Lag0001556 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001556
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	coiled-coil domain-containing protein 12-like
Location	chr4: 32803883 .. 32807587 (-)
RNA-Seq Expression	Lag0001556
Synteny	Lag0001556

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTATAACTCTGGTATTGTCATAGTATCCTTATCGTCATAGTATCCTTATCGAGAACAATCGCGAGTGATATTAAGTTCTTTTTGTATCATATATTTTAAATACAATAGGCAATGGCTACTGAAGAAGACTCTGTCGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAGAGCTCTAAGAGCAGCTCAGGAATTGTTAAATGCTCCAGATGAGAAGACTTCTGGAGGAGAGGATAAAGAGAACGGTGCTACTGCAGATACTGAAGAAGAAATGTGAGTGTATATCTTTTTCTTCCACCAAAGACAGACACTGCTCTATAAGTTGTTTTTTCTTTGATTTTTTTGTTTCGATTTCTGGGTAAGTTGAATACCGTTGAGATTAGATTTGATTAAATTTTGAATGTTATTCTTCTATCCATGGATCACTTCTAAGCACATTTGTAACATTAAGGTAGGTTCAATTTGACCTCTATAACTTTAATATCCTCTCTCAACTCTATTCGACTCTATTCTCATTTAGTTGTGCTTTTAAAGATATTGCCTATGATATCATCTCCAAATGTAGAATTGTAAACTATAATTATACTCATATACGACCTATAGATTCGTAGCTTCATGAATAAACGAACGTGAATAGATTAGAAAGATATCAATCGAGAAAGTTCACGCTCAATAAGCCATTAAATTAATATTCCATTTATAAATACTTAATTGCTCGTATCTCCTGGAAACTGAAACTCCACTAAATTAATATTCCATTGAAAGTAGAACTATGTCGGAGATGAAGAGGAAAAAAGAATAGATTTCATGATACTCCTGTCCTGAATGTTTGTCTCCTTCTCTTAGGAGTGATGATGATGTCCTTCTTCCTCTGCCTCTAGCTACCTTCTTTTATCTTTGTAGCTGACCTTTTCCTTCCTACTTAACTATTGCTCTCTCTCATTTTCTCTTCCTCTTCCTTTAGCCATCCCTTTTATCTTTGTATCTATCGTCTGACTTTTCCCCTTTTTTCTTATGGTTTTTTGTGCATGTTGAGATTACACGATGCCATAGTGAGCTAAGTTCTCTAGAATCTAGCTTGGAGCATGTTACAGACGGCTGCTGTATGCTGTGGCTAGTGAACTTTGTTTATGATGTATTAAAAGTGCCTGCATTGTCGTGGCAGTTCAAACAAAAGTTTTCTTCCTTTCCTTTGTTAGTTGCATCTATCTGTTTACAGAATGGAATCATAAGGCCGCAAAAAATCCAAATAGTGCAGAAGACTAGCCAAATATTTGATAAAATAGTATTCGAAACTAACCTGTAAAGTCTTTGTAAACATGATGCTTATGAAACATGCCCATGTATGTGTCCTCTCACTAATGAGATGTTTCTTTTGTTTTCTTTCTTTGCTCTCTTTTTCTTTTTCCTTTCTAGTTCTTAATAATATTTGGCTTGAAGAGTTTGGGATGAAGATGAATGGATGGCAATGATGGTGACATATAACTTAGCTGCTATTTATTTTTGGGGATATGTTTTCATGTTCAACTTCAAAAGTGTTTCAATAGATTTTGTCCCTTGCAATGGGAACATTGTGAATATAATCACATTCTGTTGTTTATTTGAATATATGTTTTGTTTGTTGTTATTGTCAACTCATTTGAAAAGTTGATGTACACATTTACTATGCAGCATGTTAAGTAGCTCTTCCCTCATTTAATAAGTGCAATATACGGACATGAGCTCATTAGTTTTGTTATTGGATTAGTTCTTGATTCTCTAATAAATTGTCCTTTTGCAGTAATCTTAGTATGAAATTTCGGAACTATGTTCCACATGACAAGGAGCTTCAGGAGGGTAAGCTTGCCCCACCTGTATTGCCGAAGTTCGACGACCCTGTTGCTACTGAACCTCCACAATTAAAAGAGGTAGTTTTGTCAGTTACTCTATGATATGTTTTTAAACTGGCCTGTGCTCGTATTTTGTGGATCTTTTTCTATTAATTATATTCTATTGAAAAAATTTTAGGACCCATTTGTAAATATTGCTCCTAAGAAACCAAACTGGGACCTAAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGGTAAGTAGTAATATTGAATTAAGGTTTACGTGAACTTGTTGATAAATCATTATTTTATTTTAGTTCTTTTACTTCTTGCTTCATTTGTTAGTGTAACAAAGTATTTAGCGAATTGAATTGGTTTGCTCTGAGAAAATATCTATGTAGTCAATTAGCATAAACATAAAATCGTTTTTGTTTACTGGTCCTGTTTTGGGGTCAAATGTATTCTTTTTCCATGCACCACGACATTTATGACCAACTAGGAGATTTTGATTATCATTTAGCAAGCAATATTGTTCAAGTCAACATGCCTGCTGAAATATGTTAGGCCACCAATAAAAAACGTATATGTTAGGAAAAATAAATGGGGTGGAAAGAAGATAATTGTTGGAGAAAACAACAATTAATAGGGCTGGCTGTTAGTATTCTGTTCTTGTCTATTTTTGGGCTGTATTAATAGGAGCATAATCCTATGTCTAGTATTTTGAAGTCTTGGGTATGTTGAGAGTCATCTGGTCATAATAACTCAGATAAGGAATAGTCTATTTAATGGAAGTCTAGGAGAAGTCCAGGGTATCAAGAAGTTGTTGTAAGACCTTAGTCTTGGAGAGAAATCAACCCTCTCGAATTGGTTGATAATCAGTAAAGCAATATTCTATCCTATCCTCTGTTTTTCTTTTATTTTGTAAGGGAAACCTTACAAAATATTGACTGCAACTTTTATCTCTAACCTTTTTCAATCTACCAAGTCCCTGCATACACCGATTAAAAACCATTTCATGAAATTAATAATGTAGTTGGAGTTGATTTGATTCTGTATGGATAATTGAGATTGATTTGGTCATCAGTTGTGGATTTAGGATTTAACATTCTTCAATCTTGAAATTAGAACTTGCTGGGCATTTAAAATTTGGGGGATTTCTAGGTATCAAGGCTTGTGGAGCTTGAAGGAGAATGGAGCCAGATTAAACCATAACCCTGCATACACCGATTAAAAACCATTTCATGAAATTAATAATGTAGTTGGAGTTGATTTGATTCTGTATGGATAATTGAGATTGATTTGGTCATCAGTTGTGGATTTAGGATTTAACATTCTTCAATCTTGAAATTAGAACTTGCTGGGCATTTAAAATTTGGGGGATTTCTAGGTATCAAGGCTTGTGGAGCTTGAAGGAGAATGGAGCCAGATTAAACCATAACCCTCACTGATAAACTCGTGAAGATGTTGAAAGTAATAGAAATGTTCATGACATCTTTTCTTCCCTTTGGAGATTTATTTATTTTTAAAGGACATCACGAATACAAATATAAGGTCAGGATTTGAACTCATAATCCGGATCTTTAAGAGGAGGTAGACATGTCCTATAACCCACTGAGTTTTATTCAAGTTGGTGTTATTAGCTAGCCAGTGTTCATTGGCAGTTACAAGAGTGATTAATTATGTGAAACTCTGAAATTACAGAATGTTTGCACATTCAGAGCACCTTGCTTACTTGCCCTGAACTTTATTCTTTGTTCAATTTTTTGTAGAGGAACAGGAAAAGCAAAAGCAGTCAGCTGAAGGAGACGATGATCAAAATGGTACAGAGGAATAG

mRNA sequence

ATGCCTATAACTCTGGCAATGGCTACTGAAGAAGACTCTGTCGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAGAGCTCTAAGAGCAGCTCAGGAATTGTTAAATGCTCCAGATGAGAAGACTTCTGGAGGAGAGGATAAAGAGAACGGTGCTACTGCAGATACTGAAGAAGAAATTAATCTTAGTATGAAATTTCGGAACTATGTTCCACATGACAAGGAGCTTCAGGAGGGTAAGCTTGCCCCACCTGTATTGCCGAAGTTCGACGACCCTGTTGCTACTGAACCTCCACAATTAAAAGAGGACCCATTTGTAAATATTGCTCCTAAGAAACCAAACTGGGACCTAAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGAGGAACAGGAAAAGCAAAAGCAGTCAGCTGAAGGAGACGATGATCAAAATGGTACAGAGGAATAG

Coding sequence (CDS)

ATGCCTATAACTCTGGCAATGGCTACTGAAGAAGACTCTGTCGAACAAGTTGCTGCAGCACGTAAAGAGAGATTGAGAGCTCTAAGAGCAGCTCAGGAATTGTTAAATGCTCCAGATGAGAAGACTTCTGGAGGAGAGGATAAAGAGAACGGTGCTACTGCAGATACTGAAGAAGAAATTAATCTTAGTATGAAATTTCGGAACTATGTTCCACATGACAAGGAGCTTCAGGAGGGTAAGCTTGCCCCACCTGTATTGCCGAAGTTCGACGACCCTGTTGCTACTGAACCTCCACAATTAAAAGAGGACCCATTTGTAAATATTGCTCCTAAGAAACCAAACTGGGACCTAAGAAGGGATGTGCAGAAGAAGCTTGATAAGCTTGAAAGACGTACTCAGAAAGCATTATATAAGCTTATGGAGGAACAGGAAAAGCAAAAGCAGTCAGCTGAAGGAGACGATGATCAAAATGGTACAGAGGAATAG

Protein sequence

MPITLAMATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTEEEINLSMKFRNYVPHDKELQEGKLAPPVLPKFDDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTEE

Homology

[Close]

BLAST of Lag0001556 vs. NCBI nr
Match: XP_022955111.1 (coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022955112.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022955113.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022955114.1 coiled-coil domain-containing protein 12-like [Cucurbita moschata])

HSP 1 Score: 274.2 bits (700), Expect = 6.9e-70
Identity = 147/154 (95.45%), Postives = 150/154 (97.40%), Query Frame = 0


Query: 7   MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTEEEINLSMKF 66
           MATEEDSVEQVAAAR+ERLRALRAAQELLNAPDEKTSGGED+ENGA ADT EEINL MKF
Sbjct: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADT-EEINLGMKF 60

Query: 67  RNYVPHDKELQEGKLAPPVLPKFDDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLD 126
           RNYVPHDKELQEGKLAPPVLPKF+DPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLD
Sbjct: 61  RNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLD 120

Query: 127 KLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE 161
           KLERRTQKALYKLMEEQEKQKQSAEGDDDQN TE
Sbjct: 121 KLERRTQKALYKLMEEQEKQKQSAEGDDDQNDTE 153

[Close]

BLAST of Lag0001556 vs. NCBI nr
Match: KAG6572999.1 (Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 274.2 bits (700), Expect = 6.9e-70
Identity = 147/154 (95.45%), Postives = 150/154 (97.40%), Query Frame = 0


Query: 7   MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTEEEINLSMKF 66
           MATEEDSVEQVAAAR+ERLRALRAAQELLNAPDEKTSGGED+ENGA ADT EEINL MKF
Sbjct: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDQENGAAADT-EEINLGMKF 60

Query: 67  RNYVPHDKELQEGKLAPPVLPKFDDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLD 126
           RNYVPHDKELQEGKLAPPVLPKF+DPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLD
Sbjct: 61  RNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLD 120

Query: 127 KLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE 161
           KLERRTQKALYKLMEEQEKQKQSAEGDDDQN TE
Sbjct: 121 KLERRTQKALYKLMEEQEKQKQSAEGDDDQNDTE 153

[Close]

BLAST of Lag0001556 vs. NCBI nr
Match: XP_023542240.1 (coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023542241.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023542242.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_023542243.1 coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 273.9 bits (699), Expect = 9.1e-70
Identity = 147/154 (95.45%), Postives = 149/154 (96.75%), Query Frame = 0


Query: 7   MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTEEEINLSMKF 66
           MATEEDSVEQVAAAR+ERLRALRAAQELLNAPDEKTSGGEDKENGA ADT EE NL MKF
Sbjct: 1   MATEEDSVEQVAAARQERLRALRAAQELLNAPDEKTSGGEDKENGAAADT-EETNLGMKF 60

Query: 67  RNYVPHDKELQEGKLAPPVLPKFDDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLD 126
           RNYVPHDKELQEGKLAPPVLPKF+DPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLD
Sbjct: 61  RNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLD 120

Query: 127 KLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE 161
           KLERRTQKALYKLMEEQEKQKQSAEGDDDQN TE
Sbjct: 121 KLERRTQKALYKLMEEQEKQKQSAEGDDDQNDTE 153

[Close]

BLAST of Lag0001556 vs. NCBI nr
Match: XP_022994277.1 (coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima] >XP_022994278.1 coiled-coil domain-containing protein 12-like isoform X2 [Cucurbita maxima] >XP_022994279.1 coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima] >XP_022994280.1 coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima] >XP_022994281.1 coiled-coil domain-containing protein 12-like isoform X2 [Cucurbita maxima] >XP_022994282.1 coiled-coil domain-containing protein 12-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 271.9 bits (694), Expect = 3.4e-69
Identity = 145/154 (94.16%), Postives = 148/154 (96.10%), Query Frame = 0


Query: 7   MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTEEEINLSMKF 66
           MATEEDSVEQVAAAR+ERLRALR AQELLNAPDEKTSGGED+ENG  ADT EE NL MKF
Sbjct: 1   MATEEDSVEQVAAARQERLRALRTAQELLNAPDEKTSGGEDQENGTAADT-EETNLGMKF 60

Query: 67  RNYVPHDKELQEGKLAPPVLPKFDDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLD 126
           RNYVPHDKELQEGKLAPPVLPKF+DPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLD
Sbjct: 61  RNYVPHDKELQEGKLAPPVLPKFEDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLD 120

Query: 127 KLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE 161
           KLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE
Sbjct: 121 KLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE 153

[Close]

BLAST of Lag0001556 vs. NCBI nr
Match: XP_038894163.1 (coiled-coil domain-containing protein 12 [Benincasa hispida])

HSP 1 Score: 266.9 bits (681), Expect = 1.1e-67
Identity = 144/154 (93.51%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 7   MATEEDSVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTEEEINLSMKF 66
           MATEEDSVEQVAAARKERLRALRAAQELLNA DEK SGGEDKENGATAD  EE NL+MKF
Sbjct: 1   MATEEDSVEQVAAARKERLRALRAAQELLNASDEKNSGGEDKENGATADA-EETNLNMKF 60

Query: 67  RNYVPHDKELQEGKLAPPVLPKFDDPVATEPPQLKEDPFVNIAPKKPNWDLRRDVQKKLD 126
           RNYVPHDKELQEGKLAPPVLPKF+DPV TEP QLKEDPFVNIAPKKPNWDLRRDVQKKLD
Sbjct: 61  RNYVPHDKELQEGKLAPPVLPKFEDPVTTEPAQLKEDPFVNIAPKKPNWDLRRDVQKKLD 120

Query: 127 KLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTE 161
           KLERRTQKALYKLMEEQEKQKQSAEGDDDQNG E
Sbjct: 121 KLERRTQKALYKLMEEQEKQKQSAEGDDDQNGAE 153

[Close]

BLAST of Lag0001556 vs. ExPASy Swiss-Prot
Match: Q8R344 (Coiled-coil domain-containing protein 12 OS=Mus musculus OX=10090 GN=Ccdc12 PE=1 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 6.9e-12
Identity = 57/150 (38.00%), Postives = 89/150 (59.33%), Query Frame = 0


Query: 14  VEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTE-----EEI--NLSMKF 73
           +E+ A  RKERL+ALR          EKT G +D+E+G     +     EE+  +  ++ 
Sbjct: 11  LEEEALRRKERLKALR----------EKT-GRKDREDGEPQTKQLREEGEEVGKHRGLRL 70

Query: 74  RNYVPHDKELQEGKL--APPVL----PKFDDPVATEPPQLKEDPFVNIAPKKPNWDLRRD 133
           RNYVP D++L+  ++  A PV      K     A   P ++E    N+AP+KP+WDL+RD
Sbjct: 71  RNYVPEDEDLKRRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKRD 130

Query: 134 VQKKLDKLERRTQKALYKLMEEQEKQKQSA 151
           V KKL+KLE+RTQ+A+ +L+ E+ K ++ +
Sbjct: 131 VAKKLEKLEKRTQRAIAELIRERLKGQEDS 149

[Close]

BLAST of Lag0001556 vs. ExPASy Swiss-Prot
Match: Q8WUD4 (Coiled-coil domain-containing protein 12 OS=Homo sapiens OX=9606 GN=CCDC12 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.6e-11
Identity = 59/161 (36.65%), Postives = 92/161 (57.14%), Query Frame = 0


Query: 14  VEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENG-------ATADTEEEINLSMKF 73
           +E+ A  RKERL+ALR          EKT G +DKE+G          + E E +  ++ 
Sbjct: 11  LEEEALRRKERLKALR----------EKT-GRKDKEDGEPKTKHLREEEEEGEKHRELRL 70

Query: 74  RNYVPHDKELQEGKL--APPVL----PKFDDPVATEPPQLKEDPFVNIAPKKPNWDLRRD 133
           RNYVP D++L++ ++  A PV      K     A   P ++E    N+AP+KP+WDL+RD
Sbjct: 71  RNYVPEDEDLKKRRVPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPDWDLKRD 130

Query: 134 VQKKLDKLERRTQKALYKLMEEQEKQKQSAEGDDDQNGTEE 162
           V KKL+KL++RTQ+A+ +L+ E+ K ++ +        TE+
Sbjct: 131 VAKKLEKLKKRTQRAIAELIRERLKGQEDSLASAVDAATEQ 160

[Close]

BLAST of Lag0001556 vs. ExPASy Swiss-Prot
Match: Q9UU80 (Pre-mRNA-splicing factor cwf18 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cwf18 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 6.9e-04
Identity = 37/137 (27.01%), Postives = 67/137 (48.91%), Query Frame = 0


Query: 13  SVEQVAAARKERLRALRAAQELLNAPDEKTSGGEDKENGATADTEEEINLSMKFRNYVPH 72
           S+++VA +RK+RL  LR  ++L N                T D++E     ++ RNY P 
Sbjct: 3   SLDEVAESRKQRLAELRKIKQLEN---------------KTRDSQEVQKNVIEHRNYDPE 62

Query: 73  DKELQEGKLAPPVLPKFDDPVATEPPQ-------------LKEDPFVNIAPKKPNWDLRR 132
            +  + G + PP + +  + ++ E  +             ++E   V + PKKP WDL R
Sbjct: 63  VQAPKMGFVEPPNMIESVEALSKEIEEKTKRKIEEQSSVPVEELDLVTLRPKKPTWDLER 122

Query: 133 DVQKKLDKLERRTQKAL 137
           D+++++  LE + Q A+
Sbjct: 123 DLKERMRSLETQNQNAI 124

The following BLAST results are available for this feature:

BLAST of Lag0001556 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955111.1	6.9e-70	95.45	coiled-coil domain-containing protein 12-like [Cucurbita moschata] >XP_022955112...	[more]
KAG6572999.1	6.9e-70	95.45	Coiled-coil domain-containing protein 12, partial [Cucurbita argyrosperma subsp....	[more]
XP_023542240.1	9.1e-70	95.45	coiled-coil domain-containing protein 12-like [Cucurbita pepo subsp. pepo] >XP_0...	[more]
XP_022994277.1	3.4e-69	94.16	coiled-coil domain-containing protein 12-like isoform X1 [Cucurbita maxima] >XP_...	[more]
XP_038894163.1	1.1e-67	93.51	coiled-coil domain-containing protein 12 [Benincasa hispida]	[more]

BLAST of Lag0001556 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8R344	6.9e-12	38.00	Coiled-coil domain-containing protein 12 OS=Mus musculus OX=10090 GN=Ccdc12 PE=1...	[more]
Q8WUD4	2.6e-11	36.65	Coiled-coil domain-containing protein 12 OS=Homo sapiens OX=9606 GN=CCDC12 PE=1 ...	[more]
Q9UU80	6.9e-04	27.01	Pre-mRNA-splicing factor cwf18 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 118..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..161
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..111
IPR013169	mRNA splicing factor Cwf18-like	PFAM	PF08315	cwf18	coord: 14..142 e-value: 3.0E-34 score: 118.6
IPR013169	mRNA splicing factor Cwf18-like	PANTHER	PTHR31551	PRE-MRNA-SPLICING FACTOR CWF18	coord: 7..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001556.1	Lag0001556.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0071014	post-mRNA release spliceosomal complex
cellular_component	GO:0005684	U2-type spliceosomal complex