23	58.33	ethylene receptor 2 precursor [Cucumis sativus] >AJR29339.1 ethylene receptor ET...	[more]
BAF91863.1	8.3e-23	59.26	ethylene receptor [Cucumis melo var. cantalupo] >BAF91864.1 ethylene receptor [C...	[more]
BAA85819.1	8.3e-23	58.33	ethylene receptor CS-ETR2 [Cucumis sativus]	[more]
XP_004134082.1	8.3e-23	58.33	ethylene receptor 2 isoform X1 [Cucumis sativus] >XP_031737452.1 ethylene recept...	[more]
NP_001284468.1	1.1e-22	58.33	ethylene receptor precursor [Cucumis melo] >AHN92213.1 ethylene receptor 2a [Cuc...	[more]

BLAST of Lag0001677 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001677.1	Lag0001677.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048856	anatomical structure development
biological_process	GO:0010105	negative regulation of ethylene-activated signaling pathway
biological_process	GO:0018106	peptidyl-histidine phosphorylation
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0051740	ethylene binding
molecular_function	GO:0038199	ethylene receptor activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000155	phosphorelay sensor kinase activity