Lag0001653 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001653
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Subtilisin-like protease SBT1.1
Location	chr4: 34025864 .. 34026304 (+)
RNA-Seq Expression	Lag0001653
Synteny	Lag0001653

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACATCGACCCTCTTGGACGTCCCGATATCGGGATCTCCATCACAGTTTTGCATCATCAGCTAGATGCATGGTTGCTAACGTGATCTTTGATTCCTCAGTTACTGTACTTGTGGCCCTGAAGTACTGTTCCAGGTCGAAGATGAAATTCTCCCGGGCTTTGGCATCTCAAACCCCACAGAAGGGTTTTGGTTCGGGGACCTTCACTTTGTTAAACTGGACCGCACCCCCTGTCGGAGCTTGGTTCCCCACTGCTCTCATGGTGAGGTTTATCTTGGCGCTCAGATCCGCCACTTCGGCCCTAACTAGGTTTCGTAGCTTTGCTCTCGAGGTTTTCAACCCTCATCATCAACTCTTGGATGGGCATTCCATTCACTCGGCCAGCTACCACATCAATCTTATCTGTCTTGGTCGCAATCTCTTCAAGACGAGATTCTAG

mRNA sequence

ATGACACATCGACCCTCTTGGACGTCCCGATATCGGGATCTCCATCACAGTTTTGCATCATCAGCTAGATGCATGGTTGCTAACGTGATCTTTGATTCCTCAGTTACTGTACTTGTGGCCCTGAAGTACTGTTCCAGGTCGAAGATGAAATTCTCCCGGGCTTTGGCATCTCAAACCCCACAGAAGGGTTTTGGTTCGGGGACCTTCACTTTGTTAAACTGGACCGCACCCCCTGTCGGAGCTTGGTTCCCCACTGCTCTCATGGTGAGGTTTATCTTGGCGCTCAGATCCGCCACTTCGGCCCTAACTAGGTTTCGTAGCTTTGCTCTCGAGGTTTTCAACCCTCATCATCAACTCTTGGATGGGCATTCCATTCACTCGGCCAGCTACCACATCAATCTTATCTGTCTTGGTCGCAATCTCTTCAAGACGAGATTCTAG

Coding sequence (CDS)

ATGACACATCGACCCTCTTGGACGTCCCGATATCGGGATCTCCATCACAGTTTTGCATCATCAGCTAGATGCATGGTTGCTAACGTGATCTTTGATTCCTCAGTTACTGTACTTGTGGCCCTGAAGTACTGTTCCAGGTCGAAGATGAAATTCTCCCGGGCTTTGGCATCTCAAACCCCACAGAAGGGTTTTGGTTCGGGGACCTTCACTTTGTTAAACTGGACCGCACCCCCTGTCGGAGCTTGGTTCCCCACTGCTCTCATGGTGAGGTTTATCTTGGCGCTCAGATCCGCCACTTCGGCCCTAACTAGGTTTCGTAGCTTTGCTCTCGAGGTTTTCAACCCTCATCATCAACTCTTGGATGGGCATTCCATTCACTCGGCCAGCTACCACATCAATCTTATCTGTCTTGGTCGCAATCTCTTCAAGACGAGATTCTAG

Protein sequence

MTHRPSWTSRYRDLHHSFASSARCMVANVIFDSSVTVLVALKYCSRSKMKFSRALASQTPQKGFGSGTFTLLNWTAPPVGAWFPTALMVRFILALRSATSALTRFRSFALEVFNPHHQLLDGHSIHSASYHINLICLGRNLFKTRF

Homology

[Close]

BLAST of Lag0001653 vs. NCBI nr
Match: TYK29019.1 (subtilisin-like protease SBT1.1 [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 3.6e-17
Identity = 58/101 (57.43%), Postives = 63/101 (62.38%), Query Frame = 0


Query: 6   SWTSRYRDLHHSFASSARCMVANVIFDSSVTVLVALKYCSRSKMKFSRALASQTPQKGFG 65
           S  S YRDLH +  SS RC++ANV   SSVTV VALKY SRS MKF +A AS T QKG G
Sbjct: 11  SCMSMYRDLHRNLVSSDRCIIANVTLTSSVTVFVALKYYSRSNMKFPKAFASLTQQKGLG 70

Query: 66  SGTFTLLNWTAPPVGAWFPTALMVRFILALRSATSALTRFR 107
           S TFTLL    P  GAWF  A +VRF  A  S  S L   R
Sbjct: 71  SRTFTLLMEIVPLTGAWFAIARIVRFSFAFTSMISFLMTSR 111

[Close]

BLAST of Lag0001653 vs. NCBI nr
Match: KAA0040200.1 (hypothetical protein E6C27_scaffold1164G00140 [Cucumis melo var. makuwa] >TYK25929.1 hypothetical protein E5676_scaffold190G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 8.9e-16
Identity = 49/81 (60.49%), Postives = 57/81 (70.37%), Query Frame = 0


Query: 1   MTHRPSWTSRYRDLHHSFASSARCMVANVIFDSSVTVLVALKYCSRSKMKFSRALASQTP 60
           +   PS  S Y DL H+ ASS +C+VANV   SS+TV++ALKYCSRS MKFS+A AS  P
Sbjct: 299 IAQHPSCMSTYWDLFHNLASSDKCIVANVTLSSSMTVIMALKYCSRSNMKFSKAFASLAP 358

Query: 61  QKGFGSGTFTLLNWTAPPVGA 82
           QKGFGS  FTLL    PP GA
Sbjct: 359 QKGFGSEIFTLLTKILPPAGA 379

[Close]

BLAST of Lag0001653 vs. NCBI nr
Match: TYK05651.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 8.4e-06
Identity = 34/55 (61.82%), Postives = 35/55 (63.64%), Query Frame = 0


Query: 49   MKFSRALASQTPQKGFGSGTFTLLNWTAPPVGAWFPTALMVRFILALRSATSALT 104
            + FSRA AS  PQK  GS  FTLL   APP GAWF  A MVRFIL   SA S LT
Sbjct: 1490 LPFSRAFASLAPQKVLGSEIFTLLTGIAPPAGAWFAIARMVRFILVFTSAISFLT 1544

The following BLAST results are available for this feature:

BLAST of Lag0001653 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK29019.1	3.6e-17	57.43	subtilisin-like protease SBT1.1 [Cucumis melo var. makuwa]	[more]
KAA0040200.1	8.9e-16	60.49	hypothetical protein E6C27_scaffold1164G00140 [Cucumis melo var. makuwa] >TYK259...	[more]
TYK05651.1	8.4e-06	61.82	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]

BLAST of Lag0001653 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001653.1	Lag0001653.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
molecular_function	GO:0016787	hydrolase activity