Lag0001672 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0001672
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionphospholipase A-2-activating protein
Locationchr4: 34160661 .. 34164084 (-)
RNA-Seq ExpressionLag0001672
SyntenyLag0001672
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATCAATCAGAGGGGTTTTGACGGAAGGAGAAGTTTCTGAAAGTTTCAAGAACACCGATTTTGAGGAGAAAAGCCCCGACTTCTCTAGACTCCATAAAGTCTCATCTCCGCCTCCACCCAGTCTAATAGCATCAATGATCTCAATCAGCCTGACCCAGCTAGGAATCTCCCAATCAAAAAGACCTCTTCTAAACCCCAAATTCCTGTCATTTGACTCTGAATTCCAGCATTGCTCAACATGGCCTCTTGCCTCATGGAAATATTAAACAAGTCAGGGAAGGTGGAGGCTAAACTATCGTTCCCAACCCATATGTCCTTCCAAAAACGAACTTTAGAGCCCTCATTCACTTTATATCTAATGAAGTTGTTGAACCATATCCCAGTTTTCATAATATCGAACCAAGGTCTACCTTTAGCTTTGCCTTTCGGGGGAAGAGTACACCATCCTCTTTGATCTAGACCATAAATACTGACCACAACTTTCCTCCATAAGGCATCTTCTTGTTGGCTAAAGTGCCACAACCATTTTGAAAGCAAGGCATTATTTTTCTGTTTATAAGCTCCAACCCCCAGGCCTCCAATACTCAAAGGAAGGGAGGTCTTGTCCCAATTAACCAAGGTTCCCTACAAAGTTTATATATATATATATATATATATATATATGATTTCTTCCATTTTTTAATCTTAACAATTGCAACCTTGTTAGTTAGGTGTTAATCTTTTGGATAGGAGACCCTTTTTTGTAGTTTGTTGCGCCTTTTAATTTTATTTTTTATGTCCTTATATATTCTCTCATTTCTCTTAATGAAAGCTCAGTTTCTTACCAAAAAAGAAAGGAAAAAAATGTGAATTAAAGTTGGTTTTTGTTGTAGCTATTTCTGAGCATGAACTTACAACTCTTTTTGTAGTTATAGAACTACCATGCAGTACCCTTGTACCCAGTGAAAGGCTCTTTGTTGCCTACTTTGTTTTTCTCTTGAGTTGGTGCTTTCATTTATCAATGAATTTTCTGTTTCTTCCTTTCTCTCTCTCTCCCTCTCTTTTTTTTTTAAACATGTGTGCATGGACAAGGAATTTTGATTAAGCTTTCACCAAAACTGAAGCTGACTTCCATTGGCGCACAAATCTTTTTGGTGTACTAGGTTTAGTGCCTAATGTTTGTGGCATTTTACTAACATTCTTGCTTTTGAGACACTCAAATTGCATTGTACTAACTTATAAGAAAAAACGTGTGGTATTGGCTTCTTTACTCCAGTACTTTAAGGCGATGGAGAAATGGCCAAGTGGTGGAGTTTTGGGGTGCTCATAATGCTGCAATTCAATCAGTCATAAAGCTTCCATCAGGCGAGCTGGTCACAGGTACCACTGCAAATAGGCACTGGAGTTTGTTTGAGTTATTATTTAGATAAGCCTTTGCCTCATTCTCCTATGTATATCGTGATTTCAAATTTTGAGTGCTTTCACCATGATTGAACCTTTATCGAGCAACATTTATGATTTATGTTATGCTTCAAACTATATGATTTTGGTGCAATGTACATATTATAGGCTTTGGAATCATTGGACTACCATTTACTTCTCGTATCATCATAGTTATTATTTGTACAAAATTGATCTCTGTTAACTGCTTTGATATTTTAATTTGTCACAAAGAAGTATGAGGAACACAATTTTCAAATATCTTAGTAAGGAATTCTTGGAATGAGTTAGTACTCTCCATCAAAGTGAGAGCGACTAGGTGAGCATTCTCACCTTTCCCATCTAATTGGTTCATGTTAGGTCATTTCGTTTCAGGGATCATCTGAGTGTAAAAGCTTCATCTTAGACATTATGGATCTTGGTAAATGGGTGTTGAACTCTGAGATTGGTGGAGCGAAATCTTCTTTGATTCTCTGTAGAGGGATATTGTAGTGAACCAAAAGTTAGAAAGAAATTTTTTTTCAAAAAAGAGAAGGGAAGAGAAGACACCATTTCCTCGACTATGTTCTTCATTGGTTCTGTTTCAGACCCTTGTGAATGCAAAGGGCTCTTTTGTGTCGTTACTTAGATTAGAATTGTTGGGAGGTAGAGGTTATTGTATTTGTTCTTTGTTCTTTGATTTTTCCTCATGAAAGTTTCATTCATATAATATAAGTTATTATACTTTGTTATTCTTATGTCTGGGCCACGAGCAAATTCAAAAGTATTTGACTTCATCTTAGGCTCTGATTATATGATTTTTGGTGTGTTCTTGTTTAGGTTCAAGTGATGCAAGTTTGAAGCTTTGGAGAGGAAAATCATGTTTGAAGACATTTTCTGGACATACAGGTCTACTCCCTCCGTCCCTCCATCTCTCCATCCCCTCGTGGGTGCATGTATATGCATTTGATTTTTAAGTTACCAGTGGTTTTTTTTTTTTTTTTTTATCTTATATCATTGGAAGTTGTGGTACCTTCACTTTCTTTTTGCATATGATACATTATATTTTTACGGTGTTCTTTTTTGAGTAGATTGATGAAATTTTATTTTATTTTTTTTGTATAAAATGTGATTAATGGCTCTGTGTCAGCCTTTTTTATTTAATCTTGAATCTGGAATTTTATTACATTTCGATCAATCCTTAACAAAGGACAAGTACAACTATATATAGGCCAAAACTGAAGCTAACAACCACATAATGGAAGGACTAACTAACTAACTACAACATTAAAGATCAGCTAAATAACTAATAGGTTGAAGGTTAGACCTACACGACTTTTGGATTTGAAGGTTAGAACTTAGAAGTTTAACTGCATGAATTTTATAAAGATTTCCACAGGATATTTAATCTGATCTTTTTTTTTTTTTTTTTTTGGGAATGAGAATCTGAAGTTTTCTTAAACTATTATATGTTTATTTTTTTAACTTGAAATTTTTAAAGCTGACTCCACACCACTCTTTGAGTTATGTTAAATTGTACTCATAGTCATGCCATTCATCATCCTTATAAATGACACAAACTGCCTTCTTATTCCATGGAAGCAGCTATTGGTAATTTATGGTAGTAAGTCACTACTTTTGTATTAGGACATGGAGCTTAATGTGATTGGTCAATTCTAGGACTAGAAGTAACTGTTTCATATCTGGAAATTTTGGCTAAGAAATCCCGATGTCGTGACCTACTTATCTTAAGTTCTATATAAAATCATGATTTCTGAAGTCTTCAAAATTCTTTAAGAGTTCTGGACAAAACTATCGAGTATAATTTGTTTTTCTGTCTGACCCATGATATATTTGTATCAATGGATATATTTCTACTATTCTTTATACTTTTGTTAGCAGGAAAACTCTATCATACAAAAAACATGTCCTTATGCGTTCTATTTACATTCTATAGATACGGTTCGAAGTTTGTCAGTGATGTCTGATCTGGGAGTGCTCTCTGCATCTCATGATGGGTAA

mRNA sequence

ATGACATCAATCAGAGGGGTTTTGACGGAAGGAGAAGTTTCTGAAAGTTTCAAGAACACCGATTTTGAGGAGAAAAGCCCCGACTTCTCTAGACTCCATAAAGTCTCATCTCCGCCTCCACCCAGTCTAATAGCATCAATGATCTCAATCAGCCTGACCCAGCTAGGAATCTCCCAATCAAAAAGACCTCTTCTAAACCCCAAATTCCTTACTTTAAGGCGATGGAGAAATGGCCAAGTGGTGGAGTTTTGGGGTGCTCATAATGCTGCAATTCAATCAGTCATAAAGCTTCCATCAGGCGAGCTGGTCACAGGTTCAAGTGATGCAAGTTTGAAGCTTTGGAGAGGAAAATCATGTTTGAAGACATTTTCTGGACATACAGATACGGTTCGAAGTTTGTCAGTGATGTCTGATCTGGGAGTGCTCTCTGCATCTCATGATGGGTAA

Coding sequence (CDS)

ATGACATCAATCAGAGGGGTTTTGACGGAAGGAGAAGTTTCTGAAAGTTTCAAGAACACCGATTTTGAGGAGAAAAGCCCCGACTTCTCTAGACTCCATAAAGTCTCATCTCCGCCTCCACCCAGTCTAATAGCATCAATGATCTCAATCAGCCTGACCCAGCTAGGAATCTCCCAATCAAAAAGACCTCTTCTAAACCCCAAATTCCTTACTTTAAGGCGATGGAGAAATGGCCAAGTGGTGGAGTTTTGGGGTGCTCATAATGCTGCAATTCAATCAGTCATAAAGCTTCCATCAGGCGAGCTGGTCACAGGTTCAAGTGATGCAAGTTTGAAGCTTTGGAGAGGAAAATCATGTTTGAAGACATTTTCTGGACATACAGATACGGTTCGAAGTTTGTCAGTGATGTCTGATCTGGGAGTGCTCTCTGCATCTCATGATGGGTAA

Protein sequence

MTSIRGVLTEGEVSESFKNTDFEEKSPDFSRLHKVSSPPPPSLIASMISISLTQLGISQSKRPLLNPKFLTLRRWRNGQVVEFWGAHNAAIQSVIKLPSGELVTGSSDASLKLWRGKSCLKTFSGHTDTVRSLSVMSDLGVLSASHDG
Homology
[Close]
BLAST of Lag0001672 vs. NCBI nr
Match: KAG7022424.1 (Phospholipase A-2-activating protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 159.1 bits (401), Expect = 3.0e-35
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 71  TLRRWRNGQVVEFWGAHNAAIQSVIKLPSGELVTGSSDASLKLWRGKSCLKTFSGHTDTV 130
           TLRRWRNGQVVEFWGAHNAAIQSVIKLPSGELVTGSSDA+LKLWRGKSCLKTFSGHTDTV
Sbjct: 129 TLRRWRNGQVVEFWGAHNAAIQSVIKLPSGELVTGSSDATLKLWRGKSCLKTFSGHTDTV 188

Query: 131 RSLSVMSDLGVLSASHDG 149
           RSLSVMSDLGVLSASHDG
Sbjct: 189 RSLSVMSDLGVLSASHDG 206

[Close]
BLAST of Lag0001672 vs. NCBI nr
Match: KAG6588627.1 (Phospholipase A-2-activating protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159.1 bits (401), Expect = 3.0e-35
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 71  TLRRWRNGQVVEFWGAHNAAIQSVIKLPSGELVTGSSDASLKLWRGKSCLKTFSGHTDTV 130
           TLRRWRNGQVVEFWGAHNAAIQSVIKLPSGELVTGSSDA+LKLWRGKSCLKTFSGHTDTV
Sbjct: 129 TLRRWRNGQVVEFWGAHNAAIQSVIKLPSGELVTGSSDATLKLWRGKSCLKTFSGHTDTV 188

Query: 131 RSLSVMSDLGVLSASHDG 149
           RSLSVMSDLGVLSASHDG
Sbjct: 189 RSLSVMSDLGVLSASHDG 206

[Close]
BLAST of Lag0001672 vs. NCBI nr
Match: XP_022931608.1 (phospholipase A-2-activating protein [Cucurbita moschata])

HSP 1 Score: 159.1 bits (401), Expect = 3.0e-35
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 71  TLRRWRNGQVVEFWGAHNAAIQSVIKLPSGELVTGSSDASLKLWRGKSCLKTFSGHTDTV 130
           TLRRWRNGQVVEFWGAHNAAIQSVIKLPSGELVTGSSDA+LKLWRGKSCLKTFSGHTDTV
Sbjct: 129 TLRRWRNGQVVEFWGAHNAAIQSVIKLPSGELVTGSSDATLKLWRGKSCLKTFSGHTDTV 188

Query: 131 RSLSVMSDLGVLSASHDG 149
           RSLSVMSDLGVLSASHDG
Sbjct: 189 RSLSVMSDLGVLSASHDG 206

[Close]
BLAST of Lag0001672 vs. NCBI nr
Match: XP_023530081.1 (phospholipase A-2-activating protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 159.1 bits (401), Expect = 3.0e-35
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 71  TLRRWRNGQVVEFWGAHNAAIQSVIKLPSGELVTGSSDASLKLWRGKSCLKTFSGHTDTV 130
           TLRRWRNGQVVEFWGAHNAAIQSVIKLPSGELVTGSSDA+LKLWRGKSCLKTFSGHTDTV
Sbjct: 129 TLRRWRNGQVVEFWGAHNAAIQSVIKLPSGELVTGSSDATLKLWRGKSCLKTFSGHTDTV 188

Query: 131 RSLSVMSDLGVLSASHDG 149
           RSLSVMSDLGVLSASHDG
Sbjct: 189 RSLSVMSDLGVLSASHDG 206

[Close]
BLAST of Lag0001672 vs. NCBI nr
Match: XP_022988694.1 (phospholipase A-2-activating protein [Cucurbita maxima])

HSP 1 Score: 159.1 bits (401), Expect = 3.0e-35
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 71  TLRRWRNGQVVEFWGAHNAAIQSVIKLPSGELVTGSSDASLKLWRGKSCLKTFSGHTDTV 130
           TLRRWRNGQVVEFWGAHNAAIQSVIKLPSGELVTGSSDA+LKLWRGKSCLKTFSGHTDTV
Sbjct: 129 TLRRWRNGQVVEFWGAHNAAIQSVIKLPSGELVTGSSDATLKLWRGKSCLKTFSGHTDTV 188

Query: 131 RSLSVMSDLGVLSASHDG 149
           RSLSVMSDLGVLSASHDG
Sbjct: 189 RSLSVMSDLGVLSASHDG 206

[Close]
BLAST of Lag0001672 vs. ExPASy Swiss-Prot
Match: P54319 (Phospholipase A-2-activating protein OS=Rattus norvegicus OX=10116 GN=Plaa PE=1 SV=3)

HSP 1 Score: 63.2 bits (152), Expect = 2.9e-09
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 0 

Query: 71  TLRRWRNGQVVEFWGAHNAAIQSVIKLP-SGELVTGSSDASLKLWRGKSCLKTFSGHTDT 130
           T + W N + +     H AA+ +V  LP  G ++TGS+D ++KLW+   C +TFSGH D 
Sbjct: 134 TAKVWLNDKCMMTLQGHTAAVWAVKILPEQGLMLTGSADKTIKLWKAGRCERTFSGHEDC 193

Query: 131 VRSLSVMSDLGVLSASHD 148
           VR L+++S+   LS ++D
Sbjct: 194 VRGLAILSETEFLSCAND 211

[Close]
BLAST of Lag0001672 vs. ExPASy Swiss-Prot
Match: Q9Y263 (Phospholipase A-2-activating protein OS=Homo sapiens OX=9606 GN=PLAA PE=1 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 3.8e-09
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 0 

Query: 71  TLRRWRNGQVVEFWGAHNAAIQSVIKLP-SGELVTGSSDASLKLWRGKSCLKTFSGHTDT 130
           T + W N + +     H AA+ +V  LP  G ++TGS+D ++KLW+   C +TFSGH D 
Sbjct: 134 TAKVWLNDKCMMTLQGHTAAVWAVKILPEQGLMLTGSADKTVKLWKAGRCERTFSGHEDC 193

Query: 131 VRSLSVMSDLGVLSASHD 148
           VR L+++S+   LS ++D
Sbjct: 194 VRGLAILSETEFLSCAND 211

[Close]
BLAST of Lag0001672 vs. ExPASy Swiss-Prot
Match: P27612 (Phospholipase A-2-activating protein OS=Mus musculus OX=10090 GN=Plaa PE=1 SV=4)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-08
Identity = 30/78 (38.46%), Postives = 48/78 (61.54%), Query Frame = 0 

Query: 71  TLRRWRNGQVVEFWGAHNAAIQSVIKLP-SGELVTGSSDASLKLWRGKSCLKTFSGHTDT 130
           T + W N + +     H AA+ +V  LP  G ++TGS+D ++KLW+   C +TF GH D 
Sbjct: 134 TAKVWLNDKCMMTLQGHTAAVWAVKILPEQGLMLTGSADKTIKLWKAGRCERTFLGHEDC 193

Query: 131 VRSLSVMSDLGVLSASHD 148
           VR L+++S+   LS ++D
Sbjct: 194 VRGLAILSETEFLSCAND 211

[Close]
BLAST of Lag0001672 vs. ExPASy Swiss-Prot
Match: Q6GM65 (Phospholipase A-2-activating protein OS=Xenopus laevis OX=8355 GN=plaa PE=2 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 2.5e-08
Identity = 31/74 (41.89%), Postives = 44/74 (59.46%), Query Frame = 0 

Query: 75  WRNGQVVEFWGAHNAAIQSVIKLP-SGELVTGSSDASLKLWRGKSCLKTFSGHTDTVRSL 134
           W N + +     H AA+ +V  LP  G ++TGS+D S+KLW+   C  TF GH D VR L
Sbjct: 144 WLNDKCMMTLQGHTAAVWAVKILPEQGLMLTGSADKSIKLWKAGRCEMTFLGHEDCVRGL 203

Query: 135 SVMSDLGVLSASHD 148
           + ++D   LS S+D
Sbjct: 204 ATINDTEFLSCSND 217

[Close]
BLAST of Lag0001672 vs. ExPASy Swiss-Prot
Match: G5EES6 (Ubiquitin fusion degradation protein 3 homolog OS=Caenorhabditis elegans OX=6239 GN=ufd-3 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 9.8e-05
Identity = 27/71 (38.03%), Postives = 40/71 (56.34%), Query Frame = 0 

Query: 78  GQVVEFWGAHNAAIQSVIKLPSGELVTGSSDASLKLWRGKSCLKTFSGHTDTVRSLSVMS 137
           G  +  W     A+ S   LP+  L + S+D ++++W G + L  F GHTD VR+L V+S
Sbjct: 163 GHTLSVW-----ALASFPDLPNTYL-SASADKTIRMWFGDTTLSVFKGHTDVVRALVVLS 222

Query: 138 DLGVLSASHDG 149
               LSA +DG
Sbjct: 223 SSHFLSAGNDG 227

The following BLAST results are available for this feature:
BLAST of Lag0001672 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7022424.13.0e-3598.72Phospholipase A-2-activating protein [Cucurbita argyrosperma subsp. argyrosperma... [more]
KAG6588627.13.0e-3598.72Phospholipase A-2-activating protein, partial [Cucurbita argyrosperma subsp. sor... [more]
XP_022931608.13.0e-3598.72phospholipase A-2-activating protein [Cucurbita moschata][more]
XP_023530081.13.0e-3598.72phospholipase A-2-activating protein [Cucurbita pepo subsp. pepo][more]
XP_022988694.13.0e-3598.72phospholipase A-2-activating protein [Cucurbita maxima][more]
BLAST of Lag0001672 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P543192.9e-0939.74Phospholipase A-2-activating protein OS=Rattus norvegicus OX=10116 GN=Plaa PE=1 ... [more]
Q9Y2633.8e-0939.74Phospholipase A-2-activating protein OS=Homo sapiens OX=9606 GN=PLAA PE=1 SV=2[more]
P276121.5e-0838.46Phospholipase A-2-activating protein OS=Mus musculus OX=10090 GN=Plaa PE=1 SV=4[more]
Q6GM652.5e-0841.89Phospholipase A-2-activating protein OS=Xenopus laevis OX=8355 GN=plaa PE=2 SV=2[more]
G5EES69.8e-0538.03Ubiquitin fusion degradation protein 3 homolog OS=Caenorhabditis elegans OX=6239... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 116..148
e-value: 11.0
score: 10.4
coord: 77..115
e-value: 0.015
score: 24.5
IPR001680WD40 repeatPFAMPF00400WD40coord: 118..148
e-value: 0.069
score: 14.1
coord: 84..114
e-value: 0.078
score: 13.9
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 84..114
score: 8.503359
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 70..148
e-value: 4.6E-16
score: 60.4
NoneNo IPR availablePANTHERPTHR19849PHOSPHOLIPASE A-2-ACTIVATING PROTEINcoord: 71..148
NoneNo IPR availablePANTHERPTHR19849:SF0PHOSPHOLIPASE A2-ACTIVATING PROTEINcoord: 71..148
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 74..148

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0001672.1Lag0001672.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005737 cytoplasm
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0005515 protein binding