Lag0001511 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001511
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Integrase catalytic domain-containing protein
Location	chr4: 32175596 .. 32176878 (-)
RNA-Seq Expression	Lag0001511
Synteny	Lag0001511

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCACGAAGAAGCCAAGCAATTATGGGACTTGGTTCAAGAATATTATGGGGTTCAGTTGAGATCTCAAGAAGACTACAACAGATTAATGCTACAACAAACAAGAAAATGTACTGTGAAAATGTATGAATATCTTGATATTATGAAAAGACATTTTGATAATCTTCAAGTTGTTGGACACCCAATGGATATGAAGAGCTTTATTTCACATGTAACTGTTGGTCTCGATGAGGAATATACCCCAACAATGTGTGTTATTAGGAACCAAAACATGAGCTGGAGTTGTTGTCATTTGAGCAAAGACAGGAGAGACTCCAAGCCCTCAAAGGTTCCATCTCTATAAATCAAGTATCAACCATGCTTGCCATTCATCAATATTGCAAGCATAGAACAATCCAAGCCCCCATATGCTATGACAAACAACAATGGATCATCCCAAAACCAACAACATCAGAATAGGAATCCTTACCACAACAGGGGAAATAGATTTAGGGGAAGAAATCGCTACTCACCATACCCTCCTAACAACCGGCCTACATGTCAAAATTGTGGAAAAATGGGGCATATAGTTGCGGTTTGCTATCATAGGTATGATAAAGCTACCAACAACTCCACGACTACTACAATAAATGCTAGAAACTCTCAGGGAAATCAGGAAACAAATACTCCAGTGACTTTGATGGCTTATCCAAAGACATTGCAAGACCCCTCATAGTACTTGGATAGTGGAACCAACAATCATGTAGTCTCGGACCTTGGAAAATTGTCTCTCAAAGGTACACACTCTTCTCTTGAACATGTAATAGTTGGAAATGAAGAAAAATTACCTATCACTTGTATGAGAACTGCCTATATCAATACTAGGAACAGGAAGTTGACCCTTAAGGATATTTTTTGTGTACCTCTCATGAAAAAGAATCTCACAAGTATCTCAAAACTTACTCAAGACAACTTGATCACGTGGAATTTTTTTAATTTGTTTGTATTGTTAAGGAAAGAATAACCAGTGAGATTTGCCTCATAGGAAGGTTGAAAAATGGTCTCTACAAGCTGCAGAACGCAAAGCATGCCTCAAGTAGATCAAGAATGGACAATAATGCAACCACCCTTTTGAACTCCAAGGGAGCAACTTCTGTGACTAAGAGCATGGGCAAGAAAGACCAAAGGAATCTGATAAATGTTGTTAATTTTGTGCTTTTTGTCTTGTACCATGGATGTTTGGCACCAAAGATTGGGTCATCCTTCTCTAAGTGTTTTCAGTCAAATTCTCCAAAATTGTAA

mRNA sequence

ATGGGTCACGAAGAAGCCAAGCAATTATGGGACTTGGTTCAAGAATATTATGGGGTTCAGTTGAGATCTCAAGAAGACTACAACAGATTAATGCTACAACAAACAAGAAAATGTACTGTGAAAATGTATGAATATCTTGATATTATGAAAAGACATTTTGATAATCTTCAAGTTGTTGGACACCCAATGGATATGAAGAGCTTTATTTCACATGTAACTGTTGGTCTCGATGAGGAATATACCCCAACAATGTGTGTTATTAGGAACCAAAACATGAGCTGGAGTTGTTGTCATTTGAGCAAAGACAGGAGAGACTCCAAGCCCTCAAAGGAAAGAATAACCAGTGAGATTTGCCTCATAGGAAGGTTGAAAAATGGTCTCTACAAGCTGCAGAACGCAAAGCATGCCTCAAGTAGATCAAGAATGGACAATAATGCAACCACCCTTTTGAACTCCAAGGGAGCAACTTCTGTGACTAAGAGCATGGGCAAGAAAGACCAAAGGAATCTGATAAATGTTGTTAATTTTGTGCTTTTTGTCTTGTACCATGGATGTTTGGCACCAAAGATTGGGTCATCCTTCTCTAAGTGTTTTCAGTCAAATTCTCCAAAATTGTAA

Coding sequence (CDS)

ATGGGTCACGAAGAAGCCAAGCAATTATGGGACTTGGTTCAAGAATATTATGGGGTTCAGTTGAGATCTCAAGAAGACTACAACAGATTAATGCTACAACAAACAAGAAAATGTACTGTGAAAATGTATGAATATCTTGATATTATGAAAAGACATTTTGATAATCTTCAAGTTGTTGGACACCCAATGGATATGAAGAGCTTTATTTCACATGTAACTGTTGGTCTCGATGAGGAATATACCCCAACAATGTGTGTTATTAGGAACCAAAACATGAGCTGGAGTTGTTGTCATTTGAGCAAAGACAGGAGAGACTCCAAGCCCTCAAAGGAAAGAATAACCAGTGAGATTTGCCTCATAGGAAGGTTGAAAAATGGTCTCTACAAGCTGCAGAACGCAAAGCATGCCTCAAGTAGATCAAGAATGGACAATAATGCAACCACCCTTTTGAACTCCAAGGGAGCAACTTCTGTGACTAAGAGCATGGGCAAGAAAGACCAAAGGAATCTGATAAATGTTGTTAATTTTGTGCTTTTTGTCTTGTACCATGGATGTTTGGCACCAAAGATTGGGTCATCCTTCTCTAAGTGTTTTCAGTCAAATTCTCCAAAATTGTAA

Protein sequence

MGHEEAKQLWDLVQEYYGVQLRSQEDYNRLMLQQTRKCTVKMYEYLDIMKRHFDNLQVVGHPMDMKSFISHVTVGLDEEYTPTMCVIRNQNMSWSCCHLSKDRRDSKPSKERITSEICLIGRLKNGLYKLQNAKHASSRSRMDNNATTLLNSKGATSVTKSMGKKDQRNLINVVNFVLFVLYHGCLAPKIGSSFSKCFQSNSPKL

Homology

[Close]

BLAST of Lag0001511 vs. NCBI nr
Match: XP_022148963.1 (uncharacterized protein LOC111017501 [Momordica charantia])

HSP 1 Score: 92.4 bits (228), Expect = 4.8e-15
Identity = 45/95 (47.37%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 1   MGHEEAKQLWDLVQEYYGVQLRSQEDYNRLMLQQTRKCTVKMYEYLDIMKRHFDNLQVVG 60
           MG+E A  LW  +QE +GVQ +++EDY R + QQTRK ++KM ++L +MK H DNL   G
Sbjct: 62  MGYENACDLWAAIQELFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKSHADNLGQAG 121

Query: 61  HPMDMKSFISHVTVGLDEEYTPTMCVIR-NQNMSW 95
            P+  +S IS V +GLDEEY P +  I+  + +SW
Sbjct: 122 SPVPTRSLISQVLLGLDEEYNPVVATIQGKRGISW 156

[Close]

BLAST of Lag0001511 vs. NCBI nr
Match: XP_038875081.1 (uncharacterized protein LOC120067610 [Benincasa hispida])

HSP 1 Score: 90.5 bits (223), Expect = 1.8e-14
Identity = 55/152 (36.18%), Postives = 83/152 (54.61%), Query Frame = 0


Query: 1   MGHEEAKQLWDLVQEYYGVQLRSQEDYNRLMLQQTRKCTVKMYEYLDIMKRHFDNLQVVG 60
           MGH+  K+LW+ V+E  GVQ R++ DY + M QQTRK T+KM EYL + K++ DNL   G
Sbjct: 1   MGHQTTKKLWEDVKELVGVQSRAETDYLKRMFQQTRKATLKMSEYLTLTKKYADNLAFAG 60

Query: 61  HPMDMKSFISHVTVGLDEEYTPTMCVIRNQNMS-WSCCHLSKDRRDSKPSKERITSEICL 120
            PM     IS V  GLDEEY P +  ++++  + WS      D +    S E+       
Sbjct: 61  PPMSPPDLISQVLSGLDEEYNPVVVAVKSKGTTRWS------DLQSDLLSYEKRLEYQLA 120

Query: 121 IGRLKNGLYKLQNAKHASSRSRMDNNATTLLN 152
           I     G+  +  + ++ S + + N+ +TL N
Sbjct: 121 IKTNITGMTNVSISSNSPSVNVVQNSPSTLSN 146

[Close]

BLAST of Lag0001511 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 88.6 bits (218), Expect = 6.9e-14
Identity = 42/99 (42.42%), Postives = 64/99 (64.65%), Query Frame = 0


Query: 1   MGHEEAKQLWDLVQEYYGVQLRSQEDYNRLMLQQTRKCTVKMYEYLDIMKRHFDNLQVVG 60
           MG   +++LW  VQE +GVQ R++ DY + + QQT K +++M EYL +MK H DNL + G
Sbjct: 127 MGFSTSRELWTAVQELFGVQSRAEVDYLKQVFQQTCKGSLQMIEYLKLMKSHADNLALAG 186

Query: 61  HPMDMKSFISHVTVGLDEEYTPTMCVIRNQ-NMSWSCCH 99
             + ++  +S V  GLDEEY P +  ++ + N+SWS  H
Sbjct: 187 SSVSVRDLVSQVLTGLDEEYNPIVVAVQGKVNLSWSEMH 225

[Close]

BLAST of Lag0001511 vs. NCBI nr
Match: XP_038902487.1 (uncharacterized protein LOC120089143 [Benincasa hispida])

HSP 1 Score: 88.6 bits (218), Expect = 6.9e-14
Identity = 43/96 (44.79%), Postives = 64/96 (66.67%), Query Frame = 0


Query: 1   MGHEEAKQLWDLVQEYYGVQLRSQEDYNRLMLQQTRKCTVKMYEYLDIMKRHFDNLQVVG 60
           MG+E  K LW  +QE +G+Q R+ EDY R + QQT K  +KM EYL +MK H DNL + G
Sbjct: 160 MGYENYKYLWAAIQELFGLQSRAGEDYLRQVFQQTCKGAMKMPEYLRVMKTHSDNLGLTG 219

Query: 61  HPMDMKSFISHVTVGLDEEYTPTMCVIRNQN-MSWS 96
            P+  ++ +S V +GLDEE+ P +  I+ ++ +SW+
Sbjct: 220 SPVPTRALVSQVLLGLDEEFNPFVATIQGRSEISWT 255

[Close]

BLAST of Lag0001511 vs. NCBI nr
Match: XP_038896600.1 (uncharacterized protein LOC120084860 [Benincasa hispida])

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-13
Identity = 45/95 (47.37%), Postives = 61/95 (64.21%), Query Frame = 0


Query: 1   MGHEEAKQLWDLVQEYYGVQLRSQEDYNRLMLQQTRKCTVKMYEYLDIMKRHFDNLQVVG 60
           MG+E AK+LW  +QE +GVQ R++EDY R + QQTRK   KM  YL +MK H DNL    
Sbjct: 10  MGYETAKELWQAIQELFGVQSRAEEDYLRQLFQQTRKGGQKMSGYLKLMKLHSDNLAQTS 69

Query: 61  HPMDMKSFISHVTVGLDEEYTPTMCVIRNQ-NMSW 95
            P+  ++ IS V +GLDEEY   +  I+ +  +SW
Sbjct: 70  SPVSTRTLISQVLLGLDEEYNLVVVGIQGKPGISW 104

[Close]

BLAST of Lag0001511 vs. ExPASy TrEMBL
Match: A0A6J1D5J0 (uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017501 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.3e-15
Identity = 45/95 (47.37%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 1   MGHEEAKQLWDLVQEYYGVQLRSQEDYNRLMLQQTRKCTVKMYEYLDIMKRHFDNLQVVG 60
           MG+E A  LW  +QE +GVQ +++EDY R + QQTRK ++KM ++L +MK H DNL   G
Sbjct: 62  MGYENACDLWAAIQELFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKSHADNLGQAG 121

Query: 61  HPMDMKSFISHVTVGLDEEYTPTMCVIR-NQNMSW 95
            P+  +S IS V +GLDEEY P +  I+  + +SW
Sbjct: 122 SPVPTRSLISQVLLGLDEEYNPVVATIQGKRGISW 156

[Close]

BLAST of Lag0001511 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 3.3e-14
Identity = 42/99 (42.42%), Postives = 64/99 (64.65%), Query Frame = 0


Query: 1   MGHEEAKQLWDLVQEYYGVQLRSQEDYNRLMLQQTRKCTVKMYEYLDIMKRHFDNLQVVG 60
           MG   +++LW  VQE +GVQ R++ DY + + QQT K +++M EYL +MK H DNL + G
Sbjct: 127 MGFSTSRELWTAVQELFGVQSRAEVDYLKQVFQQTCKGSLQMIEYLKLMKSHADNLALAG 186

Query: 61  HPMDMKSFISHVTVGLDEEYTPTMCVIRNQ-NMSWSCCH 99
             + ++  +S V  GLDEEY P +  ++ + N+SWS  H
Sbjct: 187 SSVSVRDLVSQVLTGLDEEYNPIVVAVQGKVNLSWSEMH 225

[Close]

BLAST of Lag0001511 vs. ExPASy TrEMBL
Match: A0A5A7SIT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00360 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.7e-13
Identity = 44/95 (46.32%), Postives = 62/95 (65.26%), Query Frame = 0


Query: 1   MGHEEAKQLWDLVQEYYGVQLRSQEDYNRLMLQQTRKCTVKMYEYLDIMKRHFDNLQVVG 60
           MG    + LWD  Q+++GVQ R++ED+ R MLQ TRK   KM EYL +MK + DNL  VG
Sbjct: 132 MGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLVMKTNVDNLGQVG 191

Query: 61  HPMDMKSFISHVTVGLDEEYTPTMCVIRNQ-NMSW 95
            P+  ++ IS V +GLDE Y   + VI+ + ++SW
Sbjct: 192 SPVPRRALISQVLLGLDEVYNLVIVVIQGKPDISW 226

[Close]

BLAST of Lag0001511 vs. ExPASy TrEMBL
Match: A0A5D3C373 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002430 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 5.3e-12
Identity = 54/172 (31.40%), Postives = 86/172 (50.00%), Query Frame = 0


Query: 1   MGHEEAKQLWDLVQEYYGVQLRSQEDYNRLMLQQTRKCTVKMYEYLDIMKRHFDNLQVVG 60
           MG   AK LW+  Q+ +GVQ R++ED+ R M Q TRK      +YL IMK + D L   G
Sbjct: 50  MGFTNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKVRASYEDYLRIMKTNSDKLGQAG 109

Query: 61  HPMDMKSFISHVTVGLDEEYTPTMCVIRNQ-NMSWSCCH---LSKDRR----DSKPSKER 120
            P+  ++FIS   +GLDE Y P + VI+ +  +SW       L+ ++R    D++ + E 
Sbjct: 110 SPVPKRAFISQALLGLDEVYNPVIAVIQGKPEISWIDMQSELLTFEKRLEHQDTQKNTEN 169

Query: 121 ITSEICLIGRLKNGLYKLQNAKHASSRSRMDNNATTLLNSKGATSVTKSMGK 165
           I   +  I + +N      + +  S+     NN       +G  ++ +  GK
Sbjct: 170 IIQNVVNIAQNRNS----SDFRKYSNHQFHGNNRNNSQGQRGGFNIGRGRGK 217

[Close]

BLAST of Lag0001511 vs. ExPASy TrEMBL
Match: A0A0A0K3F9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G091720 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.5e-11
Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 0


Query: 1  MGHEEAKQLWDLVQEYYGVQLRSQEDYNRLMLQQTRKCTVKMYEYLDIMKRHFDNLQVVG 60
          MG   AK LW+ +Q+ +GVQLR++ED+ R   Q T+K   KM +YL  MK + DNL   G
Sbjct: 10 MGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKTNVDNLDQAG 69

Query: 61 HPMDMKSFISHVTVGLDEEYTPTMCVI 88
            + + S IS V +GLDE Y P   VI
Sbjct: 70 SHVPLHSLISQVILGLDEIYNPVTAVI 96

The following BLAST results are available for this feature:

BLAST of Lag0001511 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148963.1	4.8e-15	47.37	uncharacterized protein LOC111017501 [Momordica charantia]	[more]
XP_038875081.1	1.8e-14	36.18	uncharacterized protein LOC120067610 [Benincasa hispida]	[more]
XP_022151683.1	6.9e-14	42.42	uncharacterized protein LOC111019598 [Momordica charantia]	[more]
XP_038902487.1	6.9e-14	44.79	uncharacterized protein LOC120089143 [Benincasa hispida]	[more]
XP_038896600.1	1.2e-13	47.37	uncharacterized protein LOC120084860 [Benincasa hispida]	[more]

BLAST of Lag0001511 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0001511 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D5J0	2.3e-15	47.37	uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1DCW4	3.3e-14	42.42	uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A5A7SIT7	1.7e-13	46.32	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C373	5.3e-12	31.40	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A0A0K3F9	4.5e-11	45.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G091720 PE=4 SV=1	[more]

BLAST of Lag0001511 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001511.1	Lag0001511.1	mRNA