Lag0001447 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001447
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ribonuclease H-like superfamily protein
Location	chr4: 31399966 .. 31400631 (+)
RNA-Seq Expression	Lag0001447
Synteny	Lag0001447

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCCATAACTCGTGGATAGATCATGATGTTTCACAATCTATATCACAACCATACGTCGACGGGCTATATCACAATCTGTCGGAGACCCACTTGAGTCACGGGCTATGGAAGCCGCCGGATAGCATGCAGTGGAAGATGAACGTCGACGCTGCGTGGTTCGATAGCTTGAACGTCGGAGGGGTGGGCTGGATTATCCGCAACTCAAATGGTTCTCTGATCGGAGCTGGAGGAAAAAAGATTTCCAGAAGAATGGATATCAGATTGCTAGAATCTTTAGCAATTTTAGAGGGGATGCGTCAAATTTATTCGAAGAGGCGTACTCACCCGGAGCTTTTCACCCGCGAAGTGGTGATCGAGTCTGATGCTGAGGAGATTGTCAAGCTGATCAATGGCGATTCTGAAGATATTTCGGATATTTCGGGATTAATCGATGAAATTAGGGAGTTGGCGATGAAGATCAGCATTGTGAAGATCGCCTTCAGCCCGAGATCGTCGAACTTGTTGGCGCACTCTCTTGCGCGCGCTGTTGCTAAAAATAGTGATTTTGTTTTTTTCCCTTTTGATCCTTCTCTGTGCTTGAGAATGGATGAGTCGTTGGTGGAGGCTCGTGATAGCCCCAGTTGGTTTTTCCCTTTTTTGGGAGGTTTGTTTGGTTGTATCTGA

mRNA sequence

ATGCTCCATAACTCGTGGATAGATCATGATGTTTCACAATCTATATCACAACCATACGTCGACGGGCTATATCACAATCTGTCGGAGACCCACTTGAGTCACGGGCTATGGAAGCCGCCGGATAGCATGCAGTGGAAGATGAACGTCGACGCTGCGTGGTTCGATAGCTTGAACGTCGGAGGGGTGGGCTGGATTATCCGCAACTCAAATGGTTCTCTGATCGGAGCTGGAGGAAAAAAGATTTCCAGAAGAATGGATATCAGATTGCTAGAATCTTTAGCAATTTTAGAGGGGATGCGTCAAATTTATTCGAAGAGGCGTACTCACCCGGAGCTTTTCACCCGCGAAGTGGTGATCGAGTCTGATGCTGAGGAGATTGTCAAGCTGATCAATGGCGATTCTGAAGATATTTCGGATATTTCGGGATTAATCGATGAAATTAGGGAGTTGGCGATGAAGATCAGCATTGTGAAGATCGCCTTCAGCCCGAGATCGTCGAACTTGTTGGCGCACTCTCTTGCGCGCGCTGTTGCTAAAAATAGTGATTTTGTTTTTTTCCCTTTTGATCCTTCTCTGTGCTTGAGAATGGATGAGTCGTTGGTGGAGGCTCGTGATAGCCCCAGTTGGTTTTTCCCTTTTTTGGGAGGTTTGTTTGGTTGTATCTGA

Coding sequence (CDS)

ATGCTCCATAACTCGTGGATAGATCATGATGTTTCACAATCTATATCACAACCATACGTCGACGGGCTATATCACAATCTGTCGGAGACCCACTTGAGTCACGGGCTATGGAAGCCGCCGGATAGCATGCAGTGGAAGATGAACGTCGACGCTGCGTGGTTCGATAGCTTGAACGTCGGAGGGGTGGGCTGGATTATCCGCAACTCAAATGGTTCTCTGATCGGAGCTGGAGGAAAAAAGATTTCCAGAAGAATGGATATCAGATTGCTAGAATCTTTAGCAATTTTAGAGGGGATGCGTCAAATTTATTCGAAGAGGCGTACTCACCCGGAGCTTTTCACCCGCGAAGTGGTGATCGAGTCTGATGCTGAGGAGATTGTCAAGCTGATCAATGGCGATTCTGAAGATATTTCGGATATTTCGGGATTAATCGATGAAATTAGGGAGTTGGCGATGAAGATCAGCATTGTGAAGATCGCCTTCAGCCCGAGATCGTCGAACTTGTTGGCGCACTCTCTTGCGCGCGCTGTTGCTAAAAATAGTGATTTTGTTTTTTTCCCTTTTGATCCTTCTCTGTGCTTGAGAATGGATGAGTCGTTGGTGGAGGCTCGTGATAGCCCCAGTTGGTTTTTCCCTTTTTTGGGAGGTTTGTTTGGTTGTATCTGA

Protein sequence

MLHNSWIDHDVSQSISQPYVDGLYHNLSETHLSHGLWKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSEDISDISGLIDEIRELAMKISIVKIAFSPRSSNLLAHSLARAVAKNSDFVFFPFDPSLCLRMDESLVEARDSPSWFFPFLGGLFGCI

Homology

[Close]

BLAST of Lag0001447 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 99.8 bits (247), Expect = 3.2e-17
Identity = 54/145 (37.24%), Postives = 83/145 (57.24%), Query Frame = 0


Query: 37  WKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAIL 96
           WKPP S  WK+N DAAW    N GG+GWI+R+  G +I A  + I    +I  LE +AI 
Sbjct: 79  WKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAIC 138

Query: 97  EGMRQIYSKR-RTHPELFTREVVIESDAEEIVKLINGDSEDISDISGLIDEIRELAMKIS 156
           EG+R I  +  R   +   R + +ESD+ E + L++   +D ++I  L++EI ++   + 
Sbjct: 139 EGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMK 198

Query: 157 IVKIAFSPRSSNLLAHSLARAVAKN 181
           IV +    R +N +AH LAR   +N
Sbjct: 199 IVSMRHISREANKVAHDLARRAMEN 223

[Close]

BLAST of Lag0001447 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 98.2 bits (243), Expect = 9.4e-17
Identity = 54/144 (37.50%), Postives = 83/144 (57.64%), Query Frame = 0


Query: 37  WKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAIL 96
           WKPP S  WK+N +AAW    N GG+GWI+R+  G +I A  + I    +I  LE +AI 
Sbjct: 79  WKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAIC 138

Query: 97  EGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSEDISDISGLIDEIRELAMKISI 156
           EG+R I   R+ H     R + +ESD+ E + L++   +D ++I  L++EI ++   + I
Sbjct: 139 EGLRAI---RQEH----CRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDMEI 198

Query: 157 VKIAFSPRSSNLLAHSLARAVAKN 181
           V +    R +N +AH LAR   +N
Sbjct: 199 VSMRHISREANKVAHGLARRAMEN 215

[Close]

BLAST of Lag0001447 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 92.8 bits (229), Expect = 3.9e-15
Identity = 50/139 (35.97%), Postives = 81/139 (58.27%), Query Frame = 0


Query: 37  WKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAIL 96
           W+PP    W +N DA+W DS + GG+GWIIR+ +G ++ AG + +    +++LLE+ AIL
Sbjct: 71  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAIL 130

Query: 97  EGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSEDISDISGLIDEIRELAMKISI 156
           EG+R + +     P      + IE+D+ E+  L+N   ED++    +++EI  L     I
Sbjct: 131 EGLRNLTNLGVLRP------LHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEI 190

Query: 157 VKIAFSPRSSNLLAHSLAR 176
           +  A   R +N  AHSLA+
Sbjct: 191 LAFAKVGRETNGCAHSLAQ 203

[Close]

BLAST of Lag0001447 vs. NCBI nr
Match: XP_021808158.1 (uncharacterized protein LOC110751913 [Prunus avium])

HSP 1 Score: 91.7 bits (226), Expect = 8.8e-15
Identity = 54/156 (34.62%), Postives = 87/156 (55.77%), Query Frame = 0


Query: 25  HNLSETHLSHGLWKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRR 84
           H    + ++     PP S+  K+N D AWF  L  GGVGW+IR+S+G L+ AGG+   R 
Sbjct: 65  HQAISSSMAQSWCIPPPSL-LKVNCDVAWFAQLLRGGVGWVIRDSHGLLLCAGGEGDLRG 124

Query: 85  MDIRLLESLAILEGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSEDISDISGLI 144
               L+E LAI   +      + TH       V++ESD +  + ++NG +   SD+ G++
Sbjct: 125 SSALLMELLAIRHALSACAHFQLTH-------VMVESDTQRGISMLNGQATVDSDLEGIV 184

Query: 145 DEIRELAMKISIVKIAFSPRSSNLLAHSLARAVAKN 181
            +I++L    S V   F+P+S N +AH++A  V+K+
Sbjct: 185 FDIQQLVATFSQVSFVFAPKSCNRVAHTVAGFVSKH 212

[Close]

BLAST of Lag0001447 vs. NCBI nr
Match: PNX95372.1 (DNA primase small subunit-like protein, partial [Trifolium pratense])

HSP 1 Score: 87.4 bits (215), Expect = 1.7e-13
Identity = 55/184 (29.89%), Postives = 95/184 (51.63%), Query Frame = 0


Query: 7   IDHDVSQSISQPYVDGLYHNLSETHLSHG----LWKPPDSMQWKMNVDAAWFDSLNVGGV 66
           + H    S+S  + + +    S    S G     W+ P S  WK NVDA+   + +  G 
Sbjct: 222 LHHHNRSSVSSQFCNSVAAGSSSQSNSRGSDMLQWQWPSSGWWKCNVDASLSQNSSYTGW 281

Query: 67  GWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQIYSKRRTHPELFTREVVIESD 126
           GW +R+S+GS + AG  K   R+     E++ ILE +R+ +S+  ++       VV ESD
Sbjct: 282 GWCVRSSDGSFVAAGTNKCLHRLTAAEGEAMTILEAIREAFSRGWSN-------VVFESD 341

Query: 127 AEEIVKLINGDSEDISDISGLIDEIRELAMKISIVKIAFSPRSSNLLAHSLARAVAKNSD 186
           ++ +V  I+ +++ IS++S +I  I+ L       ++ F+ R +N+ AH+LAR     S 
Sbjct: 342 SKVVVDAIHSNTQGISELSSIITSIKLLLQCNLNFEVKFTKRQANMAAHTLARTAISWSS 398

[Close]

BLAST of Lag0001447 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.6e-17
Identity = 54/145 (37.24%), Postives = 83/145 (57.24%), Query Frame = 0


Query: 37  WKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAIL 96
           WKPP S  WK+N DAAW    N GG+GWI+R+  G +I A  + I    +I  LE +AI 
Sbjct: 79  WKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAIC 138

Query: 97  EGMRQIYSKR-RTHPELFTREVVIESDAEEIVKLINGDSEDISDISGLIDEIRELAMKIS 156
           EG+R I  +  R   +   R + +ESD+ E + L++   +D ++I  L++EI ++   + 
Sbjct: 139 EGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDMK 198

Query: 157 IVKIAFSPRSSNLLAHSLARAVAKN 181
           IV +    R +N +AH LAR   +N
Sbjct: 199 IVSMRHISREANKVAHDLARRAMEN 223

[Close]

BLAST of Lag0001447 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.5e-17
Identity = 54/144 (37.50%), Postives = 83/144 (57.64%), Query Frame = 0


Query: 37  WKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAIL 96
           WKPP S  WK+N +AAW    N GG+GWI+R+  G +I A  + I    +I  LE +AI 
Sbjct: 79  WKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAIC 138

Query: 97  EGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSEDISDISGLIDEIRELAMKISI 156
           EG+R I   R+ H     R + +ESD+ E + L++   +D ++I  L++EI ++   + I
Sbjct: 139 EGLRAI---RQEH----CRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDMEI 198

Query: 157 VKIAFSPRSSNLLAHSLARAVAKN 181
           V +    R +N +AH LAR   +N
Sbjct: 199 VSMRHISREANKVAHGLARRAMEN 215

[Close]

BLAST of Lag0001447 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-15
Identity = 50/139 (35.97%), Postives = 81/139 (58.27%), Query Frame = 0


Query: 37  WKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAIL 96
           W+PP    W +N DA+W DS + GG+GWIIR+ +G ++ AG + +    +++LLE+ AIL
Sbjct: 71  WEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWDGDIVLAGNRFVEACNNVKLLEASAIL 130

Query: 97  EGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSEDISDISGLIDEIRELAMKISI 156
           EG+R + +     P      + IE+D+ E+  L+N   ED++    +++EI  L     I
Sbjct: 131 EGLRNLTNLGVLRP------LHIETDSAEVESLLNRKREDLTKTGWVVEEILNLRDSCEI 190

Query: 157 VKIAFSPRSSNLLAHSLAR 176
           +  A   R +N  AHSLA+
Sbjct: 191 LAFAKVGRETNGCAHSLAQ 203

[Close]

BLAST of Lag0001447 vs. ExPASy TrEMBL
Match: A0A6P5S2T0 (uncharacterized protein LOC110751913 OS=Prunus avium OX=42229 GN=LOC110751913 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.2e-15
Identity = 54/156 (34.62%), Postives = 87/156 (55.77%), Query Frame = 0


Query: 25  HNLSETHLSHGLWKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRR 84
           H    + ++     PP S+  K+N D AWF  L  GGVGW+IR+S+G L+ AGG+   R 
Sbjct: 65  HQAISSSMAQSWCIPPPSL-LKVNCDVAWFAQLLRGGVGWVIRDSHGLLLCAGGEGDLRG 124

Query: 85  MDIRLLESLAILEGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSEDISDISGLI 144
               L+E LAI   +      + TH       V++ESD +  + ++NG +   SD+ G++
Sbjct: 125 SSALLMELLAIRHALSACAHFQLTH-------VMVESDTQRGISMLNGQATVDSDLEGIV 184

Query: 145 DEIRELAMKISIVKIAFSPRSSNLLAHSLARAVAKN 181
            +I++L    S V   F+P+S N +AH++A  V+K+
Sbjct: 185 FDIQQLVATFSQVSFVFAPKSCNRVAHTVAGFVSKH 212

[Close]

BLAST of Lag0001447 vs. ExPASy TrEMBL
Match: A0A2Z6N4A7 (RNase H domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_224710 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-13
Identity = 53/155 (34.19%), Postives = 85/155 (54.84%), Query Frame = 0


Query: 36  LWKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAI 95
           +W+ P     K NVDA++  +    G GW +RNSNG  + AG    + ++ I   E++AI
Sbjct: 239 VWQCPRDGWLKCNVDASFSQASGHTGWGWCLRNSNGVFVAAGTNMSTHKLTIVEGEAMAI 298

Query: 96  LEGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSEDISDISGLIDEIRELAMKIS 155
           LE MR+  S+R  +       +V ESD++ +V  I+ + + +S++S +I  IR L     
Sbjct: 299 LEAMREAISRRWFN-------IVFESDSKVVVDAIHANHQGVSELSSIIASIRLLLQCNQ 358

Query: 156 IVKIAFSPRSSNLLAHSLARAVAKNSDFVFFPFDP 191
             +I F+ R +N+ AH+LARA    S   FF + P
Sbjct: 359 NFEIKFTKRQANMAAHTLARAAISWSSRTFFNYVP 386

[Close]

BLAST of Lag0001447 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 63.9 bits (154), Expect = 1.8e-10
Identity = 47/156 (30.13%), Postives = 74/156 (47.44%), Query Frame = 0


Query: 37  WKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAIL 96
           WK P     K N DA W       G+GWI+RN +G ++  G + + R  ++  LE  A L
Sbjct: 137 WKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVLWMGARALPRTKNV--LE--AEL 196

Query: 97  EGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSEDISDISGLIDEIRELAMKISI 156
           E +R       T      + ++ ESDA+ +V L+N D +    +   +++I++L      
Sbjct: 197 EALRWAV---LTMSRFNYKRIIFESDAQALVNLLNSD-DFWPTLQPALEDIQQLLHHFEE 256

Query: 157 VKIAFSPRSSNLLAHSLARAVAKNSDFVFFPFDPSL 193
           VK  F+PR  N +A  +AR         F  +DP L
Sbjct: 257 VKFEFTPRGGNKVADRIAR-----ESISFSNYDPKL 279

[Close]

BLAST of Lag0001447 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 60.1 bits (144), Expect = 2.6e-09
Identity = 41/151 (27.15%), Postives = 70/151 (46.36%), Query Frame = 0


Query: 37  WKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAIL 96
           W PP   + K N DA+  +   V G+GWI+RNS G++I  G  K   RM     E   ++
Sbjct: 105 WSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAECSTLI 164

Query: 97  EGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSEDISDISGLIDEIRELAMKISI 156
             ++  Y           ++V+ E D + I ++IN  S +   +   +D I+        
Sbjct: 165 WAIQASYG-------FGHKKVIFEGDNQTITRMINTKSSN-PRLQHFLDTIQSWIPSFES 224

Query: 157 VKIAFSPRSSNLLAHSLAR-AVAKNSDFVFF 187
           ++ +F  R  N  A  LA+ A+ +N+ +  F
Sbjct: 225 IEFSFKHREQNGCADFLAKQAIKENTQWSLF 247

[Close]

BLAST of Lag0001447 vs. TAIR 10
Match: AT2G13980.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 2.9e-08
Identity = 43/148 (29.05%), Postives = 70/148 (47.30%), Query Frame = 0


Query: 37  WKPPDSMQWKMNVDAAWFDSLNVGGVG-WIIRNSNGSLIGAGGKKISRRMDIRLLESLAI 96
           WK P     K N DA  F+  N+     WIIRN +G     G  ++         E+ A+
Sbjct: 13  WKAPPDTHIKCNYDAG-FNVQNLDSTARWIIRNHDGIAQHWGSLQLDNTSTPLEAETKAL 72

Query: 97  LEGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSEDISDISGLIDEIRELAMKIS 156
           L  ++Q + +           V++E D E +  L++G S   + ++ L+D+IR  A K S
Sbjct: 73  LAALQQTWIRGYL-------RVIMEGDCETLTNLVSGSSSH-NHLANLLDDIRIWAKKFS 132

Query: 157 IVKIAFSPRSSNLLAHSLARAVAKNSDF 184
            V+ +F  R  N +AH LA+    ++ F
Sbjct: 133 NVQFSFVRRGGNKVAHELAKLGCNSTCF 151

[Close]

BLAST of Lag0001447 vs. TAIR 10
Match: AT1G52990.1 (thioredoxin family protein )

HSP 1 Score: 49.7 bits (117), Expect = 3.6e-06
Identity = 40/140 (28.57%), Postives = 66/140 (47.14%), Query Frame = 0


Query: 42  SMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAILEGMRQ 101
           S + K N DA+  +   V G+GW+IRNS G+++  G  K   RM     E  A+      
Sbjct: 45  SCRVKCNYDASHHEGDVVSGLGWLIRNSQGTVLECGMGKFQGRMTPEEAECSAL------ 104

Query: 102 IYSKRRTHPELFTREVVIESDAEEIVKLINGDSEDISDISGLIDEIRELAMKISIVKIAF 161
           I++ + T    +T+ V+ E D   + +LIN  S D   +   +D I+      +  +  F
Sbjct: 105 IWAIQATSAFGYTK-VIFEGDNSNVNRLINTKS-DNPRLKHYLDTIKSWIPSFTSTEFIF 164

Query: 162 SPRSSNLLAHSLARAVAKNS 182
           + R  N  A +L +   K+S
Sbjct: 165 THREQNQCADTLVKKAIKSS 176

[Close]

BLAST of Lag0001447 vs. TAIR 10
Match: AT3G25270.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 43.9 bits (102), Expect = 2.0e-04
Identity = 39/156 (25.00%), Postives = 70/156 (44.87%), Query Frame = 0


Query: 37  WKPPDSMQWKMNVDAAWFDSLNVGGVGWIIRNSNGSLIGAGGKKISRRMDIRLLESLAIL 96
           W+ P S   K N D A+         GW++R+ NG  +G+G    S   D    E  A++
Sbjct: 186 WQRPPSTWIKYNYDGAFNHQTRNAKAGWLMRDENGVYMGSGQAIGSTTSDSLESEFQALI 245

Query: 97  EGMRQIYSKRRTHPELFTREVVIESDAEEIVKLINGDSEDISDISGLIDEIRELAMKISI 156
             M+  +S+         R+V+ E D++++ +L+N +  +    +  I E R    +   
Sbjct: 246 IAMQHAWSQG-------YRKVIFEGDSKQVEELMNNEKLNFGRFN-WIREGRFWQKRFEE 305

Query: 157 VKIAFSPRSSNLLAHSLAR-AVAKNSDFVFFPFDPS 192
               + PR++N  A  LA+  +  N  F F  + P+
Sbjct: 306 AVFKWVPRTNNQPADILAKHHLQPNQSFKFHYYVPA 333

The following BLAST results are available for this feature:

BLAST of Lag0001447 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156777.1	3.2e-17	37.24	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
XP_022143535.1	9.4e-17	37.50	uncharacterized protein LOC111013412 [Momordica charantia]	[more]
XP_022155262.1	3.9e-15	35.97	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_021808158.1	8.8e-15	34.62	uncharacterized protein LOC110751913 [Prunus avium]	[more]
PNX95372.1	1.7e-13	29.89	DNA primase small subunit-like protein, partial [Trifolium pratense]	[more]

BLAST of Lag0001447 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0001447 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DSV1	1.6e-17	37.24	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1CP26	4.5e-17	37.50	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DNV9	1.9e-15	35.97	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6P5S2T0	4.2e-15	34.62	uncharacterized protein LOC110751913 OS=Prunus avium OX=42229 GN=LOC110751913 PE...	[more]
A0A2Z6N4A7	1.4e-13	34.19	RNase H domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_2247...	[more]

BLAST of Lag0001447 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34320.1	1.8e-10	30.13	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G65005.1	2.6e-09	27.15	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT2G13980.1	2.9e-08	29.05	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G52990.1	3.6e-06	28.57	thioredoxin family protein	[more]
AT3G25270.1	2.0e-04	25.00	Ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 48..176 e-value: 2.2E-20 score: 72.7
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 43..179 e-value: 4.3E-13 score: 51.4
None	No IPR available	PANTHER	PTHR33033	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 34..181
None	No IPR available	PANTHER	PTHR33033:SF67	SUBFAMILY NOT NAMED	coord: 34..181
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 48..175 e-value: 4.37593E-23 score: 88.14
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 45..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001447.1	Lag0001447.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity
molecular_function	GO:0016740	transferase activity