Lag0001555 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0001555
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionU6 snRNA-associated Sm-like protein LSm8
Locationchr4: 32794196 .. 32798279 (+)
RNA-Seq ExpressionLag0001555
SyntenyLag0001555
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCACGGGAAAAGGGGAAGGAGGAAGAAGGAAGAAAGAAGTGAGAGGAGAGAGAAATGGGAAAAGAGGAAAGCAATTAAAAATGATTTTTTAATTAAAATAATAAATAATAATAATAAATAACAAAAAATATTATTTTTTAATAAAAAAATAAATGACACATTAAGTTTCCGTGATTAGTTGACGGAAAAGCTCTAATATGTATCTAAATGCAAATCTCAGGATATTTTTGTTGAATTTAAAAACTCAAGAACTAAAGTGTAATTTAACCCAAACCTGAAAGAGTGTATTTTTCCCATATGAATTTTACAAATCTCACGACACTTGGTCAATTGAAATAAAAATAAATAAAAGAAAGAGAAAACCTAAACCAAACCCTTTCATCTTCCTCTCACTCTCACGTGCTCTACCTTCTTCTTCTTCACGCCTGCTTATTCTCCCCTCTCTGCAGCTCAGTGTCGCCGCCGTCGTCGCCGCTTCTTTCCGATTCAGTGCCGCGTTCGTCTTTCTTCCGTTCGTGCAGCCGCAGCCTCCCTCCCAGCGGATTGCACTGACTTTTTTTCTTGTTGTTGTTAAAGGTATTCTCCCAATCTCCATCTATGTCTCTCTCCCTTGAAAAACTCAAATTAGAACTTGTCTAATGAAATAATGGTAGAGTTCTTTTGATTATTTTATTGATAACATTAGCAGAATATCAACGAACAAAAAATCAGTTGCGGCGAATTGTACTTTTCGACTATTGTGTGCTTACCCTCTGCCTTTTGATTTCTTGCTTTTGTCTATCAATTGAGGCCTTGATCATCTGTATATCTCTTTGGTCTCGAGGGACCGTAAATTTTTCAGCATCTCCCTTCTTGTTATATATCAAGAATCAGTCGAAGTGATGTATCGTTTTTCCAAATTTTCTTTAATGCCTAGCTTGTAGGAGTTGATTTGATTGTCAATCAACCTCAACCATATTTATATTTGTAGATTAGAGTTGGAAGAAGACACTGAGTCTTTTAAGAAAATTGGAATTCTCTCCATCTGATTAACCAATCGCCAATGTTACTTTTTACTGGAAATAAGAGTTGTCTATGCTTTCTTCTTCTGCGACTAATTTGTGCTTGTAATGGTTTTTCATTTTCTTTTATCGTCTTGGACAGAATCTTGCAGCAACTGACAATATAGAATAGCTCGTAGCTTATTGTGAGGGTCTTCAATATGGCAAGTGGACCTGGACTTGAATCTCTGGTTGATCGTAAGTAATCTCATTAATAATCCCTCAAATTTCTCGTTTTTATGTGTATTTAATTCATTCAGTGTGAAAATGCGGTAATTAATATTGAACTTCTGAGGCAGGCAGTTGAATAGATTGTCTTTTTTTTTTTGGTTATGAATTGTTTTGGGCGATACAAAGCGCCTCTTTGTATTATTTTCGGTTTGATTAAATGAAACCTAGAATATCATACATTTAGTTAGAGAACAATTTGAAATGTGGATTGGAGGAGGAAACCACTCTGAATTGGCCTAGTGGTCAAGAAAGGTTTTGTAAATAATAAAGAATTTAGAAGAATTGGTTCAAGCTTCAGCCATGGTGACCACCTCCCTAGAATTTAATATCGTATGGATTAGCTTGGCAACCAAATGTAGTAAGGTTAGATAATTGTCCGTACAAAAAGGGGGGGGGGGGGATGTTAGAACAATGATATGTATACAATATCAGCCTAGTAGAGATCATACGAAAATATACTTAAGAAACAAGATTAAATGTGAATGGACTGAGTAAAACTTGTTTATGATCTCTTAACTGCCCTGGAGTTGAAGCATGACTTTGCTTCTTAAACTTGCAATGCTACGATACTCTCCTACTTGCAACCTTCTTCTTTAAAGTTCTGTAAATGTAATTTTTTTGAGAAATTGGTGTATTTAAAGTTCATGTTGAATTCAATTTTAGTTGACTTACTTTTCCTTTATTGTATTGTTCTTACTCTTCTCACCTGCTTGCACTTAAATCTTCCTTTTAATTTTTTCTAGAAACAATATCAGTAATCACGAATGACGGCCGCAATATCGTGGTATGTTTAGAAGTATCATCCAGTTGACTGGTATTTTGTCCACCCAATTTGTGTTTATATTAACGATACTTTATTCAGGGAGTGTTGAAAGGATTTGACCAGGCTACAAATATTATCCTTGATGAATCTCATGAACGCGTTTACTCAACCAAGGTTTGTACATTCACCACGTTTAGCTTTGATGTAATTTTCTATTTCTATTGCTCTTTCGTCGGTTGTCAGTTTAGACAGAGAATTCTTTCTATATGTAGAAAGAATATATATAGTTCAGTTTCTGCTCTCTGTGGCCTCCCTTTCTTATTTTATTTCCATCTATTTTGTCAATGTGTTTGAACTTGCTATTGGAACAATTTCTCTGGCATTTGCTATTCTGAATTGAATGTTTAATCTGCTTCTCCTTTTCGGGGATTGATATTTTCTCACTCCTTACAAACTTGTTTAATAGTATAGCAGAATAAGAGCTTTGATCCTTCTTTTTCTACTCACTAGTTCTTAGCAAACCGTATTACACCCGAGCTGAATCATTTCTAGACTTTCGATTGACCACATTTTGAAGTATACATGAAAATTAAATTTTGTAATTTAAATTCCATGAATGTAGTCTGATCTAGAGTAAGGGTCCGTTTGGAATACATTTTAATTTAAATATTTTTCAAGAATGCATTTTTGAAAAACATTTTGTATAAAAATTGTTTAGAATTTAAACACTCATATGTTTGGTTACATTTCCTCATAAGTGTTTTTATACACAAGCTATTGTATACTTAAAACTCTTTTAAAGAAGTTGATTTCAAGTGTTTCTCTAAAATTGTTTATTTCTCAATTTCATTTTCTAACAAGTCATTTTTAGTGGTTGCCAAACACTAGAAATTTTTTCAAAATGATTTATTTTTCAAAATTAAACACTTGAAAAGTTAAACCAAACACACCCTAAATTATTTTCACCATAAGGAAAGCATATTTTTCAACAGGTACCAAAAAGGACCTCATTATCTAAACTCTCCTAAAAAGCATGCCCTAGCTTGCTATCTCAATTGTATGCAATGGAGAGTATATACATCTAGTTTTCAATTTTGATTTTATATTCATTTTCAATTATTCACCATATAGGCCTTTGTTTTGAGAAACTGATGGCATGTTGTGGTTGTTTTTACCCCCAATGACCTTGGGGTCGCCTATCGTTGTTTGCTTATAACACGAAGTTTGATTTTTGCATTTTCATATCACATATCTGTCTTTATAACTACTATATTTATATAGTTTTTTTTTCTTTTCTTTCTTTCTCTCTCCAGTTCCGTAGTCCAAATAAAAATTACTATCATTTTCATATGGATTTTAAATTTGCACTCAACATAAATGCTTATACTCGTTAAAATGTGAACAGATAAATTTTCATGTGATTTGAATCGCTTGAGTTTCAAATCTCACAATTTCTGACTTGATGAAGATTATGCATTTGCCCTTTGAATCCCATTTTTGTAACTCGATTCTACTCTTGATCTGCAGGAAGGAGTGCAGCAACTTGTTTTGGGTCTATATATAATCAGAGGCGACAATATGTAATTACTCTTTTAGTTTACTCTATATATGCCTATGTCTTTGTATGCACGTACTACCTAACACACACACACCAACCTCAACTTAACTCAACTCAACTCAACTGGTAACCAGGAGGTCCGAGGTTCAAATCTCCTAACCTACATGTTATTGAACTCTAAAAAATATGTATGGCACACACAACGAACAATGTGAAAGTCGATACCTGATAATGGATTTCACAACCTCCTTGACCGTCTTTTTTGAGAAGTTTTTAAAACAAAGAGTATAGTGAAAACATGTTCAACTAACTATTTTTAAAATTTTGTTCATTCCTTCATTGCTTTTATATTATAAACTTTATCGTTTTGAAACTCGGTGTTGTTAATTTTCTGCAGAAGCATTGTTGGGGAGCTAGATGAGGAACTTGATTCTAATTTGGACTTGTCGAAATTGAGAGCTCATCCTCTCAAGCCTGTGATTCATTAA

mRNA sequence

ATGTTCACGGGAAAAGGGGAAGGAGGAAGAAGGAAGAAAGAACTCAGTGTCGCCGCCGTCGTCGCCGCTTCTTTCCGATTCAGTGCCGCGTTCGTCTTTCTTCCGTTCGTGCAGCCGCAGCCTCCCTCCCAGCGGATTGCACTGACTTTTTTTCTTGTTGTTGTTAAAGAAACAATATCAGTAATCACGAATGACGGCCGCAATATCGTGGGAGTGTTGAAAGGATTTGACCAGGCTACAAATATTATCCTTGATGAATCTCATGAACGCGTTTACTCAACCAAGGAAGGAGTGCAGCAACTTGTTTTGGGTCTATATATAATCAGAGGCGACAATATAAGCATTGTTGGGGAGCTAGATGAGGAACTTGATTCTAATTTGGACTTGTCGAAATTGAGAGCTCATCCTCTCAAGCCTGTGATTCATTAA

Coding sequence (CDS)

ATGTTCACGGGAAAAGGGGAAGGAGGAAGAAGGAAGAAAGAACTCAGTGTCGCCGCCGTCGTCGCCGCTTCTTTCCGATTCAGTGCCGCGTTCGTCTTTCTTCCGTTCGTGCAGCCGCAGCCTCCCTCCCAGCGGATTGCACTGACTTTTTTTCTTGTTGTTGTTAAAGAAACAATATCAGTAATCACGAATGACGGCCGCAATATCGTGGGAGTGTTGAAAGGATTTGACCAGGCTACAAATATTATCCTTGATGAATCTCATGAACGCGTTTACTCAACCAAGGAAGGAGTGCAGCAACTTGTTTTGGGTCTATATATAATCAGAGGCGACAATATAAGCATTGTTGGGGAGCTAGATGAGGAACTTGATTCTAATTTGGACTTGTCGAAATTGAGAGCTCATCCTCTCAAGCCTGTGATTCATTAA

Protein sequence

MFTGKGEGGRRKKELSVAAVVAASFRFSAAFVFLPFVQPQPPSQRIALTFFLVVVKETISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH
Homology
[Close]
BLAST of Lag0001555 vs. NCBI nr
Match: XP_028094514.1 (uncharacterized protein LOC114294600 [Camellia sinensis])

HSP 1 Score: 173.3 bits (438), Expect = 1.5e-39
Identity = 87/101 (86.14%), Postives = 92/101 (91.09%), Query Frame = 0 

Query: 42  PSQRIALTFFLVVVKETISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQL 101
           PS  +  +  L +  ETIS+ITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQL
Sbjct: 154 PSSGLVASLSLSLSLETISIITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQL 213

Query: 102 VLGLYIIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 143
           VLGLYIIRGDNISIVGELDEELD+NLDLSKLRAHPLKPVIH
Sbjct: 214 VLGLYIIRGDNISIVGELDEELDANLDLSKLRAHPLKPVIH 254

[Close]
BLAST of Lag0001555 vs. NCBI nr
Match: KAB1227682.1 (U6 snRNA-associated Sm-like protein LSm8 [Morella rubra])

HSP 1 Score: 172.6 bits (436), Expect = 2.5e-39
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0 

Query: 54  VVKETISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNI 113
           +V +TISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNI
Sbjct: 10  LVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNI 69

Query: 114 SIVGELDEELDSNLDLSKLRAHPLKPVIH 143
           SIVGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 70  SIVGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]
BLAST of Lag0001555 vs. NCBI nr
Match: KAA8542646.1 (hypothetical protein F0562_023855 [Nyssa sinensis])

HSP 1 Score: 172.6 bits (436), Expect = 2.5e-39
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0 

Query: 54  VVKETISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNI 113
           +V +TISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNI
Sbjct: 92  LVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNI 151

Query: 114 SIVGELDEELDSNLDLSKLRAHPLKPVIH 143
           SIVGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 152 SIVGELDEELDSNLDLSKLRAHPLKPVIH 180

[Close]
BLAST of Lag0001555 vs. NCBI nr
Match: XP_022155134.1 (sm-like protein LSM8 [Momordica charantia] >XP_022955136.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955137.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955138.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955139.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022955140.1 sm-like protein LSM8 [Cucurbita moschata] >XP_022994688.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994689.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994690.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994691.1 sm-like protein LSM8 [Cucurbita maxima] >XP_022994692.1 sm-like protein LSM8 [Cucurbita maxima] >XP_023541242.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo] >XP_023541244.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo] >XP_023541245.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo] >XP_023541246.1 sm-like protein LSM8 [Cucurbita pepo subsp. pepo] >XP_038893733.1 sm-like protein LSM8 isoform X1 [Benincasa hispida] >XP_038893734.1 sm-like protein LSM8 isoform X1 [Benincasa hispida] >XP_038893735.1 sm-like protein LSM8 isoform X1 [Benincasa hispida] >KAG6573000.1 Sm-like protein LSM8, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012184.1 Sm-like protein LSM8, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 172.6 bits (436), Expect = 2.5e-39
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0 

Query: 54  VVKETISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNI 113
           +V +TISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNI
Sbjct: 10  LVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNI 69

Query: 114 SIVGELDEELDSNLDLSKLRAHPLKPVIH 143
           SIVGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 70  SIVGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]
BLAST of Lag0001555 vs. NCBI nr
Match: KAA8547639.1 (hypothetical protein F0562_004068 [Nyssa sinensis])

HSP 1 Score: 172.6 bits (436), Expect = 2.5e-39
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 0 

Query: 54  VVKETISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNI 113
           +V +TISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNI
Sbjct: 10  LVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNI 69

Query: 114 SIVGELDEELDSNLDLSKLRAHPLKPVIH 143
           SIVGELDEELDSNLDLSKLRAHPLKPVIH
Sbjct: 70  SIVGELDEELDSNLDLSKLRAHPLKPVIH 98

[Close]
BLAST of Lag0001555 vs. ExPASy Swiss-Prot
Match: Q8VYI0 (Sm-like protein LSM8 OS=Arabidopsis thaliana OX=3702 GN=LSM8 PE=1 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 4.9e-38
Identity = 78/96 (81.25%), Postives = 86/96 (89.58%), Query Frame = 0 

Query: 47  ALTFFLVVVKETISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLY 106
           A T    +V + ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STKEGVQQ VLGLY
Sbjct: 3   ATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLY 62

Query: 107 IIRGDNISIVGELDEELDSNLDLSKLRAHPLKPVIH 143
           IIRGDNI ++GELDEELD++LD SKLRAHPLKPV+H
Sbjct: 63  IIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH 98

[Close]
BLAST of Lag0001555 vs. ExPASy Swiss-Prot
Match: Q3ZCE0 (U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus OX=9913 GN=LSM8 PE=3 SV=3)

HSP 1 Score: 127.5 bits (319), Expect = 1.2e-28
Identity = 56/88 (63.64%), Postives = 73/88 (82.95%), Query Frame = 0 

Query: 55  VKETISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNIS 114
           +  T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RGDN++
Sbjct: 9   INRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVA 68

Query: 115 IVGELDEELDSNLDLSKLRAHPLKPVIH 143
           ++GE+DEE DS LDL  +RA PL  V H
Sbjct: 69  VIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]
BLAST of Lag0001555 vs. ExPASy Swiss-Prot
Match: O95777 (U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens OX=9606 GN=LSM8 PE=1 SV=3)

HSP 1 Score: 127.5 bits (319), Expect = 1.2e-28
Identity = 56/88 (63.64%), Postives = 73/88 (82.95%), Query Frame = 0 

Query: 55  VKETISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNIS 114
           +  T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RGDN++
Sbjct: 9   INRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVA 68

Query: 115 IVGELDEELDSNLDLSKLRAHPLKPVIH 143
           ++GE+DEE DS LDL  +RA PL  V H
Sbjct: 69  VIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]
BLAST of Lag0001555 vs. ExPASy Swiss-Prot
Match: Q6ZWM4 (U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus OX=10090 GN=Lsm8 PE=1 SV=3)

HSP 1 Score: 127.5 bits (319), Expect = 1.2e-28
Identity = 56/88 (63.64%), Postives = 73/88 (82.95%), Query Frame = 0 

Query: 55  VKETISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNIS 114
           +  T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RGDN++
Sbjct: 9   INRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVA 68

Query: 115 IVGELDEELDSNLDLSKLRAHPLKPVIH 143
           ++GE+DEE DS LDL  +RA PL  V H
Sbjct: 69  VIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]
BLAST of Lag0001555 vs. ExPASy Swiss-Prot
Match: Q5RCP3 (U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii OX=9601 GN=LSM8 PE=3 SV=3)

HSP 1 Score: 127.5 bits (319), Expect = 1.2e-28
Identity = 56/88 (63.64%), Postives = 73/88 (82.95%), Query Frame = 0 

Query: 55  VKETISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNIS 114
           +  T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RGDN++
Sbjct: 9   INRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVA 68

Query: 115 IVGELDEELDSNLDLSKLRAHPLKPVIH 143
           ++GE+DEE DS LDL  +RA PL  V H
Sbjct: 69  VIGEIDEETDSALDLGNIRAEPLNSVAH 96

The following BLAST results are available for this feature:
BLAST of Lag0001555 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_028094514.11.5e-3986.14uncharacterized protein LOC114294600 [Camellia sinensis][more]
KAB1227682.12.5e-3996.63U6 snRNA-associated Sm-like protein LSm8 [Morella rubra][more]
KAA8542646.12.5e-3996.63hypothetical protein F0562_023855 [Nyssa sinensis][more]
XP_022155134.12.5e-3996.63sm-like protein LSM8 [Momordica charantia] >XP_022955136.1 sm-like protein LSM8 ... [more]
KAA8547639.12.5e-3996.63hypothetical protein F0562_004068 [Nyssa sinensis][more]
BLAST of Lag0001555 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8VYI04.9e-3881.25Sm-like protein LSM8 OS=Arabidopsis thaliana OX=3702 GN=LSM8 PE=1 SV=1[more]
Q3ZCE01.2e-2863.64U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus OX=9913 GN=LSM8 PE=3 SV=3[more]
O957771.2e-2863.64U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens OX=9606 GN=LSM8 PE=1 SV... [more]
Q6ZWM41.2e-2863.64U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus OX=10090 GN=Lsm8 PE=1 S... [more]
Q5RCP31.2e-2863.64U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii OX=9601 GN=LSM8 PE=3 SV... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 49..118
e-value: 7.8E-15
score: 65.3
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 54..117
e-value: 6.8E-16
score: 57.7
NoneNo IPR availableGENE3D2.30.30.100coord: 52..141
e-value: 3.8E-24
score: 86.8
NoneNo IPR availablePANTHERPTHR15588:SF9U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM8coord: 55..142
IPR044642U6 snRNA-associated Sm-like protein Lsm1/8PANTHERPTHR15588LSM1coord: 55..142
IPR034103Sm-like protein Lsm8CDDcd01727LSm8coord: 55..138
e-value: 3.45234E-47
score: 145.746
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 54..125

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0001555.1Lag0001555.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0046540 U4/U6 x U5 tri-snRNP complex
cellular_component GO:0005688 U6 snRNP
molecular_function GO:0003723 RNA binding