Lag0001516 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0001516
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionSenescence-associated protein
Locationchr4: 32224528 .. 32224899 (-)
RNA-Seq ExpressionLag0001516
SyntenyLag0001516
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCGACTTCCTGTTCCTAGTCCGTCCCTGGTCGGTAAGCGGCGACCCGCTCTCGCCGCGGAAGCAGCTCGAGCAGTCCACAGACAGCCAAGGGTTCGGGACTGGGACCCCCGTGCCAGCCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGATCCATTTTGCCGACTTCCCTTGCCTACATTCTTCCATCGACCAGAGTTTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGCATGGGAGGCACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGGCGTATCGGACACCACGCGACGTGCGGTGCTCTTCCAGCCGCTGGACCCTACCTCCGGCTAAGCAGTCTCCGGACTCCCTAA

mRNA sequence

ATGACTCGACTTCCTGTTCCTAGTCCGTCCCTGGTCGGTAAGCGGCGACCCGCTCTCGCCGCGGAAGCAGCTCGAGCAGTCCACAGACAGCCAAGGGTTCGGGACTGGGACCCCCGTGCCAGCCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGATCCATTTTGCCGACTTCCCTTGCCTACATTCTTCCATCGACCAGAGTTTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGCATGGGAGGCACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGGCGTATCGGACACCACGCGACGTGCGGTGCTCTTCCAGCCGCTGGACCCTACCTCCGGCTAAGCAGTCTCCGGACTCCCTAA

Coding sequence (CDS)

ATGACTCGACTTCCTGTTCCTAGTCCGTCCCTGGTCGGTAAGCGGCGACCCGCTCTCGCCGCGGAAGCAGCTCGAGCAGTCCACAGACAGCCAAGGGTTCGGGACTGGGACCCCCGTGCCAGCCCTCAGAGCCAATCCTTTTCCCGAGGTTACGGATCCATTTTGCCGACTTCCCTTGCCTACATTCTTCCATCGACCAGAGTTTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGCATGGGAGGCACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGGCGTATCGGACACCACGCGACGTGCGGTGCTCTTCCAGCCGCTGGACCCTACCTCCGGCTAAGCAGTCTCCGGACTCCCTAA

Protein sequence

MTRLPVPSPSLVGKRRPALAAEAARAVHRQPRVRDWDPRASPQSQSFSRGYGSILPTSLAYILPSTRVCSPWRPDAVMSTTGHGRHSVLRIFKGRRGRIGHHATCGALPAAGPYLRLSSLRTP
Homology
BLAST of Lag0001516 vs. NCBI nr
Match: TKR97782.1 (senescence-associated protein [Populus alba])

HSP 1 Score: 182.6 bits (462), Expect = 2.1e-42
Identity = 94/115 (81.74%), Postives = 95/115 (82.61%), Query Frame = 0

Query: 5   PVPSPSLVGKRRPALAAEAARAVHRQPR-VRDWDPRASPQSQSFSRGYGSILPTSLAYIL 64
           P P     G RRPALAA AARAVHRQP       P  SPQSQSFSRGYGSILPTSLAYI+
Sbjct: 191 PFPVRPPAGTRRPALAAGAARAVHRQPTGFGTGTPEPSPQSQSFSRGYGSILPTSLAYIV 250

Query: 65  PSTRVCSPWRPDAVMSTTGHGRHSVLRIFKGRRGRIGHHATCGALPAAGPYLRLS 119
           PSTR CSPWRPDAVMSTTG GRHSVLRIFKGRRGR GHHATCGALPAAGPYLRLS
Sbjct: 251 PSTRGCSPWRPDAVMSTTGRGRHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLS 305

BLAST of Lag0001516 vs. NCBI nr
Match: CAB4308037.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 176.0 bits (445), Expect = 2.0e-40
Identity = 94/116 (81.03%), Postives = 96/116 (82.76%), Query Frame = 0

Query: 4   LPVPSPSLVGKRRPALAAEAARAVHRQPRVRDWDPRA-SPQSQSFSRGYGSILPTSLAYI 63
           LPV  P+  G RRPALAA AARAVHRQP      P   SPQSQSFSRGYGSILPTSLAYI
Sbjct: 229 LPVRPPA--GTRRPALAAGAARAVHRQPTGSGLGPPVPSPQSQSFSRGYGSILPTSLAYI 288

Query: 64  LPSTRVCSPWRPDAVMSTTGHGRHSVLRIFKGRRGRIGHHATCGALPAAGPYLRLS 119
           +PSTR CSPWRPDAVMSTTG   HSVLRIFKGRRGR GHHATCGALPAAGPYLRLS
Sbjct: 289 VPSTRGCSPWRPDAVMSTTGREWHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLS 342

BLAST of Lag0001516 vs. NCBI nr
Match: KEH17021.1 (senescence-associated protein [Medicago truncatula])

HSP 1 Score: 174.9 bits (442), Expect = 4.4e-40
Identity = 90/122 (73.77%), Postives = 97/122 (79.51%), Query Frame = 0

Query: 3   RLPVPSPSLVGKRRPALAAEAARAVHRQ-PRVRDWDPRASPQSQSFSRGYGSILPTSLAY 62
           ++P P     G RRPALAA AA+AV +Q        P  SPQSQSFSRGYGSILPTSLAY
Sbjct: 166 KVPFPVRPPTGTRRPALAAGAAQAVRQQADGFETGTPVPSPQSQSFSRGYGSILPTSLAY 225

Query: 63  ILPSTRVCSPWRPDAVMSTTGHGRHSVLRIFKGRRGRIGHHATCGALPAAGPYLRLSSLR 122
           I+PSTR CSPWRPDAVMSTTGHGRHSVLRIFKGR+GR GHHATCGALPAAG YLRLS  +
Sbjct: 226 IVPSTRGCSPWRPDAVMSTTGHGRHSVLRIFKGRQGRTGHHATCGALPAAGTYLRLSRFQ 285

Query: 123 TP 124
            P
Sbjct: 286 VP 287

BLAST of Lag0001516 vs. NCBI nr
Match: KAF1856211.1 (hypothetical protein Lal_00046813 [Lupinus albus])

HSP 1 Score: 171.8 bits (434), Expect = 3.7e-39
Identity = 81/87 (93.10%), Postives = 82/87 (94.25%), Query Frame = 0

Query: 32  RVRDWDPRASPQSQSFSRGYGSILPTSLAYILPSTRVCSPWRPDAVMSTTGHGRHSVLRI 91
           RVRDWDP  SPQSQSFSRGYGSILPTSLAYI+PSTR CSPWRPDAVMSTTG GRHSVLRI
Sbjct: 223 RVRDWDPVPSPQSQSFSRGYGSILPTSLAYIVPSTRGCSPWRPDAVMSTTGRGRHSVLRI 282

Query: 92  FKGRRGRIGHHATCGALPAAGPYLRLS 119
           FKGRRGR GHHATCGALPAAGPYLRLS
Sbjct: 283 FKGRRGRTGHHATCGALPAAGPYLRLS 309

BLAST of Lag0001516 vs. NCBI nr
Match: KAF1854971.1 (hypothetical protein Lal_00048039 [Lupinus albus])

HSP 1 Score: 169.1 bits (427), Expect = 2.4e-38
Identity = 80/87 (91.95%), Postives = 81/87 (93.10%), Query Frame = 0

Query: 32  RVRDWDPRASPQSQSFSRGYGSILPTSLAYILPSTRVCSPWRPDAVMSTTGHGRHSVLRI 91
           RVRDW P  SPQSQSFSRGYGSILPTSLAYI+PSTR CSPWRPDAVMSTTG GRHSVLRI
Sbjct: 223 RVRDWTPVPSPQSQSFSRGYGSILPTSLAYIVPSTRGCSPWRPDAVMSTTGRGRHSVLRI 282

Query: 92  FKGRRGRIGHHATCGALPAAGPYLRLS 119
           FKGRRGR GHHATCGALPAAGPYLRLS
Sbjct: 283 FKGRRGRTGHHATCGALPAAGPYLRLS 309

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TKR97782.12.1e-4281.74senescence-associated protein [Populus alba][more]
CAB4308037.12.0e-4081.03unnamed protein product [Prunus armeniaca][more]
KEH17021.14.4e-4073.77senescence-associated protein [Medicago truncatula][more]
KAF1856211.13.7e-3993.10hypothetical protein Lal_00046813 [Lupinus albus][more]
KAF1854971.12.4e-3891.95hypothetical protein Lal_00048039 [Lupinus albus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..51
NoneNo IPR availablePANTHERPTHR33047PROTEIN TAR1coord: 5..118
NoneNo IPR availablePANTHERPTHR33047:SF22SENESCENCE-ASSOCIATED PROTEINcoord: 5..118

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0001516.1Lag0001516.1mRNA