Lag0001404 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001404
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Transposon TX1 uncharacterized 149 kDa protein
Location	chr4: 30853452 .. 30854262 (+)
RNA-Seq Expression	Lag0001404
Synteny	Lag0001404

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGGGAACGAAGAAGTCGAATGCCTAGGTCAAAACCGAAAAGATAAGATGGCCATAGTAGTTAGCGATTCTCAAGAACCTCTGATAGAAGCAAATCCGATTAATACTGAAGAGGATGATAGAAGGGAACCCTCGAGTCCTTGTGGATCTGGGCAGAAATCTGGTAGTGTAGAATCAGGGTCAAAGCTCGCAGTTCCGATATTAAGGGAAACGATAGAAATCCTGTGGCAAAATGGGCTCTGTATTAGGCCAATTCCAAAGAAGATAGAAGGTGGGGGCGAGCAAAGGCAAAAGTAAGAAAAATCCGATGAAAAGGGAGATAAAAGGGCTTATAAATACTTGGGAAAAACCGATGGAGAATTTTATTTCCCCATCTCAGGGTTGCGACGTTGCTCAATGAAGATTCTCTCATGGAATGTCAGGGGGTTGGGGGATGCAGATAAAAGAAGATTGGTTAAGGAGTTAGTTAGGAGTAGCGGCCCAGATATTGTGCTTATTCAGGAGTCTAAATTGGGTTTTGTTCATAGGCACATTGTCAAGCAAGTGTGGAGCTCTCGTTTTATAGGCTGGTCTTCCCTTAATTCTGAAGGGTCTTCAGGTGGGATTCTGGTGTTGTGGAAGGAGAAAGAGGTCAAGGCAATGGATGTGGTTGTGGGGAGTTTCACAGTGTCTGTCCTGTTTCAGCTTGAGAACGCCAAGAAATGCTGGATTACCGCCGTGTATGGTCCTAGTAGATATAAAGAAAGACCTTTGTTTTGGCGTGAGTTATATGATCTGAATGGCTTATGCAGCAGGGCTTGGTGTCTAG

mRNA sequence

ATGTTTGGGAACGAAGAAGTCGAATGCCTAGGTCAAAACCGAAAAGATAAGATGGCCATAGTAGTTAGCGATTCTCAAGAACCTCTGATAGAAGCAAATCCGATTAATACTGAAGAGGATGATAGAAGGGAACCCTCGAGTCCTTGTGGATCTGGGCAGAAATCTGGTAGTGTAGAATCAGGGTCAAAGCTCGCAGTTCCGATATTAAGGGAAACGATAGAAATCCTGTGGCAAAATGGGCTCTGTATTAGGCCAATTCCAAAGAAGATAGAAGGTGGGGGCGAGCAAAGGCAAAAGGGGTTGGGGGATGCAGATAAAAGAAGATTGGTTAAGGAGTTAGTTAGGAGTAGCGGCCCAGATATTGTGCTTATTCAGGAGTCTAAATTGGGTTTTGTTCATAGGCACATTGTCAAGCAAGTGTGGAGCTCTCGTTTTATAGGCTGGTCTTCCCTTAATTCTGAAGGGTCTTCAGGTGGGATTCTGGTGTTGTGGAAGGAGAAAGAGGTCAAGGCAATGGATGTGGTTGTGGGGAGTTTCACAGTGTCTGTCCTGTTTCAGCTTGAGAACGCCAAGAAATGCTGGATTACCGCCGTGTATGCAGGGCTTGGTGTCTAG

Coding sequence (CDS)

ATGTTTGGGAACGAAGAAGTCGAATGCCTAGGTCAAAACCGAAAAGATAAGATGGCCATAGTAGTTAGCGATTCTCAAGAACCTCTGATAGAAGCAAATCCGATTAATACTGAAGAGGATGATAGAAGGGAACCCTCGAGTCCTTGTGGATCTGGGCAGAAATCTGGTAGTGTAGAATCAGGGTCAAAGCTCGCAGTTCCGATATTAAGGGAAACGATAGAAATCCTGTGGCAAAATGGGCTCTGTATTAGGCCAATTCCAAAGAAGATAGAAGGTGGGGGCGAGCAAAGGCAAAAGGGGTTGGGGGATGCAGATAAAAGAAGATTGGTTAAGGAGTTAGTTAGGAGTAGCGGCCCAGATATTGTGCTTATTCAGGAGTCTAAATTGGGTTTTGTTCATAGGCACATTGTCAAGCAAGTGTGGAGCTCTCGTTTTATAGGCTGGTCTTCCCTTAATTCTGAAGGGTCTTCAGGTGGGATTCTGGTGTTGTGGAAGGAGAAAGAGGTCAAGGCAATGGATGTGGTTGTGGGGAGTTTCACAGTGTCTGTCCTGTTTCAGCTTGAGAACGCCAAGAAATGCTGGATTACCGCCGTGTATGCAGGGCTTGGTGTCTAG

Protein sequence

MFGNEEVECLGQNRKDKMAIVVSDSQEPLIEANPINTEEDDRREPSSPCGSGQKSGSVESGSKLAVPILRETIEILWQNGLCIRPIPKKIEGGGEQRQKGLGDADKRRLVKELVRSSGPDIVLIQESKLGFVHRHIVKQVWSSRFIGWSSLNSEGSSGGILVLWKEKEVKAMDVVVGSFTVSVLFQLENAKKCWITAVYAGLGV

Homology

[Close]

BLAST of Lag0001404 vs. NCBI nr
Match: RVX04307.1 (Beta-arabinofuranosyltransferase RAY1 [Vitis vinifera])

HSP 1 Score: 103.2 bits (256), Expect = 2.7e-18
Identity = 46/101 (45.54%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 99  KGLGDADKRRLVKELVRSSGPDIVLIQESKLGFVHRHIVKQVWSSRFIGWSSLNSEGSSG 158
           +GLG  +KRR+VK+ +RS  PD+V+IQE+K     R  V  VW++R   W +L + G+SG
Sbjct: 59  RGLGSRNKRRMVKDFLRSENPDVVMIQETKKEICDRRFVGSVWTARNKDWVALPASGASG 118

Query: 159 GILVLWKEKEVKAMDVVVGSFTVSVLFQLENAKKCWITAVY 200
           GIL++W  K ++  +VV+GSF++SV F L+     WI+AVY
Sbjct: 119 GILIIWDSKNLRREEVVLGSFSISVKFSLDGCGPLWISAVY 159

[Close]

BLAST of Lag0001404 vs. NCBI nr
Match: RVW46837.1 (hypothetical protein CK203_075659 [Vitis vinifera])

HSP 1 Score: 102.8 bits (255), Expect = 3.5e-18
Identity = 46/102 (45.10%), Postives = 71/102 (69.61%), Query Frame = 0


Query: 99  KGLGDADKRRLVKELVRSSGPDIVLIQESKLGFVHRHIVKQVWSSRFIGWSSLNSEGSSG 158
           KGLG   KRR+VK+ +RS  PD+V+IQE+K     R  V  VW++R   W++L + G+SG
Sbjct: 169 KGLGSKKKRRVVKDFLRSEKPDVVMIQETKKAECDRRFVGSVWTTRSKDWAALPASGASG 228

Query: 159 GILVLWKEKEVKAMDVVVGSFTVSVLFQLENAKKCWITAVYA 201
           GIL++W  K++   +VV+GSF+VS+ F L+  +  W++AVY+
Sbjct: 229 GILIIWDSKKLCREEVVLGSFSVSIKFTLDGCESLWLSAVYS 270

[Close]

BLAST of Lag0001404 vs. NCBI nr
Match: RVX11280.1 (LINE-1 retrotransposable element ORF2 protein [Vitis vinifera])

HSP 1 Score: 102.1 bits (253), Expect = 6.0e-18
Identity = 47/101 (46.53%), Postives = 68/101 (67.33%), Query Frame = 0


Query: 99  KGLGDADKRRLVKELVRSSGPDIVLIQESKLGFVHRHIVKQVWSSRFIGWSSLNSEGSSG 158
           +GLG  +KRR+VK+ +RS  PD+V+IQE+K     R  V  VW+ R   W +L + G+SG
Sbjct: 183 RGLGSRNKRRMVKDFLRSENPDVVMIQETKKENCDRRFVGSVWTVRNKDWVALPASGASG 242

Query: 159 GILVLWKEKEVKAMDVVVGSFTVSVLFQLENAKKCWITAVY 200
           GIL++W  K ++  +VV+GSF+VSV F L+     WI+AVY
Sbjct: 243 GILIIWDSKNLRREEVVIGSFSVSVKFSLDGCGPLWISAVY 283

[Close]

BLAST of Lag0001404 vs. NCBI nr
Match: RVW13148.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 102.1 bits (253), Expect = 6.0e-18
Identity = 47/101 (46.53%), Postives = 68/101 (67.33%), Query Frame = 0


Query: 99  KGLGDADKRRLVKELVRSSGPDIVLIQESKLGFVHRHIVKQVWSSRFIGWSSLNSEGSSG 158
           +GLG  +KRR+VK+ +RS  PD+V+IQE+K     R  V  VW+ R   W +L + G+SG
Sbjct: 755 RGLGSRNKRRMVKDFLRSENPDVVMIQETKKENCDRRFVGSVWTVRNKDWVALPASGASG 814

Query: 159 GILVLWKEKEVKAMDVVVGSFTVSVLFQLENAKKCWITAVY 200
           GIL++W  K ++  +VV+GSF+VSV F L+     WI+AVY
Sbjct: 815 GILIIWDSKNLRREEVVIGSFSVSVKFSLDGCGPLWISAVY 855

[Close]

BLAST of Lag0001404 vs. NCBI nr
Match: XP_034710512.1 (uncharacterized protein LOC117933236 [Vitis riparia])

HSP 1 Score: 102.1 bits (253), Expect = 6.0e-18
Identity = 46/102 (45.10%), Postives = 73/102 (71.57%), Query Frame = 0


Query: 99  KGLGDADKRRLVKELVRSSGPDIVLIQESKLGFVHRHIVKQVWSSRFIGWSSLNSEGSSG 158
           +GLG   KRR+VK+ +RS  PD+V+IQE+K     R +V  VWS+R   W++L + G+SG
Sbjct: 9   RGLGSKKKRRVVKDFLRSEKPDVVMIQETKKEECDRRLVGSVWSARNKDWAALPASGASG 68

Query: 159 GILVLWKEKEVKAMDVVVGSFTVSVLFQLENAKKCWITAVYA 201
           GILV+W  K+++  +VV+GSF+VS+ F L+  +  W++AV++
Sbjct: 69  GILVIWDSKKLRREEVVLGSFSVSIKFVLDGRESLWLSAVHS 110

[Close]

BLAST of Lag0001404 vs. ExPASy TrEMBL
Match: A0A438J5R7 (Beta-arabinofuranosyltransferase RAY1 OS=Vitis vinifera OX=29760 GN=RAY1_1 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.3e-18
Identity = 46/101 (45.54%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 99  KGLGDADKRRLVKELVRSSGPDIVLIQESKLGFVHRHIVKQVWSSRFIGWSSLNSEGSSG 158
           +GLG  +KRR+VK+ +RS  PD+V+IQE+K     R  V  VW++R   W +L + G+SG
Sbjct: 59  RGLGSRNKRRMVKDFLRSENPDVVMIQETKKEICDRRFVGSVWTARNKDWVALPASGASG 118

Query: 159 GILVLWKEKEVKAMDVVVGSFTVSVLFQLENAKKCWITAVY 200
           GIL++W  K ++  +VV+GSF++SV F L+     WI+AVY
Sbjct: 119 GILIIWDSKNLRREEVVLGSFSISVKFSLDGCGPLWISAVY 159

[Close]

BLAST of Lag0001404 vs. ExPASy TrEMBL
Match: A0A438EGI8 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_075659 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.7e-18
Identity = 46/102 (45.10%), Postives = 71/102 (69.61%), Query Frame = 0


Query: 99  KGLGDADKRRLVKELVRSSGPDIVLIQESKLGFVHRHIVKQVWSSRFIGWSSLNSEGSSG 158
           KGLG   KRR+VK+ +RS  PD+V+IQE+K     R  V  VW++R   W++L + G+SG
Sbjct: 169 KGLGSKKKRRVVKDFLRSEKPDVVMIQETKKAECDRRFVGSVWTTRSKDWAALPASGASG 228

Query: 159 GILVLWKEKEVKAMDVVVGSFTVSVLFQLENAKKCWITAVYA 201
           GIL++W  K++   +VV+GSF+VS+ F L+  +  W++AVY+
Sbjct: 229 GILIIWDSKKLCREEVVLGSFSVSIKFTLDGCESLWLSAVYS 270

[Close]

BLAST of Lag0001404 vs. ExPASy TrEMBL
Match: A0A438BQB2 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_783 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.9e-18
Identity = 47/101 (46.53%), Postives = 68/101 (67.33%), Query Frame = 0


Query: 99  KGLGDADKRRLVKELVRSSGPDIVLIQESKLGFVHRHIVKQVWSSRFIGWSSLNSEGSSG 158
           +GLG  +KRR+VK+ +RS  PD+V+IQE+K     R  V  VW+ R   W +L + G+SG
Sbjct: 755 RGLGSRNKRRMVKDFLRSENPDVVMIQETKKENCDRRFVGSVWTVRNKDWVALPASGASG 814

Query: 159 GILVLWKEKEVKAMDVVVGSFTVSVLFQLENAKKCWITAVY 200
           GIL++W  K ++  +VV+GSF+VSV F L+     WI+AVY
Sbjct: 815 GILIIWDSKNLRREEVVIGSFSVSVKFSLDGCGPLWISAVY 855

[Close]

BLAST of Lag0001404 vs. ExPASy TrEMBL
Match: A0A438GS66 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_053703 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.9e-18
Identity = 49/123 (39.84%), Postives = 79/123 (64.23%), Query Frame = 0


Query: 80  GLCIRPIPKKIEGGGEQRQ---KGLGDADKRRLVKELVRSSGPDIVLIQESKLGFVHRHI 139
           G+   P+P+      E  Q   +GLG   KRR+VK+ + S  PD+V+IQE+K     R +
Sbjct: 19  GMPSSPVPEGQSVSHEDNQLEYQGLGSKKKRRVVKDFLSSEKPDVVMIQETKKEECDRRL 78

Query: 140 VKQVWSSRFIGWSSLNSEGSSGGILVLWKEKEVKAMDVVVGSFTVSVLFQLENAKKCWIT 199
           V  VWS+R   W++L + G+SGGIL++W  K+++  +VV+GSF+VS+ F ++  +  W++
Sbjct: 79  VGSVWSARNKEWAALPASGASGGILIIWDSKKLRREEVVLGSFSVSIKFAIDGRESLWLS 138

[Close]

BLAST of Lag0001404 vs. ExPASy TrEMBL
Match: A5AJR1 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_031160 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.9e-18
Identity = 47/101 (46.53%), Postives = 68/101 (67.33%), Query Frame = 0


Query: 99  KGLGDADKRRLVKELVRSSGPDIVLIQESKLGFVHRHIVKQVWSSRFIGWSSLNSEGSSG 158
           +GLG  +KRR+VK+ +RS  PD+V+IQE+K     R  V  VW+ R   W +L + G+SG
Sbjct: 676 RGLGSRNKRRMVKDFLRSENPDVVMIQETKKENCDRRFVGSVWTVRNKDWVALPASGASG 735

Query: 159 GILVLWKEKEVKAMDVVVGSFTVSVLFQLENAKKCWITAVY 200
           GIL++W  K ++  +VV+GSF+VSV F L+     WI+AVY
Sbjct: 736 GILIIWDSKNLRREEVVIGSFSVSVKFSLDGCGPLWISAVY 776

The following BLAST results are available for this feature:

BLAST of Lag0001404 vs. NCBI nr


Match Name	E-value	Identity	Description
RVX04307.1	2.7e-18	45.54	Beta-arabinofuranosyltransferase RAY1 [Vitis vinifera]	[more]
RVW46837.1	3.5e-18	45.10	hypothetical protein CK203_075659 [Vitis vinifera]	[more]
RVX11280.1	6.0e-18	46.53	LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]	[more]
RVW13148.1	6.0e-18	46.53	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]
XP_034710512.1	6.0e-18	45.10	uncharacterized protein LOC117933236 [Vitis riparia]	[more]

BLAST of Lag0001404 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0001404 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438J5R7	1.3e-18	45.54	Beta-arabinofuranosyltransferase RAY1 OS=Vitis vinifera OX=29760 GN=RAY1_1 PE=4 ...	[more]
A0A438EGI8	1.7e-18	45.10	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_075659 PE=4 SV=1	[more]
A0A438BQB2	2.9e-18	46.53	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]
A0A438GS66	2.9e-18	39.84	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_053703 PE=4 SV=1	[more]
A5AJR1	2.9e-18	46.53	Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI...	[more]

BLAST of Lag0001404 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 98..202 e-value: 5.9E-6 score: 28.2
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 104..200
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..59
None	No IPR available	PANTHER	PTHR22748:SF11	DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE CHLOROPLASTIC	coord: 99..201
IPR004808	AP endonuclease 1	PANTHER	PTHR22748	AP ENDONUCLEASE	coord: 99..201
IPR020847	AP endonuclease 1, binding site	PROSITE	PS00726	AP_NUCLEASE_F1_1	coord: 119..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001404.1	Lag0001404.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0004518	nuclease activity