Lag0001644 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001644
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	cyclin-B1-2-like
Location	chr4: 33974995 .. 33975653 (+)
RNA-Seq Expression	Lag0001644
Synteny	Lag0001644

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCTTCGAAGACCATACCCCATGAAATCGGTGGGATCCAGAATGATGCCCTTCGATTTGGCCTCCAAGGCGTTAAGAGCGACCTCGTCAGATCTCATCCTGTCGAATCCCTCTATGAAACTGTAATTTCCTCTCTCGCTCTAGCTATCGCCCTTTTGTATAATGTAGAAAAGTGAACTAGAACTAAATTTCTTCAATCTAAGTTGGCCTATTTAATCTCTGTATGGATTTCCCCTGTTTAGTAGTTGCAGTTGGACTAGATTGTTATTGGAAATAGAATCTAGGTTCGACGGAGCTGATGAACTCACTATTTGCCTAAGTTGCTCGGATTAGGAACTTGATGTTCTATTTGCTGGCTAGTGATTAATTTTCTTTATTATACCCTTATTATGAATTTTTTTAGAGTCTCATCCTTTAAAATTAATTTTGTAAATAGTGGTGGCATCTGCCGACTTTCAATGTCTTCAAATTCATCTCTTCATACTGAAATGTGCATGACAGTGTGATTTCCTCACATGCGATTCGACATTTATATGAGAAAAACATTCTAAGAATTCCAAATTTCTTGGTAAAGGACAGTGGTGCCAATAGGTTATGCTCTCAATTAGATTGCCATGAAGAGGACATAAGCATTGAAAAGCCTCTTTTGTCTTGA

mRNA sequence

ATGGAGTCTTCGAAGACCATACCCCATGAAATCGGTGGGATCCAGAATGATGCCCTTCGATTTGGCCTCCAAGGCGTTAAGAGCGACCTCGTCAGATCTCATCCTGTCGAATCCCTCTATGAAACTGACAGTGGTGCCAATAGGTTATGCTCTCAATTAGATTGCCATGAAGAGGACATAAGCATTGAAAAGCCTCTTTTGTCTTGA

Coding sequence (CDS)

ATGGAGTCTTCGAAGACCATACCCCATGAAATCGGTGGGATCCAGAATGATGCCCTTCGATTTGGCCTCCAAGGCGTTAAGAGCGACCTCGTCAGATCTCATCCTGTCGAATCCCTCTATGAAACTGACAGTGGTGCCAATAGGTTATGCTCTCAATTAGATTGCCATGAAGAGGACATAAGCATTGAAAAGCCTCTTTTGTCTTGA

Protein sequence

MESSKTIPHEIGGIQNDALRFGLQGVKSDLVRSHPVESLYETDSGANRLCSQLDCHEEDISIEKPLLS

Homology

[Close]

BLAST of Lag0001644 vs. NCBI nr
Match: XP_038889455.1 (cyclin-B1-2-like [Benincasa hispida])

HSP 1 Score: 84.7 bits (208), Expect = 3.3e-13
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 1  MESSKTIPHEIGGIQNDALRFGLQGVKSDLVRSHPVESLYET 43
          MESSK IPHEIGGIQNDALRFGLQGVKSDLV SHPVESLYET
Sbjct: 1  MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESLYET 42

[Close]

BLAST of Lag0001644 vs. NCBI nr
Match: XP_004141496.1 (cyclin-B1-2 [Cucumis sativus] >KGN52569.1 hypothetical protein Csa_009184 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 3.3e-13
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 1  MESSKTIPHEIGGIQNDALRFGLQGVKSDLVRSHPVESLYET 43
          MESSK IPHEIGGIQNDALRFGLQGVKSDLV SHPVESLYET
Sbjct: 1  MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESLYET 42

[Close]

BLAST of Lag0001644 vs. NCBI nr
Match: KAG6578507.1 (Cyclin-B1-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016072.1 Cyclin-B1-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 84.0 bits (206), Expect = 5.6e-13
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 1  MESSKTIPHEIGGIQNDALRFGLQGVKSDLVRSHPVESLYET 43
          MESSK IPHEIGGIQNDALRFGLQGVKSDLV SHPVES+YET
Sbjct: 1  MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESIYET 42

[Close]

BLAST of Lag0001644 vs. NCBI nr
Match: XP_022939098.1 (cyclin-B1-2-like [Cucurbita moschata] >XP_023550448.1 cyclin-B1-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 84.0 bits (206), Expect = 5.6e-13
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 1  MESSKTIPHEIGGIQNDALRFGLQGVKSDLVRSHPVESLYET 43
          MESSK IPHEIGGIQNDALRFGLQGVKSDLV SHPVES+YET
Sbjct: 1  MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESIYET 42

[Close]

BLAST of Lag0001644 vs. NCBI nr
Match: XP_022993234.1 (cyclin-B1-2-like [Cucurbita maxima])

HSP 1 Score: 84.0 bits (206), Expect = 5.6e-13
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 1  MESSKTIPHEIGGIQNDALRFGLQGVKSDLVRSHPVESLYET 43
          MESSK IPHEIGGIQNDALRFGLQGVKSDLV SHPVES+YET
Sbjct: 1  MESSKAIPHEIGGIQNDALRFGLQGVKSDLVGSHPVESIYET 42

The following BLAST results are available for this feature:

BLAST of Lag0001644 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889455.1	3.3e-13	95.24	cyclin-B1-2-like [Benincasa hispida]	[more]
XP_004141496.1	3.3e-13	95.24	cyclin-B1-2 [Cucumis sativus] >KGN52569.1 hypothetical protein Csa_009184 [Cucum...	[more]
KAG6578507.1	5.6e-13	92.86	Cyclin-B1-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016072.1 Cycli...	[more]
XP_022939098.1	5.6e-13	92.86	cyclin-B1-2-like [Cucurbita moschata] >XP_023550448.1 cyclin-B1-2-like [Cucurbit...	[more]
XP_022993234.1	5.6e-13	92.86	cyclin-B1-2-like [Cucurbita maxima]	[more]

BLAST of Lag0001644 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008012	Proteasome maturation factor Ump1	PANTHER	PTHR12828	PROTEASOME MATURATION PROTEIN UMP1	coord: 1..44
None	No IPR available	PANTHER	PTHR12828:SF8	BNAA07G25120D PROTEIN	coord: 1..44

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001644.1	Lag0001644.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043248	proteasome assembly
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus