Lag0001652 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001652
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase
Location	chr4: 34025185 .. 34025577 (-)
RNA-Seq Expression	Lag0001652
Synteny	Lag0001652

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAATGACATACCCCAAGATCAGAGACAGAATCAGGCTTCTTCGAGCGGCGGGAACAAACCCACGCGATTTAGCTCTCCCAAAAGTGGGGGAGGAGACAGAACTGGAGCAGGTAATCGTAATACCTTCCAACCCAGAGGCGGGAATTTTTATCGGAATCTGAATCAACAGCCTTCTAATGAGAGGCCCCTGTCATGTTTCATTTGCAAGGGACCACATCGAGTATACGAGTGCCCGAATCGAGCAGCCTTAAAGCTTTGCAGGCCTCATTGCTTGCTAATGTTTAACCAGAGACCGAGACTGTTGAAACGGATAAGACAAGTGAAACGGATAAGACATGTCCGCGAAACGGATAAGACTGTTGATTCATGTCAGATTCTTCTTGATTAA

mRNA sequence

ATGAACAATGACATACCCCAAGATCAGAGACAGAATCAGGCTTCTTCGAGCGGCGGGAACAAACCCACGCGATTTAGCTCTCCCAAAAGTGGGGGAGGAGACAGAACTGGAGCAGGTAATCGTAATACCTTCCAACCCAGAGGCGGGAATTTTTATCGGAATCTGAATCAACAGCCTTCTAATGAGAGGCCCCTGTCATGTTTCATTTGCAAGGGACCACATCGAGTATACGAGTGCCCGAATCGAGCAGCCTTAAAGCTTTGCAGGCCTCATTGCTTGCTAATGTTTAACCAGAGACCGAGACTGTTGAAACGGATAAGACAAGTGAAACGGATAAGACATGTCCGCGAAACGGATAAGACTGTTGATTCATGTCAGATTCTTCTTGATTAA

Coding sequence (CDS)

ATGAACAATGACATACCCCAAGATCAGAGACAGAATCAGGCTTCTTCGAGCGGCGGGAACAAACCCACGCGATTTAGCTCTCCCAAAAGTGGGGGAGGAGACAGAACTGGAGCAGGTAATCGTAATACCTTCCAACCCAGAGGCGGGAATTTTTATCGGAATCTGAATCAACAGCCTTCTAATGAGAGGCCCCTGTCATGTTTCATTTGCAAGGGACCACATCGAGTATACGAGTGCCCGAATCGAGCAGCCTTAAAGCTTTGCAGGCCTCATTGCTTGCTAATGTTTAACCAGAGACCGAGACTGTTGAAACGGATAAGACAAGTGAAACGGATAAGACATGTCCGCGAAACGGATAAGACTGTTGATTCATGTCAGATTCTTCTTGATTAA

Protein sequence

MNNDIPQDQRQNQASSSGGNKPTRFSSPKSGGGDRTGAGNRNTFQPRGGNFYRNLNQQPSNERPLSCFICKGPHRVYECPNRAALKLCRPHCLLMFNQRPRLLKRIRQVKRIRHVRETDKTVDSCQILLD

Homology

[Close]

BLAST of Lag0001652 vs. NCBI nr
Match: XP_022155185.1 (uncharacterized protein LOC111022320 [Momordica charantia])

HSP 1 Score: 99.8 bits (247), Expect = 1.9e-17
Identity = 51/87 (58.62%), Postives = 64/87 (73.56%), Query Frame = 0


Query: 1   MNNDIPQDQRQNQASSSGGNKPTRFSSPKSGGGDRTGAGNRNTFQPRGGNFYRNLNQQPS 60
           +++D  Q+QR+ QASSS G++P R  SPK+GG D+ G G+R  FQ RGGN +R  N   +
Sbjct: 283 LSSDTSQEQRKTQASSSSGHRPARSGSPKNGGADKNGGGDRRPFQQRGGNTWRGPNPPNN 342

Query: 61  NERP-LSCFICKGPHRVYECPNRAALK 87
           N R   SCFICKGPHRVYECPNRAAL+
Sbjct: 343 NNRTGPSCFICKGPHRVYECPNRAALR 369

[Close]

BLAST of Lag0001652 vs. NCBI nr
Match: KAA0032849.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 3.1e-12
Identity = 44/84 (52.38%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 1   MNNDIPQDQRQNQASSSGGNKPTRFSSPKSGGGDRTGAGNRNTFQPRGGNFYRNLNQQPS 60
           ++ND  QD R++ +SSSGG++  R SSPK+ GGDR  +G+R ++Q   GN +R  N Q  
Sbjct: 325 LSND-SQDTRRHPSSSSGGSRNNRPSSPKTTGGDRRFSGDRRSYQSNTGNSWRGSNNQNL 384

Query: 61  NERPLSCFICKGPHRVYECPNRAA 85
           + RPLSCFICKGPH   ECPN+ A
Sbjct: 385 SNRPLSCFICKGPHMARECPNKTA 407

[Close]

BLAST of Lag0001652 vs. NCBI nr
Match: KAA0040442.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 4.1e-12
Identity = 44/84 (52.38%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 1   MNNDIPQDQRQNQASSSGGNKPTRFSSPKSGGGDRTGAGNRNTFQPRGGNFYRNLNQQPS 60
           ++ND PQD R++ +SSSGG++  R SSPK+ GGDR  +G+R + Q   GN +R  + Q  
Sbjct: 295 LSND-PQDTRRHPSSSSGGSRNNRPSSPKTTGGDRRFSGDRRSHQSNTGNSWRGSSNQNL 354

Query: 61  NERPLSCFICKGPHRVYECPNRAA 85
           + RPLSCFICKGPH   ECPN+ A
Sbjct: 355 SNRPLSCFICKGPHMARECPNKTA 377

[Close]

BLAST of Lag0001652 vs. NCBI nr
Match: KAA0047432.1 (uncharacterized protein E6C27_scaffold498G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-11
Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 1   MNNDIPQDQRQNQASSSGGNKPTRFSSPKSGGGDRTGAGNRNTFQPRGGNFYRNLNQQPS 60
           ++ND  QD R++ +SSSGG++  R SSPK+ GGDR   G+R ++Q   GN +R  + Q  
Sbjct: 213 LSND-SQDTRRHPSSSSGGSRNNRPSSPKTTGGDRRSNGDRRSYQSNTGNSWRGSSNQNL 272

Query: 61  NERPLSCFICKGPHRVYECPNRAA 85
           + RPLSCFICKGPH   ECPN+ A
Sbjct: 273 SNRPLSCFICKGPHMARECPNKTA 295

[Close]

BLAST of Lag0001652 vs. NCBI nr
Match: KAA0035532.1 (uncharacterized protein E6C27_scaffold285G001980 [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 2.0e-11
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 7   QDQRQNQASSSGGNKPTRFSSPKSGGGDRTGAGNRNTFQPRGGNFYRNLNQQPSNERPLS 66
           QD R++ +SSSGG++  R SSPK+ GGDR   G+R + Q   GN +R  + Q  + RPLS
Sbjct: 330 QDTRRHPSSSSGGSRNNRLSSPKTTGGDRRFNGDRRSHQSNHGNSWRGSSNQNLSNRPLS 389

Query: 67  CFICKGPHRVYECPNRAA 85
           CFICKGPH   ECPN+ A
Sbjct: 390 CFICKGPHMARECPNKTA 407

The following BLAST results are available for this feature:

BLAST of Lag0001652 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155185.1	1.9e-17	58.62	uncharacterized protein LOC111022320 [Momordica charantia]	[more]
KAA0032849.1	3.1e-12	52.38	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0040442.1	4.1e-12	52.38	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0047432.1	1.2e-11	51.19	uncharacterized protein E6C27_scaffold498G00230 [Cucumis melo var. makuwa]	[more]
KAA0035532.1	2.0e-11	52.56	uncharacterized protein E6C27_scaffold285G001980 [Cucumis melo var. makuwa]	[more]

BLAST of Lag0001652 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001652.1	Lag0001652.1	mRNA