Lag0001531 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001531
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Cyclin-dependent protein kinase inhibitor SMR2
Location	chr4: 32525516 .. 32527637 (-)
RNA-Seq Expression	Lag0001531
Synteny	Lag0001531

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGAATTTCACAAATCCGATCTCCAAAAGTCAGTACAAACTCAAAAGTCACTGGAAGAAGCTAATCGGAGCGACGACGAAGACGGTCGAGAAGCCCTTCAGGTGGCACCCGATGGTGGCGGAGAGAGCTGCCGAACTCCGACATCTCTCCGACATCGAATTCCGACCGTGCGAAGCTGCCCGACGACGCCAAGAAAGCGGAAAGTTGTGAGCAAGAGGAAATTTTCAGATCAAAGCTTCTTTGAGGCCACAGGAAGGGGAGAGGTAGAGTCCTTGTTTGGCTTATTTTATCGTGAGGGAAATGAAATGGAGAATACGGAAGAATGAAGAAGACGGGAGATGGAGAAGAAGACCGATGGAGATGACCGGAAAAGTAGAGAAGAAATGGAAGCCAATAGAAAGGGCATTTTAGTAATTTTACCTTTTAGATGGCAATATTTTGCCATTTTTGCAAATAGTTTCAACGGCTGCTATTTTTGTAATTATTTTGGGCCAGTTTGCTCCGTTTGCAACCGGTCCTTATTTTATTCCATGTATTTTTAATGTACTAAATAAAATGAATATTTTTTTTGAAAAGAAATAAAATGAATATTTTGTAACATATATATTCCATTACTAGGATATAAAATAATGTATTTTAATAAAAAGTTCTAATTGTCAAAAAAAAAAATAATAATAATAATAATAAAAATTAGAATATTAATAAAAGAACTATTGGATATTCAAACTTCTGAATGAAAGGTTGCGATTATAATACATTAATAGTTATACTATGTTCAGATTGACGATTATAATTTTGGTTTCTAAAGCTTTATGTGAGTTATGTCTATTTAGTTTATGTATTTAAAATATTTAATAAGTATTTAATATTTTGAGGTTGGATCGTCAATATAGTCATTGGTATATGTATTTCAAAAAAATCTAATGAGTTAGTACATTTAAAATTTCTCAGTTCTATCCGTCTAATGTGTATGTCATCAACTATTTGAACCTACTCAAAATTAGCTTGTCATGTGATCCTAATATAATATAGTTAACATGTTATATGCAACTATTAATAAAGTTAAAGATTGAATCTTATTAAATGAAAAATTGAAAGTTCAAGATATATAGAATATTTTTAAAGTACAAAAACCAAATTGATACAAATTTTATAAGTCCATGGGGACATATTAAAATTTTGGGAAAAATACACTTTTGCACCTTGAAGTAGGGGTTAGGTTTGGTTAGGTTTTTATTTTTGTCTCTGAGATTTCAAACTCAGACATTTTAGTCCCTGAGGTTTGAATTTTGTTTCATTTTGGTCCCTCCATCAATTTTCCGGTAATAACTAATGGATTCCAGCTGTGACACATATTTTCATTTAAAAAATATTTTTTTAATTCTCTCTTCTTCTTCAAGTCTAGCCACCACCCTCAGCCACTAGTGACCGCCTCTCGTCAGTCACTACCGACAGCCGGCCGGCACCGCTACTGATGGATATATATATATATTCATATTCCTTCTTCCTCCTTTCACTTCTTTTCTTTCACTCATTTAAAAATGAAAGGGGAAAGGAAAATCCCATTCGAATTGGACTAGAACGTGTGATTCGAAGGGGTTTTCCCCTTTGTTATAGGCAAAATTATCCAATAGTGTTTTATGCAGAATAAAGCCCAAACTAGTCGGGCAGTAGTCAGGAGAAGCCGAACCGACGAAGCAAAGGGCCGGAACTCCTTCTGGCCACGATGAATCCCCTCGGCCTCGACCCAAGGGAGATGACGAGGAGGAGGTCAGCCTCGGCCATAGCCGAGGCCGACCAAGGCCAAAGGCCCAGTATGCCAGAAGGTCGGCAACCACGCAAACCCTAATTGAAGCTTATAAAAGGGAGACGACACACGTATTCAGGTACGCTGAAACTTCACCCTAAATACATTCTGCGTGTTCCCCAATCAAGGCTAACTTAAGCATCAGAGTGCTTGTGGTCTACACCACACCGGTGTGCATCGCTTGCTTGTCTTGCAGGTCACGTTTCTCTCGCTCATCTACAAATTCACTGTTGTTGTCACGTGGAGCGAGGAACAAATTCCTGAGCGAAATTCGACCATCAACAGTTGGCGTCGTCTGTGGGAGAGGCTGA

mRNA sequence

ATGTCTGAATTTCACAAATCCGATCTCCAAAAGTCAGTACAAACTCAAAAGTCACTGGAAGAAGCTAATCGGAGCGACGACGAAGACGGTCGAGAAGCCCTTCAGGTGGCACCCGATGGTGGCGGAGAGAGCTGCCGAACTCCGACATCTCTCCGACATCGAATTCCGACCGTGCGAAGCTGCCCGACGACGCCAAGAAAGCGGAAAGTTGTGAGCAAGAGGAAATTTTCAGATCAAAGCTTCTTTGAGGCCACAGGAAGGGGAGAGTCAGGAGAAGCCGAACCGACGAAGCAAAGGGCCGGAACTCCTTCTGGCCACGATGAATCCCCTCGGCCTCGACCCAAGGGAGATGACGAGGAGGAGGTCAGCCTCGGCCATAGCCGAGGCCGACCAAGGCCAAAGGCCCAGTATGCCAGAAGGTCGGCAACCACGCAAACCCTAATTGAAGCTTATAAAAGGGAGACGACACACGTATTCAGGTCACGTTTCTCTCGCTCATCTACAAATTCACTGTTGTTGTCACGTGGAGCGAGGAACAAATTCCTGAGCGAAATTCGACCATCAACAGTTGGCGTCGTCTGTGGGAGAGGCTGA

Coding sequence (CDS)

ATGTCTGAATTTCACAAATCCGATCTCCAAAAGTCAGTACAAACTCAAAAGTCACTGGAAGAAGCTAATCGGAGCGACGACGAAGACGGTCGAGAAGCCCTTCAGGTGGCACCCGATGGTGGCGGAGAGAGCTGCCGAACTCCGACATCTCTCCGACATCGAATTCCGACCGTGCGAAGCTGCCCGACGACGCCAAGAAAGCGGAAAGTTGTGAGCAAGAGGAAATTTTCAGATCAAAGCTTCTTTGAGGCCACAGGAAGGGGAGAGTCAGGAGAAGCCGAACCGACGAAGCAAAGGGCCGGAACTCCTTCTGGCCACGATGAATCCCCTCGGCCTCGACCCAAGGGAGATGACGAGGAGGAGGTCAGCCTCGGCCATAGCCGAGGCCGACCAAGGCCAAAGGCCCAGTATGCCAGAAGGTCGGCAACCACGCAAACCCTAATTGAAGCTTATAAAAGGGAGACGACACACGTATTCAGGTCACGTTTCTCTCGCTCATCTACAAATTCACTGTTGTTGTCACGTGGAGCGAGGAACAAATTCCTGAGCGAAATTCGACCATCAACAGTTGGCGTCGTCTGTGGGAGAGGCTGA

Protein sequence

MSEFHKSDLQKSVQTQKSLEEANRSDDEDGREALQVAPDGGGESCRTPTSLRHRIPTVRSCPTTPRKRKVVSKRKFSDQSFFEATGRGESGEAEPTKQRAGTPSGHDESPRPRPKGDDEEEVSLGHSRGRPRPKAQYARRSATTQTLIEAYKRETTHVFRSRFSRSSTNSLLLSRGARNKFLSEIRPSTVGVVCGRG

Homology

[Close]

BLAST of Lag0001531 vs. NCBI nr
Match: KAG6586014.1 (hypothetical protein SDJN03_18747, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037379.1 hypothetical protein SDJN02_01004, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 123.6 bits (309), Expect = 1.9e-24
Identity = 64/89 (71.91%), Postives = 72/89 (80.90%), Query Frame = 0


Query: 1  MSEFHKSDLQKSVQTQKSLEEANRSDDEDGREALQVAPDGGGESCRTPTSLRHRIPTVRS 60
          MSEF  SD QKS++ QK  EE +RS +EDG EAL    DGGGESCRTP+SL+HRIP  RS
Sbjct: 1  MSEFQNSDHQKSLEPQKPAEEVDRSKEEDGGEALLAVEDGGGESCRTPSSLKHRIPAARS 60

Query: 61 CPTTPRKRKVVSKRKFSDQSFFEATGRGE 90
          CPTTPRK+KVVSKRKFSDQSFFE+T R E
Sbjct: 61 CPTTPRKKKVVSKRKFSDQSFFESTRREE 89

[Close]

BLAST of Lag0001531 vs. NCBI nr
Match: KAA0052125.1 (cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa] >TYJ98071.1 cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa])

HSP 1 Score: 114.8 bits (286), Expect = 8.6e-22
Identity = 59/89 (66.29%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 1  MSEFHKSDLQKSVQTQKSLEEANRSDDEDGREALQVAPDGGGESCRTPTSLRHRIPTVRS 60
          MS+ HKSD +K ++T K+LE  +RS +E   EAL+ A D  GESCRTPTSLRHRIP  +S
Sbjct: 1  MSQIHKSDQEKVLETPKALEYGDRSTEEGSGEALKAAEDDEGESCRTPTSLRHRIPIAQS 60

Query: 61 CPTTPRKRKVVSKRKFSDQSFFEATGRGE 90
          CPTTPRK++V  KRK SDQSFFEATGRGE
Sbjct: 61 CPTTPRKQRVARKRKISDQSFFEATGRGE 89

[Close]

BLAST of Lag0001531 vs. NCBI nr
Match: KAG6583595.1 (hypothetical protein SDJN03_19527, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 113.2 bits (282), Expect = 2.5e-21
Identity = 64/89 (71.91%), Postives = 68/89 (76.40%), Query Frame = 0


Query: 1  MSEFHKSDLQKSVQTQKSLEEANRSDDEDGREALQVAPDGGGESCRTPTSLRHRIPTVRS 60
          MS+FHKSD QK  +  K  EE +RS +EDG      A D GGESCRTPTSLRHRIPT RS
Sbjct: 1  MSQFHKSDHQKVKEPPKPPEEGDRSKEEDGGGE---AVDCGGESCRTPTSLRHRIPTARS 60

Query: 61 CPTTPRKRKVVSKRKFSDQSFFEATGRGE 90
           PTTPRKRKV SKRKFSDQSFFE TGRGE
Sbjct: 61 YPTTPRKRKVASKRKFSDQSFFEVTGRGE 86

[Close]

BLAST of Lag0001531 vs. NCBI nr
Match: KAG7019295.1 (hypothetical protein SDJN02_18255, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-20
Identity = 62/89 (69.66%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 1  MSEFHKSDLQKSVQTQKSLEEANRSDDEDGREALQVAPDGGGESCRTPTSLRHRIPTVRS 60
          MS+FHKSD QK  +  K  EE +RS +EDG      A D  GESCRTPTSLRHRIPT RS
Sbjct: 1  MSQFHKSDHQKVKEPPKPPEEGDRSKEEDGGGE---AVDCSGESCRTPTSLRHRIPTARS 60

Query: 61 CPTTPRKRKVVSKRKFSDQSFFEATGRGE 90
           PTTPRKRK+ SKRKFSDQSFFE TGRGE
Sbjct: 61 YPTTPRKRKIASKRKFSDQSFFEVTGRGE 86

[Close]

BLAST of Lag0001531 vs. NCBI nr
Match: KAE8652786.1 (hypothetical protein Csa_022878 [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 3.6e-20
Identity = 57/89 (64.04%), Postives = 69/89 (77.53%), Query Frame = 0


Query: 1  MSEFHKSDLQKSVQTQKSLEEANRSDDEDGREALQVAPDGGGESCRTPTSLRHRIPTVRS 60
          MS+FHKSD QK ++  ++ E  +RS +E   EAL+ A    GESCRTPTS +HRIP  +S
Sbjct: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQS 60

Query: 61 CPTTPRKRKVVSKRKFSDQSFFEATGRGE 90
          CPTTPRK++VV KRKFSDQSFFEATGRGE
Sbjct: 61 CPTTPRKQRVVRKRKFSDQSFFEATGRGE 89

[Close]

BLAST of Lag0001531 vs. ExPASy TrEMBL
Match: A0A5D3BHE9 (Cyclin-dependent protein kinase inhibitor SMR2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold565G00010 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.2e-22
Identity = 59/89 (66.29%), Postives = 70/89 (78.65%), Query Frame = 0


Query: 1  MSEFHKSDLQKSVQTQKSLEEANRSDDEDGREALQVAPDGGGESCRTPTSLRHRIPTVRS 60
          MS+ HKSD +K ++T K+LE  +RS +E   EAL+ A D  GESCRTPTSLRHRIP  +S
Sbjct: 1  MSQIHKSDQEKVLETPKALEYGDRSTEEGSGEALKAAEDDEGESCRTPTSLRHRIPIAQS 60

Query: 61 CPTTPRKRKVVSKRKFSDQSFFEATGRGE 90
          CPTTPRK++V  KRK SDQSFFEATGRGE
Sbjct: 61 CPTTPRKQRVARKRKISDQSFFEATGRGE 89

[Close]

BLAST of Lag0001531 vs. ExPASy TrEMBL
Match: A0A0A0LV74 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G135270 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.8e-20
Identity = 57/89 (64.04%), Postives = 69/89 (77.53%), Query Frame = 0


Query: 1  MSEFHKSDLQKSVQTQKSLEEANRSDDEDGREALQVAPDGGGESCRTPTSLRHRIPTVRS 60
          MS+FHKSD QK ++  ++ E  +RS +E   EAL+ A    GESCRTPTS +HRIP  +S
Sbjct: 1  MSQFHKSDQQKVLEAPEAPEHGDRSTEEGRGEALKAAEHDDGESCRTPTSPQHRIPIAQS 60

Query: 61 CPTTPRKRKVVSKRKFSDQSFFEATGRGE 90
          CPTTPRK++VV KRKFSDQSFFEATGRGE
Sbjct: 61 CPTTPRKQRVVRKRKFSDQSFFEATGRGE 89

[Close]

BLAST of Lag0001531 vs. ExPASy TrEMBL
Match: A0A067F2H9 (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0381851mg PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.9e-06
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 24  RSDDEDGREALQVAPDGGGESCRTPTSLRHRIPTVRSCPTTPRKRKVVS--KRKFSDQSF 83
           ++++E G E    + D   E C+TPTS  H+IP ++SCPTTPRK+  VS  KRK  +  F
Sbjct: 37  QTEEEAGEEIQAASEDYTNEDCKTPTSSDHKIPKIQSCPTTPRKKVQVSFHKRKMHEFLF 96

Query: 84  FEATGRGE 90
           FEATGR E
Sbjct: 97  FEATGREE 104

[Close]

BLAST of Lag0001531 vs. ExPASy TrEMBL
Match: V4RSW1 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029845mg PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.9e-06
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 24 RSDDEDGREALQVAPDGGGESCRTPTSLRHRIPTVRSCPTTPRKRKVVS--KRKFSDQSF 83
          ++++E G E    + D   E C+TPTS  H+IP ++SCPTTPRK+  VS  KRK  +  F
Sbjct: 28 QTEEEAGEEIQAASEDYTNEDCKTPTSSDHKIPKIQSCPTTPRKKVQVSFHKRKMHEFLF 87

Query: 84 FEATGRGE 90
          FEATGR E
Sbjct: 88 FEATGREE 95

[Close]

BLAST of Lag0001531 vs. ExPASy TrEMBL
Match: A0A2H5Q221 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_188970 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.9e-06
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 0


Query: 24 RSDDEDGREALQVAPDGGGESCRTPTSLRHRIPTVRSCPTTPRKRKVVS--KRKFSDQSF 83
          ++++E G E    + D   E C+TPTS  H+IP ++SCPTTPRK+  VS  KRK  +  F
Sbjct: 28 QTEEEAGEEIQAASEDYTNEDCKTPTSSDHKIPKIQSCPTTPRKKGQVSFHKRKMHEFLF 87

Query: 84 FEATGRGE 90
          FEATGR E
Sbjct: 88 FEATGREE 95

The following BLAST results are available for this feature:

BLAST of Lag0001531 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6586014.1	1.9e-24	71.91	hypothetical protein SDJN03_18747, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0052125.1	8.6e-22	66.29	cyclin-dependent protein kinase inhibitor SMR2 [Cucumis melo var. makuwa] >TYJ98...	[more]
KAG6583595.1	2.5e-21	71.91	hypothetical protein SDJN03_19527, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7019295.1	1.6e-20	69.66	hypothetical protein SDJN02_18255, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAE8652786.1	3.6e-20	64.04	hypothetical protein Csa_022878 [Cucumis sativus]	[more]

BLAST of Lag0001531 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0001531 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BHE9	4.2e-22	66.29	Cyclin-dependent protein kinase inhibitor SMR2 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A0A0LV74	1.8e-20	64.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G135270 PE=4 SV=1	[more]
A0A067F2H9	1.9e-06	50.00	Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0381851...	[more]
V4RSW1	1.9e-06	50.00	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10029845mg PE=4 ...	[more]
A0A2H5Q221	1.9e-06	50.00	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_188970 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..128
None	No IPR available	PANTHER	PTHR33142:SF13	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR2-LIKE	coord: 10..89
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 10..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001531.1	Lag0001531.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045839	negative regulation of mitotic nuclear division
biological_process	GO:0032875	regulation of DNA endoreduplication
cellular_component	GO:0005634	nucleus