Lag0001470 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0001470
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTransmembrane protein
Locationchr4: 31683643 .. 31684164 (-)
RNA-Seq ExpressionLag0001470
SyntenyLag0001470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCCCATACATCGCCCCACACTGAAGCACACCCCCAATCTCCCTCCCGCTATAAATCCACTGAACTCAACTCTCATTTCTCTCCATCTCAAAATTCTCAGAGCCCTCAACCAAAAATCCCCAAATCAATGAGCCATTACAGAAACAGAACCACCGCAGATTCAATTATCGATTCTCTCTCCCTCAATCCTCCGCCGTACCCTGTCCTCCTCCTCCTCGCCGTCGTCTCCGTCTTCCTAGGCGCCTCCTGGTGGCTCTCCTACGAGTCCGCCGTCGAGGCCGCCGAGGATCAGATCAACTGGATTCTCTTCGCCACGCCCGTCCTCCTCATCGTCCTCGTCCGATTCCTCTCCTCTGTCGATCCGAGCTTCTTCTTTTCCTCGCCGTGGGACCGCCGCCGCCGCACGCACCACCTCCCGGCCGAGGGGAGCTCTCCCTGGGGCGTCGCAGCGTTGATCGTGTTGCTGCTCGTTCTCGTTCAGTTCCAGTCCTCGTTCCGTGAGAGCTGGTCCATATAG

mRNA sequence

ATGGCTCCCCATACATCGCCCCACACTGAAGCACACCCCCAATCTCCCTCCCGCTATAAATCCACTGAACTCAACTCTCATTTCTCTCCATCTCAAAATTCTCAGAGCCCTCAACCAAAAATCCCCAAATCAATGAGCCATTACAGAAACAGAACCACCGCAGATTCAATTATCGATTCTCTCTCCCTCAATCCTCCGCCGTACCCTGTCCTCCTCCTCCTCGCCGTCGTCTCCGTCTTCCTAGGCGCCTCCTGGTGGCTCTCCTACGAGTCCGCCGTCGAGGCCGCCGAGGATCAGATCAACTGGATTCTCTTCGCCACGCCCGTCCTCCTCATCGTCCTCGTCCGATTCCTCTCCTCTGTCGATCCGAGCTTCTTCTTTTCCTCGCCGTGGGACCGCCGCCGCCGCACGCACCACCTCCCGGCCGAGGGGAGCTCTCCCTGGGGCGTCGCAGCGTTGATCGTGTTGCTGCTCGTTCTCGTTCAGTTCCAGTCCTCGTTCCGTGAGAGCTGGTCCATATAG

Coding sequence (CDS)

ATGGCTCCCCATACATCGCCCCACACTGAAGCACACCCCCAATCTCCCTCCCGCTATAAATCCACTGAACTCAACTCTCATTTCTCTCCATCTCAAAATTCTCAGAGCCCTCAACCAAAAATCCCCAAATCAATGAGCCATTACAGAAACAGAACCACCGCAGATTCAATTATCGATTCTCTCTCCCTCAATCCTCCGCCGTACCCTGTCCTCCTCCTCCTCGCCGTCGTCTCCGTCTTCCTAGGCGCCTCCTGGTGGCTCTCCTACGAGTCCGCCGTCGAGGCCGCCGAGGATCAGATCAACTGGATTCTCTTCGCCACGCCCGTCCTCCTCATCGTCCTCGTCCGATTCCTCTCCTCTGTCGATCCGAGCTTCTTCTTTTCCTCGCCGTGGGACCGCCGCCGCCGCACGCACCACCTCCCGGCCGAGGGGAGCTCTCCCTGGGGCGTCGCAGCGTTGATCGTGTTGCTGCTCGTTCTCGTTCAGTTCCAGTCCTCGTTCCGTGAGAGCTGGTCCATATAG

Protein sequence

MAPHTSPHTEAHPQSPSRYKSTELNSHFSPSQNSQSPQPKIPKSMSHYRNRTTADSIIDSLSLNPPPYPVLLLLAVVSVFLGASWWLSYESAVEAAEDQINWILFATPVLLIVLVRFLSSVDPSFFFSSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQSSFRESWSI
Homology
BLAST of Lag0001470 vs. NCBI nr
Match: XP_038888316.1 (uncharacterized protein LOC120078163 [Benincasa hispida])

HSP 1 Score: 248.1 bits (632), Expect = 5.7e-62
Identity = 123/129 (95.35%), Postives = 126/129 (97.67%), Query Frame = 0

Query: 45  MSHYRNRTTADSIIDSLSLNPPPYPVLLLLAVVSVFLGASWWLSYESAVEAAEDQINWIL 104
           M+ YRNRTTADSI+DSLSLNPPPYPVLLLLAVVS+FLGASWWLSYESAVEAAEDQINWIL
Sbjct: 1   MNPYRNRTTADSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDQINWIL 60

Query: 105 FATPVLLIVLVRFLSSVDPSFFFSSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQ 164
           FATPVLLIVLVR LSSVDPSFF SSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQ
Sbjct: 61  FATPVLLIVLVRVLSSVDPSFFSSSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQ 120

Query: 165 SSFRESWSI 174
           SSFRESWSI
Sbjct: 121 SSFRESWSI 129

BLAST of Lag0001470 vs. NCBI nr
Match: XP_022989070.1 (uncharacterized protein LOC111486253 [Cucurbita maxima])

HSP 1 Score: 243.0 bits (619), Expect = 1.8e-60
Identity = 120/129 (93.02%), Postives = 125/129 (96.90%), Query Frame = 0

Query: 45  MSHYRNRTTADSIIDSLSLNPPPYPVLLLLAVVSVFLGASWWLSYESAVEAAEDQINWIL 104
           MS+YR+RTTADSI+DSLSLNP PYPVLLLLAVV +FLGASWWLSYESAVEAAEDQINWIL
Sbjct: 1   MSNYRSRTTADSILDSLSLNPLPYPVLLLLAVVFIFLGASWWLSYESAVEAAEDQINWIL 60

Query: 105 FATPVLLIVLVRFLSSVDPSFFFSSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQ 164
           FATPVLLI+L RFLSSVDPSFF SSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQ
Sbjct: 61  FATPVLLIILARFLSSVDPSFFSSSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQ 120

Query: 165 SSFRESWSI 174
           SSFRESWSI
Sbjct: 121 SSFRESWSI 129

BLAST of Lag0001470 vs. NCBI nr
Match: KAA0049726.1 (hypothetical protein E6C27_scaffold76G00740 [Cucumis melo var. makuwa] >TYK12149.1 hypothetical protein E5676_scaffold106G00860 [Cucumis melo var. makuwa])

HSP 1 Score: 240.4 bits (612), Expect = 1.2e-59
Identity = 116/129 (89.92%), Postives = 125/129 (96.90%), Query Frame = 0

Query: 45  MSHYRNRTTADSIIDSLSLNPPPYPVLLLLAVVSVFLGASWWLSYESAVEAAEDQINWIL 104
           M+ YR+RTTADSI+DSLSLNPPPYPVLLLLAVVS+FLGASWWLSYESAVEAAED INWIL
Sbjct: 1   MTSYRSRTTADSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWIL 60

Query: 105 FATPVLLIVLVRFLSSVDPSFFFSSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQ 164
           FATPVLLI+LVRFLSS+DPSFF SSPWDRRRRTHH+PAEG+SPWGVAA IVLLLVL+QFQ
Sbjct: 61  FATPVLLILLVRFLSSLDPSFFSSSPWDRRRRTHHIPAEGTSPWGVAAFIVLLLVLLQFQ 120

Query: 165 SSFRESWSI 174
           SSFRESWSI
Sbjct: 121 SSFRESWSI 129

BLAST of Lag0001470 vs. NCBI nr
Match: KGN43227.1 (hypothetical protein Csa_020160 [Cucumis sativus])

HSP 1 Score: 240.4 bits (612), Expect = 1.2e-59
Identity = 118/144 (81.94%), Postives = 130/144 (90.28%), Query Frame = 0

Query: 30  PSQNSQSPQPKIPKSMSHYRNRTTADSIIDSLSLNPPPYPVLLLLAVVSVFLGASWWLSY 89
           P    +   P+   SM+ YRNRTTADSI+DSLSLNPPPYPVLLLLAVVS+FLGASWWLSY
Sbjct: 11  PLHPFKQTNPQNSNSMTSYRNRTTADSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSY 70

Query: 90  ESAVEAAEDQINWILFATPVLLIVLVRFLSSVDPSFFFSSPWDRRRRTHHLPAEGSSPWG 149
           ESAVEAAED INWILFATPVLLI+LVRFLSS+DP+FF SSPWDRRRRTHH+PAEG+SPWG
Sbjct: 71  ESAVEAAEDHINWILFATPVLLILLVRFLSSLDPTFFSSSPWDRRRRTHHIPAEGTSPWG 130

Query: 150 VAALIVLLLVLVQFQSSFRESWSI 174
           VAA I+LLLVL+QFQSSFRESWSI
Sbjct: 131 VAAFILLLLVLLQFQSSFRESWSI 154

BLAST of Lag0001470 vs. NCBI nr
Match: KAG6588994.1 (hypothetical protein SDJN03_17559, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 236.5 bits (602), Expect = 1.7e-58
Identity = 117/129 (90.70%), Postives = 123/129 (95.35%), Query Frame = 0

Query: 45  MSHYRNRTTADSIIDSLSLNPPPYPVLLLLAVVSVFLGASWWLSYESAVEAAEDQINWIL 104
           MS+YR+RTTADSI+DSLSLNP PYPVLLLLAVV +FLGASWWLSYESAVEAAEDQINWIL
Sbjct: 1   MSNYRSRTTADSILDSLSLNPLPYPVLLLLAVVFIFLGASWWLSYESAVEAAEDQINWIL 60

Query: 105 FATPVLLIVLVRFLSSVDPSFFFSSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQ 164
           FATPVLLI+L R LSSVDPS+F SSPWDRRRRTH LPAEGSSPWGVAALIVLLLVLVQFQ
Sbjct: 61  FATPVLLIILARILSSVDPSYFSSSPWDRRRRTHQLPAEGSSPWGVAALIVLLLVLVQFQ 120

Query: 165 SSFRESWSI 174
           SSFRESWSI
Sbjct: 121 SSFRESWSI 129

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038888316.15.7e-6295.35uncharacterized protein LOC120078163 [Benincasa hispida][more]
XP_022989070.11.8e-6093.02uncharacterized protein LOC111486253 [Cucurbita maxima][more]
KAA0049726.11.2e-5989.92hypothetical protein E6C27_scaffold76G00740 [Cucumis melo var. makuwa] >TYK12149... [more]
KGN43227.11.2e-5981.94hypothetical protein Csa_020160 [Cucumis sativus][more]
KAG6588994.11.7e-5890.70hypothetical protein SDJN03_17559, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..46
NoneNo IPR availablePANTHERPTHR33306EXPRESSED PROTEIN-RELATED-RELATEDcoord: 47..172
NoneNo IPR availablePANTHERPTHR33306:SF7EXPRESSED PROTEINcoord: 47..172

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0001470.1Lag0001470.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane