Lag0001600 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001600
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr4: 33378011 .. 33378424 (+)
RNA-Seq Expression	Lag0001600
Synteny	Lag0001600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTTCGAAAACTCTCAAGAGCTGTGGGCAACAATACAAGACCTATTTGGTCTTCAATCCCGTGCTGAGGAAGACTACCTCAGACAAGTTTTTCAACAGACTCGCAAAGAAGGTATGAAAATGGCTGAATACTTGCGTTTAATGAAAACTCACGCTGATAGTCTTGGTCAAGCAGGAAGTCCAGTATCGGTAAGAACACTGGTATCTCAAGTTCTTTTAGGACTTGACGAGGAGTATAATGCAGTGGTAGCAATGATTCAAGGACCAGCAATCATTACATGGTCGGAGATGCATGTTGAGCTCTTGGTGTTTGAGAAGAGACTTGAGTTACAAAACACCCGGAAATCAGCTGTTAATTTCAGTCACAACACCTCAGTAAACATGGCTAACAGTAGTAACAATGGAGGTTAG

mRNA sequence

ATGGGCTTCGAAAACTCTCAAGAGCTGTGGGCAACAATACAAGACCTATTTGGTCTTCAATCCCGTGCTGAGGAAGACTACCTCAGACAAGTTTTTCAACAGACTCGCAAAGAAGGTATGAAAATGGCTGAATACTTGCGTTTAATGAAAACTCACGCTGATAGTCTTGGTCAAGCAGGAAGTCCAGTATCGGTAAGAACACTGGTATCTCAAGTTCTTTTAGGACTTGACGAGGAGTATAATGCAGTGGTAGCAATGATTCAAGGACCAGCAATCATTACATGGTCGGAGATGCATGTTGAGCTCTTGGTGTTTGAGAAGAGACTTGAGTTACAAAACACCCGGAAATCAGCTGTTAATTTCAGTCACAACACCTCAGTAAACATGGCTAACAGTAGTAACAATGGAGGTTAG

Coding sequence (CDS)

ATGGGCTTCGAAAACTCTCAAGAGCTGTGGGCAACAATACAAGACCTATTTGGTCTTCAATCCCGTGCTGAGGAAGACTACCTCAGACAAGTTTTTCAACAGACTCGCAAAGAAGGTATGAAAATGGCTGAATACTTGCGTTTAATGAAAACTCACGCTGATAGTCTTGGTCAAGCAGGAAGTCCAGTATCGGTAAGAACACTGGTATCTCAAGTTCTTTTAGGACTTGACGAGGAGTATAATGCAGTGGTAGCAATGATTCAAGGACCAGCAATCATTACATGGTCGGAGATGCATGTTGAGCTCTTGGTGTTTGAGAAGAGACTTGAGTTACAAAACACCCGGAAATCAGCTGTTAATTTCAGTCACAACACCTCAGTAAACATGGCTAACAGTAGTAACAATGGAGGTTAG

Protein sequence

MGFENSQELWATIQDLFGLQSRAEEDYLRQVFQQTRKEGMKMAEYLRLMKTHADSLGQAGSPVSVRTLVSQVLLGLDEEYNAVVAMIQGPAIITWSEMHVELLVFEKRLELQNTRKSAVNFSHNTSVNMANSSNNGG

Homology

[Close]

BLAST of Lag0001600 vs. NCBI nr
Match: XP_038896600.1 (uncharacterized protein LOC120084860 [Benincasa hispida])

HSP 1 Score: 159.5 bits (402), Expect = 2.1e-35
Identity = 87/138 (63.04%), Postives = 104/138 (75.36%), Query Frame = 0


Query: 1   MGFENSQELWATIQDLFGLQSRAEEDYLRQVFQQTRKEGMKMAEYLRLMKTHADSLGQAG 60
           MG+E ++ELW  IQ+LFG+QSRAEEDYLRQ+FQQTRK G KM+ YL+LMK H+D+L Q  
Sbjct: 10  MGYETAKELWQAIQELFGVQSRAEEDYLRQLFQQTRKGGQKMSGYLKLMKLHSDNLAQTS 69

Query: 61  SPVSVRTLVSQVLLGLDEEYNAVVAMIQGPAIITWSEMHVELLVFEKRLELQNTRKSAVN 120
           SPVS RTL+SQVLLGLDEEYN VV  IQG   I+W +M  ELL +EKRLE QN+ K    
Sbjct: 70  SPVSTRTLISQVLLGLDEEYNLVVVGIQGKPGISWLDMQSELLTYEKRLEHQNSIKIHST 129

Query: 121 FSHNTSVNMANSSN-NGG 138
           F+    VN+A S N NGG
Sbjct: 130 FAQQPFVNVAFSMNLNGG 147

[Close]

BLAST of Lag0001600 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 156.8 bits (395), Expect = 1.4e-34
Identity = 81/130 (62.31%), Postives = 99/130 (76.15%), Query Frame = 0


Query: 1   MGFENSQELWATIQDLFGLQSRAEEDYLRQVFQQTRKEGMKMAEYLRLMKTHADSLGQAG 60
           MGF  S+ELW  +Q+LFG+QSRAE DYL+QVFQQT K  ++M EYL+LMK+HAD+L  AG
Sbjct: 127 MGFSTSRELWTAVQELFGVQSRAEVDYLKQVFQQTCKGSLQMIEYLKLMKSHADNLALAG 186

Query: 61  SPVSVRTLVSQVLLGLDEEYNAVVAMIQGPAIITWSEMHVELLVFEKRLELQNTRKSA-- 120
           S VSVR LVSQVL GLDEEYN +V  +QG   ++WSEMH ELL +EKRLE QN+ KS   
Sbjct: 187 SSVSVRDLVSQVLTGLDEEYNPIVVAVQGKVNLSWSEMHAELLTYEKRLEYQNSLKSGIP 246

Query: 121 VNFSHNTSVN 129
           +N +   SVN
Sbjct: 247 INQTQTPSVN 256

[Close]

BLAST of Lag0001600 vs. NCBI nr
Match: XP_038905164.1 (uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida])

HSP 1 Score: 151.4 bits (381), Expect = 5.8e-33
Identity = 80/134 (59.70%), Postives = 102/134 (76.12%), Query Frame = 0


Query: 1   MGFENSQELWATIQDLFGLQSRAEEDYLRQVFQQTRKEGMKMAEYLRLMKTHADSLGQAG 60
           MG E +++LW +I  LFG+QSR EEDYLR VFQ TRK  +KM EYL+ MK + D+L QAG
Sbjct: 73  MGCECAKDLWTSIPQLFGVQSRVEEDYLRHVFQTTRKGNLKMEEYLQTMKMNTDNLEQAG 132

Query: 61  SPVSVRTLVSQVLLGLDEEYNAVVAMIQGPAIITWSEMHVELLVFEKRLELQNTRKSAVN 120
           SP+  RTLVSQVLLGLDEEYNA+VAMIQG   ++W +M  ELL++E+RLE Q+ +K+ V 
Sbjct: 133 SPMPPRTLVSQVLLGLDEEYNAIVAMIQGRVDMSWLDMQSELLLYERRLEHQSNQKTTVG 192

Query: 121 FSH--NTSVNMANS 133
           F+   N SVNM N+
Sbjct: 193 FNQISNASVNMTNT 206

[Close]

BLAST of Lag0001600 vs. NCBI nr
Match: XP_038905161.1 (uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida])

HSP 1 Score: 151.4 bits (381), Expect = 5.8e-33
Identity = 80/134 (59.70%), Postives = 102/134 (76.12%), Query Frame = 0


Query: 1   MGFENSQELWATIQDLFGLQSRAEEDYLRQVFQQTRKEGMKMAEYLRLMKTHADSLGQAG 60
           MG E +++LW +I  LFG+QSR EEDYLR VFQ TRK  +KM EYL+ MK + D+L QAG
Sbjct: 73  MGCECAKDLWTSIPQLFGVQSRVEEDYLRHVFQTTRKGNLKMEEYLQTMKMNTDNLEQAG 132

Query: 61  SPVSVRTLVSQVLLGLDEEYNAVVAMIQGPAIITWSEMHVELLVFEKRLELQNTRKSAVN 120
           SP+  RTLVSQVLLGLDEEYNA+VAMIQG   ++W +M  ELL++E+RLE Q+ +K+ V 
Sbjct: 133 SPMPPRTLVSQVLLGLDEEYNAIVAMIQGRVDMSWLDMQSELLLYERRLEHQSNQKTTVG 192

Query: 121 FSH--NTSVNMANS 133
           F+   N SVNM N+
Sbjct: 193 FNQISNASVNMTNT 206

[Close]

BLAST of Lag0001600 vs. NCBI nr
Match: XP_038902487.1 (uncharacterized protein LOC120089143 [Benincasa hispida])

HSP 1 Score: 149.1 bits (375), Expect = 2.9e-32
Identity = 77/116 (66.38%), Postives = 89/116 (76.72%), Query Frame = 0


Query: 1   MGFENSQELWATIQDLFGLQSRAEEDYLRQVFQQTRKEGMKMAEYLRLMKTHADSLGQAG 60
           MG+EN + LWA IQ+LFGLQSRA EDYLRQVFQQT K  MKM EYLR+MKTH+D+LG  G
Sbjct: 160 MGYENYKYLWAAIQELFGLQSRAGEDYLRQVFQQTCKGAMKMPEYLRVMKTHSDNLGLTG 219

Query: 61  SPVSVRTLVSQVLLGLDEEYNAVVAMIQGPAIITWSEMHVELLVFEKRLELQNTRK 117
           SPV  R LVSQVLLGLDEE+N  VA IQG + I+W+ M  ELL FEKR    N ++
Sbjct: 220 SPVPTRALVSQVLLGLDEEFNPFVATIQGRSEISWTNMQTELLAFEKRQTNNNNQR 275

The following BLAST results are available for this feature:

BLAST of Lag0001600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896600.1	2.1e-35	63.04	uncharacterized protein LOC120084860 [Benincasa hispida]	[more]
XP_022151683.1	1.4e-34	62.31	uncharacterized protein LOC111019598 [Momordica charantia]	[more]
XP_038905164.1	5.8e-33	59.70	uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida]	[more]
XP_038905161.1	5.8e-33	59.70	uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida]	[more]
XP_038902487.1	2.9e-32	66.38	uncharacterized protein LOC120089143 [Benincasa hispida]	[more]

BLAST of Lag0001600 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 4..109 e-value: 9.4E-9 score: 35.2
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 5..132
None	No IPR available	PANTHER	PTHR34222:SF26	SUBFAMILY NOT NAMED	coord: 5..132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001600.1	Lag0001600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding