Lag0001628 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001628
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr4: 33787327 .. 33793012 (+)
RNA-Seq Expression	Lag0001628
Synteny	Lag0001628

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCATACCTTCTCGAGCTCCCTCACGTTTTGGCTTCGCTCTCGAGCTTGTTTACACGCCGGCATTTGTCTTCCTTCAGAGATGGTTTCACATTGAGGTGAGGTCTTCCTTTTTCTTTTATCTTCTTCTTCTTATTTCTTTTTATTTTACCTAACTTTTCTAACATTAGACATTTGTATTATGAAACTGTACATGCTTCAAATACAATGTGTATGCAAATAAATTCTGAGAAGTCTCTGTATTTGCGTGATGGAGAGGAGCGCAAAACATTTTGTAAGGTTTTCAAATTCTCTTTTTTATGATTTTTGAGATCCTCAATTTATGATGAAATTGTAGCATCAATATGATTTTTTTTCTCAAGTATTTCTTTTATGTACTCCTATTTTTTCTCCATAAATCGTGATTTTAATTTAGTATAAGATTTATTAATTTAAAGTTTCATTTTTTAATTTTCAACACCCATCCAATATTTTGAGAAAGCTCCTATCTCATTTAATTTTTTTTTTTAAAAAAATTAAGTTATCCCATGAATAATTAAGCAATCCGTTAGTTAAAACATATATCTTCTCTCTTTTATCTATTTTCTCTTGGGTTGGAATCTATTAGATTAATCAAATTTTAGGTTTTCATTTCAATTTTCGAGTAGATTTTTTAATCAACAAATCATCTTACATCAGATCGATTTCTTGGTCTTCACTTTTTTCCAACGTTGCCTCATATTTGTATTCTTTTTTTTAATTCTTATTCATTCTTTTCCTTGCAAAATTAGATCCCTATGTTATGAGACGAGAAATACTTCAAATACAGTGTATATGAAGTAAATTCTGAGAAATCCCTATATTTGCATGATTTTTCTTTCTCAATATACTATATTTCTTTGATGTACCCTTATTTTTCCTCCATAAATCGTGATTTTAATTCAGTATAAGATTTTTTTAATTAAATTTTTTTTTTTCAAATTATTCGGTTTAAGATATATTAGTATGAGTCTTATCTTTTTTTTTATTTTGAAATTCATTGATTTAATTTGGCTTAAATTAATTTCTAAATCGTATATTCTCTTCCTATTTTATAGTGTATTTTAATTTAATTAGTATTTTAGATTTAGATTTTGATTAAGGGCATTTTTATCTGAACTTAAAATAACATTTGGTCATTTTTCGAATGAAAAATTTGAATGGTCATTTTTCAAAACGACCCATTAAAAATGACCATTTATTTAGTTGCCCCATTTTTTAATATATATAAATCAATAAGCTCATTCAATTGAGAATTCATCGATCGTTACTCGTCACATGTTATCTCAACCTTCGAAATTAAGTCATATGAGAGACATGCACCAAAATTTATTATAAAAAATACAATTTTTTTTCGTTACTCTATTTTTTTTTCTCTCTAATAACAAAGTATAGATTTTTAAAAACTAATTCACAAGTACATAATCAACTTTTAATTTAGGTCTCACATTTTTAAAATATATATATATATATATATATATATATATATATATATATATATATATATATTTGTTTAGTTTTAAATCTAAAAAAAAATAAATATAACAGGAATTTTGTTTACTTTAGTACACACATTTTTAAAAAGTATTGTTTGATTTTTCTTTTACTTTTAAACTTTTATTTATTTGGTATAGAATAACAAATAAGAAAAAAATTTGTCATCTAAGAAAAAAATAAAAAAGATAGAAATAAAGGAAAATATTCAGCTAATTGTGATAAAAGAAAAATAAAAAGAAGAAATATGACAAATAAATCAAACTGTTGTTATTTTTATTTTTTAAAAAAATTAAAAGGAAAAGAAAAAAAAAAATCTGTACTAAATTTTTAAAAAGATAAAAAATTTAAATTAAAAGAAAAAACAAAGTTTCAAGATAAAAAAAATGTGTGACCTAAAATAAAAAGTAGATTATAACAATTTTATAATTCAAGATAAAAATATATATATATAAAGAAAATGCGTATTTTATACATTAAATTAAATTGTTAGTATTTACCTATATAAATTTCAAATTTCAAAGAAAAAATAAAAAAAAGAAAAAATCTATACTATATATAAAAGGGGCTAAGTGAGGAGAATTTTTATTTTCCTCTTTTGCCCTTACTTTTTAGATAAATTCCTATTTTACCCTTTGCTGATGGGACACGACTATTCAAGTGTAAGTGTCCATTGAGTCCAATAGGTACAATTGATGTCTGTGGGATGTGACTGTTCATGTAGAGATGGTTACATAGTGAATTGGTGCATCAGTTCGTGTATAGGTGTGAGCCATGTATAAAAAGAAAATATATGTATATAAAATTGTCAAAATGTCAAACTATATGAAAAATTGTCCAACAGGTACAATTGATGTCGACAGGATGCGTCTGTTCCGGAGATGGTTACACATTAAATTGATGCATTCATCCATGTATAGGTGTGATCTACCGTATAAAAAGAAAATATATAATTGAAAAAATTCAATTTATAGGAAAATTTCTTCTTTTATACGAGAACTCAAAACTTTCAAAAAAAAAAAAAAGGAAAATTACAAGTTTGTGTTATACGTGAGGGAAACACTATTGACTGTGTCACAATAAAACCTTGAGAATTCATAAAATTTTGGTCCATGAAGAAGTAGTATTGTTATCTATCCTTTTTTATTTTTCGAAAGTCATTGTTGATGGAGAAATTTTGACCAATCACGAATTGCCACGTCATTACATAAAATTAATGACGAAATTAAAGTTAATTAAATTTGGGACCCATTATAAATTGACATGTGTCCCAAATTTAATTTGAAAACAAAGTTGGCCAATTATAAATTTATAGAGCCAAATTTCTATTTGATCAATTAATTAAAATTAAATTATTTCAATCAAATTAATTAATTTGACCAATTAATTAAAAATAATAATTATTTGGATCAAATTTGGGTCTTTTAAATGTCTGGGTCATATGGTTTTGGGTCAAATATAAACCAAACCCAAGACTAAATGGTTCAGCCCAAGACCAATAAAACCCAAGCCCAAGTTGTTAGGCCCAAAAGTTACCAGGGCCCATCCTGCGAGAACTCTATAAATAGGGGGATTCAGATTTGGAGACAGAGTCAGAGAACTCAGAGTCCAGAGCATTCTGCCAGAGTCCAGAGTCGGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCTGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAGGAAGATCAACAAGCCAACAAGCCGATCCAGAGATCATCACGCCAACAGGCCGATCATCAAGAAGATCAACAAGCCCAATAGGTCGATCCAGGAGATCATCAACCTAACAGGCCGATCATCCAAGAAGATCAACAAGTCCAATAGGTCGATCCAGGAGATCATCAACCTAACAGACCGATCATCCAAGAAGATCAACAAGCCAATAAGCCGATCCAAGAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAACCTAGCAAGTGATCATCTAAGAAGCCCAACAAACCGGCCCAAGAAGAGCAACAAGCTAGAGGCCAAAGTTTATATATTTAAGAGAGAGAATCAGAGGATTAAAGTTAGAGATTGTACACCCACACGCATACAACATTAATACAATATATTATTTATTCCACGTGTCTCCATCCCCGAAGTTACGTGTGAACAAATTGGCATGCCCGTGGGACATCTCTACCTCTCATCTCTCTCTCTTATCTCAAAACAAGTGTAAACATGTCGTTCAAGACTTCTTCAATGGTCGCTGTCATGAACAAGTCTTACATGGGTTCTACTGCCCATTGTTGCTTAGTGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGCTGGAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTTTGTTAAGTATAACCCTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAGCACATCAACACTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATGAGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGTCGTAAAAAATCATGACAAAGGAAAGACTATAGTGCAAGATGATCAGCCACAGTGTTCTGCTTCGGTCGCTTCACTATCCATCCAACAGCTCCAAGATATGATCACAAACTGTATCAGAGCTCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTATTCCAAACCTTATACTAAGAGGATTGATAATTGAGAACGCCAATCGGGTATCAGCCACCAAATTTCAACATTTGATGGAAAGGGCAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGGTACTCGAGGGGACCTGCTAGTCAAACAGTTCGTTCGAACACTTAAAGGAAATGCTTTTGACTGGTACACTGATCTAGAACCTGAGTCAGTAGACAGTTGGGAGGAACTCGAAAGAGAGTTTTTGAATCGCTTCTACACACTAGACGAACCGTTAGCATGTTCGAGCTCACAACACTAAACAACGAAAAGGTGAACTCGTTGTTAACTATATAAATCGCTGGAGAGCTATGAGTCTAGATTGCAAAGATCGCCTCACTGAACTCTCTTCCGTTGAGATGTGCATTCAAGGCATGCACTGGGAACTCCTCTACATCCTTAAAGGTATAAAGTCTCGCACTTTGAGGAACTAGCAACTCGCGCCCACGATATGGAGCTAAGTATTGCTAGTCGAGAAAACCAAGACCATTCTCTCCCTAACATGAGAAAAGAAGGAAGAACGACGAAGAGACTATAGAAGAATCCATGGTTGTCAACACAACCCTTCCCAAGTCGTCTTCAAAGAAAACGACAAACAAATGGAGCGCATCACTTAACTTTAAAGGAAAGACAGAAGAAAATCTGTCCTTTCCCTGACGACGACATCCCTGATATGTTGGAACAACTATTGGAAGCGCAACTGATAGAGCTTCCTAAGTGTAAACGACCAGAAGAGATGGAAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGTTTTGGTCATCCAGTGGAAAGATGTTTCGTCCTAAAGGACTTAATTCTAAAGCTAGCTATGGAAGGAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGGAAAGAGCAAACATCAAATAAAGAAGAATCCTAAGAAACTTCAACCCAAGAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCATTCTCCAAAACTTTCCACAAAAAGAAAAAGAGAACCTTGCGACTTCCTACTGCATCGACGTAG

mRNA sequence

ATGGAAGCATACCTTCTCGAGCTCCCTCACGTTTTGGCTTCGCTCTCGAGCTTGTTTACACGCCGGCATTTGTCTTCCTTCAGAGATGGTTTCACATTGAGGCCGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCTGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAGGAAGATCAACAAGCCAACAAGCCGATCCAGAGATCATCACGCCAACAGGCCGATCATCAAGAAGATCAACAAGCCCAATAGGTCGATCCAGGAGATCATCAACCTAACAGGCCGATCATCCAAGAAGATCAACAAGTCCAATAGGTCGATCCAGGAGATCATCAACCTAACAGACCGATCATCCAAGAAGATCAACAAGCCAATAAGCCGATCCAAGAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAACCTAGCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGCTGGAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTTTGTTAAAGCTCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTATTCCAAACCTTATACTAAGAGGATTGATAATTGAGAACGCCAATCGGGTATCAGCCACCAAATTTCAACATTTGATGGAAAGGGCAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGATTGCAAAGATCGCCTCACTGAACTCTCTTCCGTTGAGATGTGCATTCAAGGCATGCACTGGGAACTCCTCTACATCCTTAAAGAAGAAAATCTGTCCTTTCCCTGACGACGACATCCCTGATATGTTGGAACAACTATTGGAAGCGCAACTGATAGAGCTTCCTAAGTGTAAACGACCAGAAGAGATGGAAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGTTTTGGTCATCCAGTGGAAAGATGTTTCGTCCTAAAGGACTTAATTCTAAAGCTAGCTATGGAAGGAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGGAAAGAGCAAACATCAAATAAAGAAGAATCCTAAGAAACTTCAACCCAAGAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCATTCTCCAAAACTTTCCACAAAAAGAAAAAGAGAACCTTGCGACTTCCTACTGCATCGACGTAG

Coding sequence (CDS)

ATGGAAGCATACCTTCTCGAGCTCCCTCACGTTTTGGCTTCGCTCTCGAGCTTGTTTACACGCCGGCATTTGTCTTCCTTCAGAGATGGTTTCACATTGAGGCCGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCTGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAGGAAGATCAACAAGCCAACAAGCCGATCCAGAGATCATCACGCCAACAGGCCGATCATCAAGAAGATCAACAAGCCCAATAGGTCGATCCAGGAGATCATCAACCTAACAGGCCGATCATCCAAGAAGATCAACAAGTCCAATAGGTCGATCCAGGAGATCATCAACCTAACAGACCGATCATCCAAGAAGATCAACAAGCCAATAAGCCGATCCAAGAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAACCTAGCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGCTGGAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTTTGTTAAAGCTCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTATTCCAAACCTTATACTAAGAGGATTGATAATTGAGAACGCCAATCGGGTATCAGCCACCAAATTTCAACATTTGATGGAAAGGGCAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGATTGCAAAGATCGCCTCACTGAACTCTCTTCCGTTGAGATGTGCATTCAAGGCATGCACTGGGAACTCCTCTACATCCTTAAAGAAGAAAATCTGTCCTTTCCCTGACGACGACATCCCTGATATGTTGGAACAACTATTGGAAGCGCAACTGATAGAGCTTCCTAAGTGTAAACGACCAGAAGAGATGGAAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGTTTTGGTCATCCAGTGGAAAGATGTTTCGTCCTAAAGGACTTAATTCTAAAGCTAGCTATGGAAGGAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGGAAAGAGCAAACATCAAATAAAGAAGAATCCTAAGAAACTTCAACCCAAGAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCATTCTCCAAAACTTTCCACAAAAAGAAAAAGAGAACCTTGCGACTTCCTACTGCATCGACGTAG

Protein sequence

MEAYLLELPHVLASLSSLFTRRHLSSFRDGFTLRPIQEINKPTDRSRRSTSQQADHPRDQQANRPIKKINKSAGRSSKRINKLTSRSNRSSSQQADPRDQQANRPIKKINKSAGDHPRDQQANRPIKKINKSAGRSSRKINKPTSRSRDHHANRPIIKKINKPNRSIQEIINLTGRSSKKINKSNRSIQEIINLTDRSSKKINKPISRSKRSSSQQADPRDHQPSNELTLQEDKASIAGGQETTLQGAYTNDKFLLKLSTVDLLKIPSCIPNLILRGLIIENANRVSATKFQHLMERAILNNILPTSLRHARTLIAKIASLNSLPLRCAFKACTGNSSTSLKKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWSSSGKMFRPKGLNSKASYGRKIELDLDEVAQSNLATIKGKSKHQIKKNPKKLQPKRKRSKKFSQPQQLVMLNKSFSKTFHKKKKRTLRLPTAST

Homology

[Close]

BLAST of Lag0001628 vs. NCBI nr
Match: KAA0042128.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 1.2e-11
Identity = 47/89 (52.81%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 342 KKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWSSSGK-MFR 401
           ++KI PFPD D+PDML+QLLE QLI+LP+CKRP EM +   P IA+II   +   K +F 
Sbjct: 362 QEKIYPFPDSDLPDMLDQLLEKQLIQLPECKRPTEMGRVNDPIIANIIGSSAIPLKNVFV 421

Query: 402 PKGLNSKASYGRKIELDLDEVAQSNLATI 430
            K L  K +  +KIEL+LD+VAQ+N A +
Sbjct: 422 LKELILKLALDKKIELELDDVAQTNHAAV 450

[Close]

BLAST of Lag0001628 vs. NCBI nr
Match: TYK18071.1 (uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 1.2e-11
Identity = 47/89 (52.81%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 342 KKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWSSSGK-MFR 401
           ++KI PFPD D+PDML+QLLE QLI+LP+CKRP EM +   P IA+II   +   K +F 
Sbjct: 362 QEKIYPFPDSDLPDMLDQLLEKQLIQLPECKRPTEMGRVNDPIIANIIGSSAIPLKNVFV 421

Query: 402 PKGLNSKASYGRKIELDLDEVAQSNLATI 430
            K L  K +  +KIEL+LD+VAQ+N A +
Sbjct: 422 LKELILKLALDKKIELELDDVAQTNHAAV 450

[Close]

BLAST of Lag0001628 vs. NCBI nr
Match: TYK18885.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 7.6e-11
Identity = 45/85 (52.94%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 342 KKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWSSS-GKMFR 401
           +KK+ PFPD D+ DMLEQL+E QLI+LPKCKRPE+  K   P+        S S  K F 
Sbjct: 401 QKKVYPFPDSDVADMLEQLIEKQLIQLPKCKRPEQAGKVDDPNYCKYHRVISHSVEKCFV 460

Query: 402 PKGLNSKASYGRKIELDLDEVAQSN 426
            K L  K ++  KIELD+DEVAQ+N
Sbjct: 461 LKELILKLAHENKIELDIDEVAQTN 485

[Close]

BLAST of Lag0001628 vs. NCBI nr
Match: KAA0053731.1 (uncharacterized protein E6C27_scaffold135G001080 [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 1.3e-10
Identity = 45/89 (50.56%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 342 KKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWSSS-GKMFR 401
           ++KI PFPD D+PDML+QLLE QLI+LP+CKRP EM K   P+        S    K F 
Sbjct: 296 QEKIYPFPDSDLPDMLDQLLEKQLIQLPECKRPAEMGKVNDPNYCKYHRVISHPVEKCFV 355

Query: 402 PKGLNSKASYGRKIELDLDEVAQSNLATI 430
            K L  K +  +KIEL+LD+VAQ+N A +
Sbjct: 356 LKELILKLALDKKIELELDDVAQTNHAAV 384

[Close]

BLAST of Lag0001628 vs. NCBI nr
Match: KAA0054202.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK15060.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 2.2e-10
Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 0


Query: 342 KKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWSSS---GKM 401
           ++KI PFPD D+PDML+QLLE QLI+LP+CKRP EM +   P+       W  S    K 
Sbjct: 380 QEKIYPFPDSDVPDMLDQLLEKQLIQLPECKRPAEMGRVNDPNYCKY--HWVISHPVEKC 439

Query: 402 FRPKGLNSKASYGRKIELDLDEVAQSNLATI 430
           F  K L  K +  +KIEL+LD+VAQ+N A +
Sbjct: 440 FVLKELILKLALDKKIELELDDVAQTNHAAV 468

[Close]

BLAST of Lag0001628 vs. ExPASy TrEMBL
Match: A0A5A7TH26 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G006120 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.7e-12
Identity = 47/89 (52.81%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 342 KKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWSSSGK-MFR 401
           ++KI PFPD D+PDML+QLLE QLI+LP+CKRP EM +   P IA+II   +   K +F 
Sbjct: 362 QEKIYPFPDSDLPDMLDQLLEKQLIQLPECKRPTEMGRVNDPIIANIIGSSAIPLKNVFV 421

Query: 402 PKGLNSKASYGRKIELDLDEVAQSNLATI 430
            K L  K +  +KIEL+LD+VAQ+N A +
Sbjct: 422 LKELILKLALDKKIELELDDVAQTNHAAV 450

[Close]

BLAST of Lag0001628 vs. ExPASy TrEMBL
Match: A0A5D3D1E5 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G004020 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.7e-12
Identity = 47/89 (52.81%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 342 KKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWSSSGK-MFR 401
           ++KI PFPD D+PDML+QLLE QLI+LP+CKRP EM +   P IA+II   +   K +F 
Sbjct: 362 QEKIYPFPDSDLPDMLDQLLEKQLIQLPECKRPTEMGRVNDPIIANIIGSSAIPLKNVFV 421

Query: 402 PKGLNSKASYGRKIELDLDEVAQSNLATI 430
            K L  K +  +KIEL+LD+VAQ+N A +
Sbjct: 422 LKELILKLALDKKIELELDDVAQTNHAAV 450

[Close]

BLAST of Lag0001628 vs. ExPASy TrEMBL
Match: A0A5D3D5T0 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00930 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.7e-11
Identity = 45/85 (52.94%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 342 KKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWSSS-GKMFR 401
           +KK+ PFPD D+ DMLEQL+E QLI+LPKCKRPE+  K   P+        S S  K F 
Sbjct: 401 QKKVYPFPDSDVADMLEQLIEKQLIQLPKCKRPEQAGKVDDPNYCKYHRVISHSVEKCFV 460

Query: 402 PKGLNSKASYGRKIELDLDEVAQSN 426
            K L  K ++  KIELD+DEVAQ+N
Sbjct: 461 LKELILKLAHENKIELDIDEVAQTN 485

[Close]

BLAST of Lag0001628 vs. ExPASy TrEMBL
Match: A0A5A7UJR2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G001080 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.3e-11
Identity = 45/89 (50.56%), Postives = 58/89 (65.17%), Query Frame = 0


Query: 342 KKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWSSS-GKMFR 401
           ++KI PFPD D+PDML+QLLE QLI+LP+CKRP EM K   P+        S    K F 
Sbjct: 296 QEKIYPFPDSDLPDMLDQLLEKQLIQLPECKRPAEMGKVNDPNYCKYHRVISHPVEKCFV 355

Query: 402 PKGLNSKASYGRKIELDLDEVAQSNLATI 430
            K L  K +  +KIEL+LD+VAQ+N A +
Sbjct: 356 LKELILKLALDKKIELELDDVAQTNHAAV 384

[Close]

BLAST of Lag0001628 vs. ExPASy TrEMBL
Match: A0A5A7TVR2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold157G00650 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.1e-10
Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 342 KKKICPFPDDDIPDMLEQLLEAQLIELPKCKRPEEMEKSMIPSIASIIEFWS-SSGKMFR 401
           ++K+ PFPD D+PDML+QLLE QLI+LP+CKRP EM +   P+        S  + K F 
Sbjct: 292 QEKVYPFPDSDLPDMLDQLLEKQLIQLPECKRPAEMGRVNDPNYCKYHRVISHPAEKCFV 351

Query: 402 PKGLNSKASYGRKIELDLDEVAQSNLATI 430
            K L  K +  +KIEL+LD+VAQ+N A +
Sbjct: 352 LKELILKLALDKKIELELDDVAQTNHAAV 380

The following BLAST results are available for this feature:

BLAST of Lag0001628 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042128.1	1.2e-11	52.81	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK18071.1	1.2e-11	52.81	uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa]	[more]
TYK18885.1	7.6e-11	52.94	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0053731.1	1.3e-10	50.56	uncharacterized protein E6C27_scaffold135G001080 [Cucumis melo var. makuwa]	[more]
KAA0054202.1	2.2e-10	49.45	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK15060.1 ty3-gyp...	[more]

BLAST of Lag0001628 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0001628 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TH26	5.7e-12	52.81	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3D1E5	5.7e-12	52.81	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00402...	[more]
A0A5D3D5T0	3.7e-11	52.94	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UJR2	6.3e-11	50.56	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]
A0A5A7TVR2	1.1e-10	48.31	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Lag0001628 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 430..486
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 192..229
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..156
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..229
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 432..454
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001628.1	Lag0001628.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process