Lag0001491 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001491
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	auxin-induced protein 15A-like
Location	chr4: 31910291 .. 31910593 (+)
RNA-Seq Expression	Lag0001491
Synteny	Lag0001491

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTCCGTCTGCCTAGAATTGTTCAAGCTAAGCAAAGTCTTCAGCGATCTTCATCAACAGGAAATGGAGCATCTCCGAGGGCTGTCGATGTTCCAAAGGGCTATTTTACCGTTTATGTCGGTGACGTACAAAAGAAGCGTTTTGTCATTCCACTATCTTACTTGAACCAACCATCTTTTCAAGATTTGTTGAGTCAAGCAGAAGAAGAATTTGGATATAATCATCCAATGGGTGGCATCACAATTCCTTGCAGTGAAGATTATTTCCTCGATCTCACTCGAAGTTTGAATGACTCATGA

mRNA sequence

ATGGGTTTCCGTCTGCCTAGAATTGTTCAAGCTAAGCAAAGTCTTCAGCGATCTTCATCAACAGGAAATGGAGCATCTCCGAGGGCTGTCGATGTTCCAAAGGGCTATTTTACCGTTTATGTCGGTGACGTACAAAAGAAGCGTTTTGTCATTCCACTATCTTACTTGAACCAACCATCTTTTCAAGATTTGTTGAGTCAAGCAGAAGAAGAATTTGGATATAATCATCCAATGGGTGGCATCACAATTCCTTGCAGTGAAGATTATTTCCTCGATCTCACTCGAAGTTTGAATGACTCATGA

Coding sequence (CDS)

ATGGGTTTCCGTCTGCCTAGAATTGTTCAAGCTAAGCAAAGTCTTCAGCGATCTTCATCAACAGGAAATGGAGCATCTCCGAGGGCTGTCGATGTTCCAAAGGGCTATTTTACCGTTTATGTCGGTGACGTACAAAAGAAGCGTTTTGTCATTCCACTATCTTACTTGAACCAACCATCTTTTCAAGATTTGTTGAGTCAAGCAGAAGAAGAATTTGGATATAATCATCCAATGGGTGGCATCACAATTCCTTGCAGTGAAGATTATTTCCTCGATCTCACTCGAAGTTTGAATGACTCATGA

Protein sequence

MGFRLPRIVQAKQSLQRSSSTGNGASPRAVDVPKGYFTVYVGDVQKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMGGITIPCSEDYFLDLTRSLNDS

Homology

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BLAST of Lag0001491 vs. NCBI nr
Match: XP_022952257.1 (auxin-induced protein 15A-like [Cucurbita moschata])

HSP 1 Score: 196.1 bits (497), Expect = 1.5e-46
Identity = 94/100 (94.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MGFRLPRIVQAKQSLQRSSSTGNGASPRAVDVPKGYFTVYVGDVQKKRFVIPLSYLNQPS 60
           MGFRLPRIV  KQSLQRSSSTGNGASP+AVDVPKGYFTVYVG+ QKKRFVIPLSYLNQPS
Sbjct: 1   MGFRLPRIVSTKQSLQRSSSTGNGASPKAVDVPKGYFTVYVGEAQKKRFVIPLSYLNQPS 60

Query: 61  FQDLLSQAEEEFGYNHPMGGITIPCSEDYFLDLTRSLNDS 101
           FQDLLSQAEEEFGYNHPMGGITIPCSED FLDLTRSLNDS
Sbjct: 61  FQDLLSQAEEEFGYNHPMGGITIPCSEDNFLDLTRSLNDS 100

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BLAST of Lag0001491 vs. NCBI nr
Match: XP_022952255.1 (auxin-induced protein X10A-like [Cucurbita moschata] >KAG6572085.1 hypothetical protein SDJN03_28813, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 195.7 bits (496), Expect = 1.9e-46
Identity = 94/100 (94.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MGFRLPRIVQAKQSLQRSSSTGNGASPRAVDVPKGYFTVYVGDVQKKRFVIPLSYLNQPS 60
           MGFRLPRIV  KQSLQRSSSTGNGASP+AVDVPKGYFTVYVG+ QKKRFVIPLSYLNQPS
Sbjct: 1   MGFRLPRIVSTKQSLQRSSSTGNGASPKAVDVPKGYFTVYVGEAQKKRFVIPLSYLNQPS 60

Query: 61  FQDLLSQAEEEFGYNHPMGGITIPCSEDYFLDLTRSLNDS 101
           FQDLLSQAEEEFGYNHPMGGITIPCSED FLDLTRSLNDS
Sbjct: 61  FQDLLSQAEEEFGYNHPMGGITIPCSEDDFLDLTRSLNDS 100

[Close]

BLAST of Lag0001491 vs. NCBI nr
Match: XP_038887900.1 (auxin-induced protein X10A-like [Benincasa hispida])

HSP 1 Score: 194.5 bits (493), Expect = 4.3e-46
Identity = 94/100 (94.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MGFRLPRIVQAKQSLQRSSSTGNGASPRAVDVPKGYFTVYVGDVQKKRFVIPLSYLNQPS 60
           MGFRLPRIV AKQSLQRSSSTGNGASP+AVDVPKGYFTVYVG+ QKKRFVIPLSYLNQPS
Sbjct: 40  MGFRLPRIVTAKQSLQRSSSTGNGASPKAVDVPKGYFTVYVGEEQKKRFVIPLSYLNQPS 99

Query: 61  FQDLLSQAEEEFGYNHPMGGITIPCSEDYFLDLTRSLNDS 101
           FQDLLSQAEEEFGYNHPMGGITIPC ED FLDLTRSLNDS
Sbjct: 100 FQDLLSQAEEEFGYNHPMGGITIPCREDEFLDLTRSLNDS 139

[Close]

BLAST of Lag0001491 vs. NCBI nr
Match: XP_023553777.1 (auxin-induced protein X10A-like [Cucurbita pepo subsp. pepo] >XP_023553882.1 auxin-induced protein X10A-like [Cucurbita pepo subsp. pepo] >XP_023554331.1 auxin-induced protein X10A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 194.1 bits (492), Expect = 5.7e-46
Identity = 93/100 (93.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MGFRLPRIVQAKQSLQRSSSTGNGASPRAVDVPKGYFTVYVGDVQKKRFVIPLSYLNQPS 60
           MGFRLPRIV  KQSLQRSSSTGNGASP+AVDVPKGYFTVYVG+ QKKRFVIPLSYLNQPS
Sbjct: 1   MGFRLPRIVSTKQSLQRSSSTGNGASPKAVDVPKGYFTVYVGEAQKKRFVIPLSYLNQPS 60

Query: 61  FQDLLSQAEEEFGYNHPMGGITIPCSEDYFLDLTRSLNDS 101
           FQDLLSQAEEEFGYNHPMGGITIPCSED FL+LTRSLNDS
Sbjct: 61  FQDLLSQAEEEFGYNHPMGGITIPCSEDDFLELTRSLNDS 100

[Close]

BLAST of Lag0001491 vs. NCBI nr
Match: XP_038887256.1 (auxin-induced protein X10A-like [Benincasa hispida])

HSP 1 Score: 194.1 bits (492), Expect = 5.7e-46
Identity = 93/100 (93.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MGFRLPRIVQAKQSLQRSSSTGNGASPRAVDVPKGYFTVYVGDVQKKRFVIPLSYLNQPS 60
           MGFRLPRI+ AK+SLQRSSSTGNGASP+AVDVPKGYFTVYVG VQKKRF I LSYLNQPS
Sbjct: 1   MGFRLPRIITAKKSLQRSSSTGNGASPKAVDVPKGYFTVYVGGVQKKRFFIQLSYLNQPS 60

Query: 61  FQDLLSQAEEEFGYNHPMGGITIPCSEDYFLDLTRSLNDS 101
           FQDLLSQAEEEFGYNHPMGGITIPCSEDYFLDLTRSLNDS
Sbjct: 61  FQDLLSQAEEEFGYNHPMGGITIPCSEDYFLDLTRSLNDS 100

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BLAST of Lag0001491 vs. ExPASy Swiss-Prot
Match: P33080 (Auxin-induced protein X10A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.9e-29
Identity = 62/99 (62.63%), Postives = 77/99 (77.78%), Query Frame = 0


Query: 1   MGFRLPRIVQAKQSLQRSSSTGNGASPRAVDVPKGYFTVYVGDVQKKRFVIPLSYLNQPS 60
           MGFRLP        ++++S   N AS ++V+VPKGY  VYVGD + +RF+IP+SYLNQPS
Sbjct: 1   MGFRLP-------GIRKTSIAANQASSKSVEVPKGYLVVYVGD-KMRRFLIPVSYLNQPS 60

Query: 61  FQDLLSQAEEEFGYNHPMGGITIPCSEDYFLDLTRSLND 100
           FQDLL+QAEEEFGY+HPMGG+TIPC ED FL +T  LND
Sbjct: 61  FQDLLNQAEEEFGYDHPMGGLTIPCKEDEFLTVTSHLND 91

[Close]

BLAST of Lag0001491 vs. ExPASy Swiss-Prot
Match: P33083 (Auxin-induced protein 6B OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.1e-27
Identity = 61/98 (62.24%), Postives = 75/98 (76.53%), Query Frame = 0


Query: 1  MGFRLPRIVQAKQSLQRSSSTGNGASPRAVDVPKGYFTVYVGDVQKKRFVIPLSYLNQPS 60
          MGFRLP        ++++S + N AS +AVDV KGY  VYVG+ + +RFVIP+SYLN+PS
Sbjct: 1  MGFRLP-------GIRKASFSANQASSKAVDVEKGYLAVYVGE-KMRRFVIPVSYLNKPS 60

Query: 61 FQDLLSQAEEEFGYNHPMGGITIPCSEDYFLDLTRSLN 99
          FQDLLSQAEEEFGY+HP GG+TIPCSED F  +T  LN
Sbjct: 61 FQDLLSQAEEEFGYHHPNGGLTIPCSEDVFQHITSFLN 90

[Close]

BLAST of Lag0001491 vs. ExPASy Swiss-Prot
Match: P32295 (Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata OX=3916 GN=ARG7 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-26
Identity = 59/98 (60.20%), Postives = 72/98 (73.47%), Query Frame = 0


Query: 1  MGFRLPRIVQAKQSLQRSSSTGNGASPRAVDVPKGYFTVYVGDVQKKRFVIPLSYLNQPS 60
          MGFRLP        ++++ S  N AS + +D PKGY  VYVG+   KRFVIP+S+LNQP 
Sbjct: 1  MGFRLP-------GIRKTLSARNEASSKVLDAPKGYLAVYVGE-NMKRFVIPVSHLNQPL 60

Query: 61 FQDLLSQAEEEFGYNHPMGGITIPCSEDYFLDLTRSLN 99
          FQDLLSQAEEEFGY+HPMGG+TIPCSED F  +T  L+
Sbjct: 61 FQDLLSQAEEEFGYDHPMGGLTIPCSEDLFQHITSCLS 90

[Close]

BLAST of Lag0001491 vs. ExPASy Swiss-Prot
Match: P33079 (Auxin-induced protein 10A5 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.0e-26
Identity = 59/99 (59.60%), Postives = 75/99 (75.76%), Query Frame = 0


Query: 1   MGFRLPRIVQAKQSLQRSSSTGNGASPRAVDVPKGYFTVYVGDVQKKRFVIPLSYLNQPS 60
           MGFR+  IV      +R+S     A+ + VDVPKGY  VYVGD + +RF IP+SYLN+PS
Sbjct: 1   MGFRIAGIV------RRTSFYTTQAASKRVDVPKGYAAVYVGD-KMRRFTIPVSYLNEPS 60

Query: 61  FQDLLSQAEEEFGYNHPMGGITIPCSEDYFLDLTRSLND 100
           FQ+LLSQAEEEFGY+HPMGG+TIPC E+ FL++T  LN+
Sbjct: 61  FQELLSQAEEEFGYDHPMGGLTIPCKEEEFLNVTAHLNE 92

[Close]

BLAST of Lag0001491 vs. ExPASy Swiss-Prot
Match: P33081 (Auxin-induced protein 15A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.0e-26
Identity = 61/98 (62.24%), Postives = 69/98 (70.41%), Query Frame = 0


Query: 1  MGFRLPRIVQAKQSLQRSSSTGNGASPRAVDVPKGYFTVYVGDVQKKRFVIPLSYLNQPS 60
          MGFRLP I +A                +A D PKGY  VYVG+ + KRFVIP+SYLNQPS
Sbjct: 1  MGFRLPGIRKAS---------------KAADAPKGYLAVYVGE-KLKRFVIPVSYLNQPS 60

Query: 61 FQDLLSQAEEEFGYNHPMGGITIPCSEDYFLDLTRSLN 99
          FQDLLSQAEEEFGY+HPMGG+TIPCSED F  +T  LN
Sbjct: 61 FQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQCITSCLN 82

The following BLAST results are available for this feature:

BLAST of Lag0001491 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022952257.1	1.5e-46	94.00	auxin-induced protein 15A-like [Cucurbita moschata]	[more]
XP_022952255.1	1.9e-46	94.00	auxin-induced protein X10A-like [Cucurbita moschata] >KAG6572085.1 hypothetical ...	[more]
XP_038887900.1	4.3e-46	94.00	auxin-induced protein X10A-like [Benincasa hispida]	[more]
XP_023553777.1	5.7e-46	93.00	auxin-induced protein X10A-like [Cucurbita pepo subsp. pepo] >XP_023553882.1 aux...	[more]
XP_038887256.1	5.7e-46	93.00	auxin-induced protein X10A-like [Benincasa hispida]	[more]

BLAST of Lag0001491 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P33080	2.9e-29	62.63	Auxin-induced protein X10A OS=Glycine max OX=3847 PE=2 SV=1	[more]
P33083	2.1e-27	62.24	Auxin-induced protein 6B OS=Glycine max OX=3847 PE=2 SV=1	[more]
P32295	1.8e-26	60.20	Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata OX=3916 ...	[more]
P33079	3.0e-26	59.60	Auxin-induced protein 10A5 OS=Glycine max OX=3847 PE=2 SV=1	[more]
P33081	4.0e-26	62.24	Auxin-induced protein 15A OS=Glycine max OX=3847 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 14..96 e-value: 3.2E-25 score: 88.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..30
None	No IPR available	PANTHER	PTHR31929:SF69	SUBFAMILY NOT NAMED	coord: 11..96
None	No IPR available	PANTHER	PTHR31929	SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED	coord: 11..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001491.1	Lag0001491.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin