Lag0001470 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001470
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Transmembrane protein
Location	chr4: 31683643 .. 31684164 (-)
RNA-Seq Expression	Lag0001470
Synteny	Lag0001470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCCCATACATCGCCCCACACTGAAGCACACCCCCAATCTCCCTCCCGCTATAAATCCACTGAACTCAACTCTCATTTCTCTCCATCTCAAAATTCTCAGAGCCCTCAACCAAAAATCCCCAAATCAATGAGCCATTACAGAAACAGAACCACCGCAGATTCAATTATCGATTCTCTCTCCCTCAATCCTCCGCCGTACCCTGTCCTCCTCCTCCTCGCCGTCGTCTCCGTCTTCCTAGGCGCCTCCTGGTGGCTCTCCTACGAGTCCGCCGTCGAGGCCGCCGAGGATCAGATCAACTGGATTCTCTTCGCCACGCCCGTCCTCCTCATCGTCCTCGTCCGATTCCTCTCCTCTGTCGATCCGAGCTTCTTCTTTTCCTCGCCGTGGGACCGCCGCCGCCGCACGCACCACCTCCCGGCCGAGGGGAGCTCTCCCTGGGGCGTCGCAGCGTTGATCGTGTTGCTGCTCGTTCTCGTTCAGTTCCAGTCCTCGTTCCGTGAGAGCTGGTCCATATAG

mRNA sequence

ATGGCTCCCCATACATCGCCCCACACTGAAGCACACCCCCAATCTCCCTCCCGCTATAAATCCACTGAACTCAACTCTCATTTCTCTCCATCTCAAAATTCTCAGAGCCCTCAACCAAAAATCCCCAAATCAATGAGCCATTACAGAAACAGAACCACCGCAGATTCAATTATCGATTCTCTCTCCCTCAATCCTCCGCCGTACCCTGTCCTCCTCCTCCTCGCCGTCGTCTCCGTCTTCCTAGGCGCCTCCTGGTGGCTCTCCTACGAGTCCGCCGTCGAGGCCGCCGAGGATCAGATCAACTGGATTCTCTTCGCCACGCCCGTCCTCCTCATCGTCCTCGTCCGATTCCTCTCCTCTGTCGATCCGAGCTTCTTCTTTTCCTCGCCGTGGGACCGCCGCCGCCGCACGCACCACCTCCCGGCCGAGGGGAGCTCTCCCTGGGGCGTCGCAGCGTTGATCGTGTTGCTGCTCGTTCTCGTTCAGTTCCAGTCCTCGTTCCGTGAGAGCTGGTCCATATAG

Coding sequence (CDS)

ATGGCTCCCCATACATCGCCCCACACTGAAGCACACCCCCAATCTCCCTCCCGCTATAAATCCACTGAACTCAACTCTCATTTCTCTCCATCTCAAAATTCTCAGAGCCCTCAACCAAAAATCCCCAAATCAATGAGCCATTACAGAAACAGAACCACCGCAGATTCAATTATCGATTCTCTCTCCCTCAATCCTCCGCCGTACCCTGTCCTCCTCCTCCTCGCCGTCGTCTCCGTCTTCCTAGGCGCCTCCTGGTGGCTCTCCTACGAGTCCGCCGTCGAGGCCGCCGAGGATCAGATCAACTGGATTCTCTTCGCCACGCCCGTCCTCCTCATCGTCCTCGTCCGATTCCTCTCCTCTGTCGATCCGAGCTTCTTCTTTTCCTCGCCGTGGGACCGCCGCCGCCGCACGCACCACCTCCCGGCCGAGGGGAGCTCTCCCTGGGGCGTCGCAGCGTTGATCGTGTTGCTGCTCGTTCTCGTTCAGTTCCAGTCCTCGTTCCGTGAGAGCTGGTCCATATAG

Protein sequence

MAPHTSPHTEAHPQSPSRYKSTELNSHFSPSQNSQSPQPKIPKSMSHYRNRTTADSIIDSLSLNPPPYPVLLLLAVVSVFLGASWWLSYESAVEAAEDQINWILFATPVLLIVLVRFLSSVDPSFFFSSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQSSFRESWSI

Homology

[Close]

BLAST of Lag0001470 vs. NCBI nr
Match: XP_038888316.1 (uncharacterized protein LOC120078163 [Benincasa hispida])

HSP 1 Score: 248.1 bits (632), Expect = 5.7e-62
Identity = 123/129 (95.35%), Postives = 126/129 (97.67%), Query Frame = 0


Query: 45  MSHYRNRTTADSIIDSLSLNPPPYPVLLLLAVVSVFLGASWWLSYESAVEAAEDQINWIL 104
           M+ YRNRTTADSI+DSLSLNPPPYPVLLLLAVVS+FLGASWWLSYESAVEAAEDQINWIL
Sbjct: 1   MNPYRNRTTADSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDQINWIL 60

Query: 105 FATPVLLIVLVRFLSSVDPSFFFSSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQ 164
           FATPVLLIVLVR LSSVDPSFF SSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQ
Sbjct: 61  FATPVLLIVLVRVLSSVDPSFFSSSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQ 120

Query: 165 SSFRESWSI 174
           SSFRESWSI
Sbjct: 121 SSFRESWSI 129

[Close]

BLAST of Lag0001470 vs. NCBI nr
Match: XP_022989070.1 (uncharacterized protein LOC111486253 [Cucurbita maxima])

HSP 1 Score: 243.0 bits (619), Expect = 1.8e-60
Identity = 120/129 (93.02%), Postives = 125/129 (96.90%), Query Frame = 0


Query: 45  MSHYRNRTTADSIIDSLSLNPPPYPVLLLLAVVSVFLGASWWLSYESAVEAAEDQINWIL 104
           MS+YR+RTTADSI+DSLSLNP PYPVLLLLAVV +FLGASWWLSYESAVEAAEDQINWIL
Sbjct: 1   MSNYRSRTTADSILDSLSLNPLPYPVLLLLAVVFIFLGASWWLSYESAVEAAEDQINWIL 60

Query: 105 FATPVLLIVLVRFLSSVDPSFFFSSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQ 164
           FATPVLLI+L RFLSSVDPSFF SSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQ
Sbjct: 61  FATPVLLIILARFLSSVDPSFFSSSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQ 120

Query: 165 SSFRESWSI 174
           SSFRESWSI
Sbjct: 121 SSFRESWSI 129

[Close]

BLAST of Lag0001470 vs. NCBI nr
Match: KAA0049726.1 (hypothetical protein E6C27_scaffold76G00740 [Cucumis melo var. makuwa] >TYK12149.1 hypothetical protein E5676_scaffold106G00860 [Cucumis melo var. makuwa])

HSP 1 Score: 240.4 bits (612), Expect = 1.2e-59
Identity = 116/129 (89.92%), Postives = 125/129 (96.90%), Query Frame = 0


Query: 45  MSHYRNRTTADSIIDSLSLNPPPYPVLLLLAVVSVFLGASWWLSYESAVEAAEDQINWIL 104
           M+ YR+RTTADSI+DSLSLNPPPYPVLLLLAVVS+FLGASWWLSYESAVEAAED INWIL
Sbjct: 1   MTSYRSRTTADSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWIL 60

Query: 105 FATPVLLIVLVRFLSSVDPSFFFSSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQ 164
           FATPVLLI+LVRFLSS+DPSFF SSPWDRRRRTHH+PAEG+SPWGVAA IVLLLVL+QFQ
Sbjct: 61  FATPVLLILLVRFLSSLDPSFFSSSPWDRRRRTHHIPAEGTSPWGVAAFIVLLLVLLQFQ 120

Query: 165 SSFRESWSI 174
           SSFRESWSI
Sbjct: 121 SSFRESWSI 129

[Close]

BLAST of Lag0001470 vs. NCBI nr
Match: KGN43227.1 (hypothetical protein Csa_020160 [Cucumis sativus])

HSP 1 Score: 240.4 bits (612), Expect = 1.2e-59
Identity = 118/144 (81.94%), Postives = 130/144 (90.28%), Query Frame = 0


Query: 30  PSQNSQSPQPKIPKSMSHYRNRTTADSIIDSLSLNPPPYPVLLLLAVVSVFLGASWWLSY 89
           P    +   P+   SM+ YRNRTTADSI+DSLSLNPPPYPVLLLLAVVS+FLGASWWLSY
Sbjct: 11  PLHPFKQTNPQNSNSMTSYRNRTTADSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSY 70

Query: 90  ESAVEAAEDQINWILFATPVLLIVLVRFLSSVDPSFFFSSPWDRRRRTHHLPAEGSSPWG 149
           ESAVEAAED INWILFATPVLLI+LVRFLSS+DP+FF SSPWDRRRRTHH+PAEG+SPWG
Sbjct: 71  ESAVEAAEDHINWILFATPVLLILLVRFLSSLDPTFFSSSPWDRRRRTHHIPAEGTSPWG 130

Query: 150 VAALIVLLLVLVQFQSSFRESWSI 174
           VAA I+LLLVL+QFQSSFRESWSI
Sbjct: 131 VAAFILLLLVLLQFQSSFRESWSI 154

[Close]

BLAST of Lag0001470 vs. NCBI nr
Match: KAG6588994.1 (hypothetical protein SDJN03_17559, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 236.5 bits (602), Expect = 1.7e-58
Identity = 117/129 (90.70%), Postives = 123/129 (95.35%), Query Frame = 0


Query: 45  MSHYRNRTTADSIIDSLSLNPPPYPVLLLLAVVSVFLGASWWLSYESAVEAAEDQINWIL 104
           MS+YR+RTTADSI+DSLSLNP PYPVLLLLAVV +FLGASWWLSYESAVEAAEDQINWIL
Sbjct: 1   MSNYRSRTTADSILDSLSLNPLPYPVLLLLAVVFIFLGASWWLSYESAVEAAEDQINWIL 60

Query: 105 FATPVLLIVLVRFLSSVDPSFFFSSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQ 164
           FATPVLLI+L R LSSVDPS+F SSPWDRRRRTH LPAEGSSPWGVAALIVLLLVLVQFQ
Sbjct: 61  FATPVLLIILARILSSVDPSYFSSSPWDRRRRTHQLPAEGSSPWGVAALIVLLLVLVQFQ 120

Query: 165 SSFRESWSI 174
           SSFRESWSI
Sbjct: 121 SSFRESWSI 129

The following BLAST results are available for this feature:

BLAST of Lag0001470 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888316.1	5.7e-62	95.35	uncharacterized protein LOC120078163 [Benincasa hispida]	[more]
XP_022989070.1	1.8e-60	93.02	uncharacterized protein LOC111486253 [Cucurbita maxima]	[more]
KAA0049726.1	1.2e-59	89.92	hypothetical protein E6C27_scaffold76G00740 [Cucumis melo var. makuwa] >TYK12149...	[more]
KGN43227.1	1.2e-59	81.94	hypothetical protein Csa_020160 [Cucumis sativus]	[more]
KAG6588994.1	1.7e-58	90.70	hypothetical protein SDJN03_17559, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lag0001470 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	PANTHER	PTHR33306	EXPRESSED PROTEIN-RELATED-RELATED	coord: 47..172
None	No IPR available	PANTHER	PTHR33306:SF7	EXPRESSED PROTEIN	coord: 47..172

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001470.1	Lag0001470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane