Lag0001394 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001394
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ribonuclease H
Location	chr4: 30738933 .. 30741684 (-)
RNA-Seq Expression	Lag0001394
Synteny	Lag0001394

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTCGAGTGCCGATAGAAGAGACACGAGCCAGTATTGTCTTTTCCACCGGGACCACGGGCATTCAACCAGGAATTGTATTCAGTTGAAGGATGAAATCGAAGCACTAATCCAGAATGGGTATTTGAAAGAGTTCGTCGGTGAGCCTAGGGCCGAGGCCGACCACGGATGGCCGAGGCCGAGCCTCACCAAAGATGGCCGAGACAAAGAAGAACCCCTACGGAGATCAGAATCATCTTTGGAGGACCAGCTGAAGGAGGTTCGAGTAGGAAGAGGAAAGCTATTGCCAGGGAAGCGGGGTTGAACCAGAATATCGAGGTATGTATTATGTCTATCTATCAAAGGCACACCCCCCTTTGGAGTTCACTGAGGCTGAGGCACGAGCATTCATCAGCCACATAATGATGCTCTGGTGGTCACTCTAATTGTAGCCAATGTGAAAATCCTTCGGATCCTAATTGATGGAGGAAGCTCGGCTGATGTCCTTTCTCTAACAGCCTTTAAAGCAATGCGGTTAGGGAGGGAACTCTTAAAGCCAAGCCTTACCAACTTGTAGGATTTGGGGGAGAGAGAGTGACCCCAGAAGGTAGCATAGAACTTCCTGTGACCTTTGGGGATGGACAGAATGTAGTGACAAAGATGATAAACTTCCTAGTTGTGGATTGTATGTCAGCCTACAATGCAATCCTAGGAAGACCAACCTTGCATGAGATGAAGGCCATAGCTTCAACTTACCATCAGTTACTGAAGTTTCCAACTCCGGAACGGTGTGGGAGTCGTCAAGGGAGAGCAGAAGGAATCGAGGGAGTGTTACTGGACCGCACTAAAAGCTATCAAGCCACAGAGGGCCGAGGCCGACCCAGAGAATGAGCCAGGCTGAGCAGCACACACTTCCACCAACACTGAATCTGAACTTATGGAGTTTTAGGGTTTTTCGTTTATTGCATTCTATCATGTAATTAGACATTGTTTACTTTGTTTCTGCCTCTAGTATAGGTTAAGTATTTTTTTTCATTCAAAGTGTGAAAGTTTAATTAATAGCCTTACAGTTTCACCATTAAAGTTCAGTATTCAGGAGTGTGCACAAGGCAACCGACTCAAGCATCAAGACATGCGAGCCTGGACTATCGAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGCCTGAGCATCTTTACACCAGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACTTCCTCTGGCCTGAGCATCTTTACTCCAGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGCCTGAGCATCTTTACACCAGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGCCTGAGCATCTTTACTCCAGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATATGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGCCTGAGCATCTTACACCAGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGCGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGCCTGAGCATCTTACACCAGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTTCTCTGGCCTGAGCATCTTTACACTAGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGCCTGAGCATCCTTACATCAGGCGAGCCTGGACTGCCGAGTCTACCTCGCCTCATCCAAAGTGAGACCATGTGAGCTTGGACCAACGAGTCTACCTCACCTCACCTGGCATGAGTCCATACACTTCATCTAAGTCAAGCTCACCCTACAGAAGTCGGGACCGAGCACCTCTTGCCAAGGCCGAGCACCTCTTGCCGAGGCCAAGCACAAACTTTAAAGGTATTCTCCTATTTCCTCAACTATATTTATGTTTCGGTGAAGTTCTACTTAAGATTGGGGGCTATAGAGGGGATATGCACTCCCTATTAAACAAAAAGCAAGTAACCGGGGATATGCACTCCCTATTAAACAAAAACACCTATGTTTAGCATGTTCTACTAAAATTTACATGTTCAAACCTATTCTCTTATTATTTTCCTACAAGGACTGATATGTGGATGCAGGGAACCAAATTTTAGGCTAACGAGGGCTTGAGGCCGAGGCTGATCCTAGCCTTTTCCCTAACTTTTCTCTTGCAGACATGAACCTGAAATGAAGCACTCCGAATGACCCAGTACGGGGCAGAGGTCGAGCCCGACCAGCACCACTTTTGTAATCTCTCACCCTTTTTCATTTCCATTTCATCTAACCCCTATTCATGGAGTATCTACTTCTATCCTACTTTGCAGGATGACAACAAAGCTACACATAAGCCAGCCCAAGGCAAGGGTCATTACTCTTAAATCGGGCTTAAGGAGCTCAACTTATAGCAATAAGTCACCTCGAATCCCAATTCAAGAGTGGGGCTTAATGGCTTAA

mRNA sequence

ATGAAGTCGAGTGCCGATAGAAGAGACACGAGCCAGTATTGTCTTTTCCACCGGGACCACGGGCATTCAACCAGGAATTGTATTCAGTTGAAGGATGAAATCGAAGCACTAATCCAGAATGGGTATTTGAAAGAGTTCGTCGGTGAGCCTAGGGCCGAGGCCGACCACGGATGGCCGAGGCCGAGCCTCACCAAAGATGGCCGAGACAAAGAAGAACCCCTACGGAGATCAGAATCATCTTTGGAGGACCAGCTGAAGGAGGTTCGAGTAGGAAGAGGAAAGCTATTGCCAGGGAAGCGGGGATTTGGGGGAGAGAGAGTGACCCCAGAAGGTAGCATAGAACTTCCTGTGACCTTTGGGGATGGACAGAATGTAGTGACAAAGATGATAAACTTCCTAGTTGTGGATTGTATGTCAGCCTACAATGCAATCCTAGGAAGACCAACCTTGCATGAGATGAAGGCCATAGCTTCAACTTACCATCAGTTACTGAAGTTTCCAACTCCGGAACGTTTCACCATTAAAGTTCAGTATTCAGGAGTGTGCACAAGGCAACCGACTCAAGCATCAAGACATGCGAGCCTGGACTATCGAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGCCTGAGCATCTTTACACCAGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACTTCCTCTGGCCTGAGCATCTTTACTCCAGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGCCTGAGCATCTTTACACCAGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGCCTGAGCATCTTTACTCCAGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATATGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGCCTGAGCATCTTACACCAGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGCGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGCCTGAGCATCTTACACCAGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGCCTGAGCATCCTTACATCAGGCGAGCCTGGACTGCCGAGTCTACCTCGCCTCATCCAAAGATGACAACAAAGCTACACATAAGCCAGCCCAAGGCAAGGGTCATTACTCTTAAATCGGGCTTAAGGAGCTCAACTTATAGCAATAAGTCACCTCGAATCCCAATTCAAGAGTGGGGCTTAATGGCTTAA

Coding sequence (CDS)

ATGAAGTCGAGTGCCGATAGAAGAGACACGAGCCAGTATTGTCTTTTCCACCGGGACCACGGGCATTCAACCAGGAATTGTATTCAGTTGAAGGATGAAATCGAAGCACTAATCCAGAATGGGTATTTGAAAGAGTTCGTCGGTGAGCCTAGGGCCGAGGCCGACCACGGATGGCCGAGGCCGAGCCTCACCAAAGATGGCCGAGACAAAGAAGAACCCCTACGGAGATCAGAATCATCTTTGGAGGACCAGCTGAAGGAGGTTCGAGTAGGAAGAGGAAAGCTATTGCCAGGGAAGCGGGGATTTGGGGGAGAGAGAGTGACCCCAGAAGGTAGCATAGAACTTCCTGTGACCTTTGGGGATGGACAGAATGTAGTGACAAAGATGATAAACTTCCTAGTTGTGGATTGTATGTCAGCCTACAATGCAATCCTAGGAAGACCAACCTTGCATGAGATGAAGGCCATAGCTTCAACTTACCATCAGTTACTGAAGTTTCCAACTCCGGAACGTTTCACCATTAAAGTTCAGTATTCAGGAGTGTGCACAAGGCAACCGACTCAAGCATCAAGACATGCGAGCCTGGACTATCGAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGCCTGAGCATCTTTACACCAGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACTTCCTCTGGCCTGAGCATCTTTACTCCAGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGCCTGAGCATCTTTACACCAGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGCCTGAGCATCTTTACTCCAGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATATGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGCCTGAGCATCTTACACCAGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGCGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGCCTGAGCATCTTACACCAGGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGCGAGCCTGGACTGCCGAAGTCTACCTCGCCTCATCCAGAGTGAGACCATGTGAGCCTGGACCAACGAGTCTACCTCACCTCCTCTGGCCTGAGCATCCTTACATCAGGCGAGCCTGGACTGCCGAGTCTACCTCGCCTCATCCAAAGATGACAACAAAGCTACACATAAGCCAGCCCAAGGCAAGGGTCATTACTCTTAAATCGGGCTTAAGGAGCTCAACTTATAGCAATAAGTCACCTCGAATCCCAATTCAAGAGTGGGGCTTAATGGCTTAA

Protein sequence

MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFVGEPRAEADHGWPRPSLTKDGRDKEEPLRRSESSLEDQLKEVRVGRGKLLPGKRGFGGERVTPEGSIELPVTFGDGQNVVTKMINFLVVDCMSAYNAILGRPTLHEMKAIASTYHQLLKFPTPERFTIKVQYSGVCTRQPTQASRHASLDYRVYLASSRVRPCEPGPTSLPHLLWPEHLYTRRAWTAEVYLASSRVRPCEPGPTSLPHFLWPEHLYSRRAWTAEVYLASSRVRPCEPGPTSLPHLLWPEHLYTRRAWTAEVYLASSRVRPCEPGPTSLPHLLWPEHLYSRRAWTAEVYLASSRVRPYEPGPTSLPHLLWPEHLTPGEPGLPKSTSPHPECDHVSLDQRVYLTSSGLSILHQASLDCRSLPRLIQSETMRAWTAEVYLASSRVRPCEPGPTSLPHLLWPEHPYIRRAWTAESTSPHPKMTTKLHISQPKARVITLKSGLRSSTYSNKSPRIPIQEWGLMA

Homology

[Close]

BLAST of Lag0001394 vs. NCBI nr
Match: XP_022144467.1 (uncharacterized protein LOC111014147 [Momordica charantia])

HSP 1 Score: 155.2 bits (391), Expect = 1.5e-33
Identity = 92/209 (44.02%), Postives = 125/209 (59.81%), Query Frame = 0


Query: 1   MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFVGEPRA----EADH 60
           MK+ + +R  S+YCLFHR HGH+T++C  LK+E+E LI+ GYLKE+V EP+A    E+D 
Sbjct: 15  MKAPSAKRSKSRYCLFHRYHGHATQDCFDLKEEVEGLIRRGYLKEYVEEPKATQNGESDK 74

Query: 61  GWPR--------PSLTKDGRDKEEPLRRSESSLE-DQLKEVRVGR-----GKLLP----- 120
              R        P   + GR ++  +R + +  E +++  V+V R     G L       
Sbjct: 75  SPAREIRTIMGGPIERESGRKRKADVREARTGREQNEIANVKVHRVLVDGGSLADILSWT 134

Query: 121 -------GKR----------GFGGERVTPEGSIELPVTFGDGQNVVTKMINFLVVDCMSA 170
                  G++          GFGGERV PEG IE PVTFG G   VTKM++ LVV+  S+
Sbjct: 135 AYKAMDLGEKVLKSSPAPLVGFGGERVIPEGRIEXPVTFGSGPKSVTKMVDXLVVNYTSS 194

[Close]

BLAST of Lag0001394 vs. NCBI nr
Match: XP_022150858.1 (uncharacterized protein LOC111018902 [Momordica charantia])

HSP 1 Score: 137.1 bits (344), Expect = 4.2e-28
Identity = 83/213 (38.97%), Postives = 113/213 (53.05%), Query Frame = 0


Query: 1   MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFVGEPRAEADHGWPR 60
           MK+   +R   +YC FH DH H+T++C  LK+E+E LIQ GYLKE+V +P+A  +    +
Sbjct: 23  MKAPPSKRGKGRYCPFHLDHSHATQDCFDLKEEVEGLIQRGYLKEYVKDPKATQNKRERQ 82

Query: 61  PSLTKDGRDKEEPLRRSESSLEDQLKEV------------RVGRGK-------------- 120
                    +E+P +     LED++  +            ++   K              
Sbjct: 83  AYKIYHAFVEEQPTK--IEFLEDEVTHIFHPHNDALVINLKIANAKVHWILVDGGSSPDI 142

Query: 121 --------LLPGKR----------GFGGERVTPEGSIELPVTFGDGQNVVTKMINFLVVD 170
                   +  G+R          GFGGE V PEG IELPVTFG G   +TKM++FLVVD
Sbjct: 143 ISLTAYKTMDLGERGLKSSPAPLVGFGGEWVIPEGRIELPVTFGSGPKSITKMVDFLVVD 202

[Close]

BLAST of Lag0001394 vs. NCBI nr
Match: XP_022155873.1 (uncharacterized protein LOC111022886 [Momordica charantia])

HSP 1 Score: 134.8 bits (338), Expect = 2.1e-27
Identity = 83/223 (37.22%), Postives = 111/223 (49.78%), Query Frame = 0


Query: 1   MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFVGEPRAEADHGWPR 60
           MK+   +R   QY LFHRDHGH+T++C  LK+E+E LI++GYLKE+V +P+A        
Sbjct: 31  MKAPPSKRSKGQYWLFHRDHGHATQDCFDLKEEVEGLIRSGYLKEYVEDPKA-------- 90

Query: 61  PSLTKDG-RDKEEPLRRSESSLEDQ---------------------------LKEVRVGR 120
              T++G  D   P+R   + +E+Q                           +   +V R
Sbjct: 91  ---TQNGENDSNSPVREIRTIMEEQPAKLEFSEDEATHLFHPHNDALVITLKIANAKVHR 150

Query: 121 GKLLPGKR---------------------------GFGGERVTPEGSIELPVTFGDGQNV 169
             +  G                             GFGGERV PEG IELPV FG G   
Sbjct: 151 ILVDGGSSTYIISLTAYKAMDLGEKALKSSPVPLVGFGGERVIPEGRIELPVMFGSGPKS 210

[Close]

BLAST of Lag0001394 vs. NCBI nr
Match: XP_022156748.1 (uncharacterized protein LOC111023587 [Momordica charantia])

HSP 1 Score: 133.7 bits (335), Expect = 4.7e-27
Identity = 88/215 (40.93%), Postives = 114/215 (53.02%), Query Frame = 0


Query: 1   MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKE---------FVGEPR 60
           MK+ + +R   +YCLFHRDH H+T++C  LK+E+E LI+ GYLKE          V E R
Sbjct: 28  MKAPSTKRSKGRYCLFHRDHDHATQDCFDLKEEVEGLIRRGYLKEERIWEKKKADVREAR 87

Query: 61  A-----EADHGW--PRPSLTKDGRDKEEPLRRSESS---LEDQLKEVRVGR--------- 120
           A     E  H +   RP   +   D+   L  S +    +  ++  V+V R         
Sbjct: 88  ANREQNEVYHAYITDRPVTIEFSEDEATQLFHSHNDALVITLKIANVKVHRILVDGGSSA 147

Query: 121 --------------GKLLPGKR----GFGGERVTPEGSIELPVTFGDGQNVVTKMINFLV 170
                          K+L        GFGGERV  EG IELPVTFG G   VTKM++FLV
Sbjct: 148 DIISWTAYKAMDLEEKVLKSSPAPLVGFGGERVISEGRIELPVTFGSGPKGVTKMVDFLV 207

[Close]

BLAST of Lag0001394 vs. NCBI nr
Match: GFS31826.1 (hypothetical protein Acr_00g0019390 [Actinidia rufa])

HSP 1 Score: 130.2 bits (326), Expect = 5.2e-26
Identity = 79/200 (39.50%), Postives = 109/200 (54.50%), Query Frame = 0


Query: 1   MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFV--GEPRAEADHG- 60
           M+S  ++R  +++C FH+DHGH T +C  LK ++E LI+ G L  F+  G P  + DH  
Sbjct: 474 MRSPPEKRPKNKWCRFHQDHGHETEDCYDLKQQVENLIKQGRLGRFIAWGRPDKKRDHSP 533

Query: 61  --WPRPSLTKDGRDKEEPL-------------RRSESSLEDQLKEVRVGRGKLLPGKR-- 120
               R SL K+ +  ++P+               S  S +   +E+R  +  +  G+   
Sbjct: 534 QRVERRSLEKE-KGNQQPIGEIKVISGGFAGGGESSCSRKKHAREIRNQKEVMSIGQSAK 593

Query: 121 ----------GFGGERVTPEGSIELPVTFGDGQNVVTKMINFLVVDCMSAYNAILGRPTL 171
                     GF G+RVTP GSI LPVT GD     TKM+ FLVVDC SAYN I+GR  L
Sbjct: 594 RPRPVHSLLVGFTGDRVTPLGSIALPVTLGDAPRQTTKMVTFLVVDCPSAYNIIVGRTAL 653

[Close]

BLAST of Lag0001394 vs. ExPASy TrEMBL
Match: A0A6J1CTS4 (uncharacterized protein LOC111014147 OS=Momordica charantia OX=3673 GN=LOC111014147 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 7.3e-34
Identity = 92/209 (44.02%), Postives = 125/209 (59.81%), Query Frame = 0


Query: 1   MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFVGEPRA----EADH 60
           MK+ + +R  S+YCLFHR HGH+T++C  LK+E+E LI+ GYLKE+V EP+A    E+D 
Sbjct: 15  MKAPSAKRSKSRYCLFHRYHGHATQDCFDLKEEVEGLIRRGYLKEYVEEPKATQNGESDK 74

Query: 61  GWPR--------PSLTKDGRDKEEPLRRSESSLE-DQLKEVRVGR-----GKLLP----- 120
              R        P   + GR ++  +R + +  E +++  V+V R     G L       
Sbjct: 75  SPAREIRTIMGGPIERESGRKRKADVREARTGREQNEIANVKVHRVLVDGGSLADILSWT 134

Query: 121 -------GKR----------GFGGERVTPEGSIELPVTFGDGQNVVTKMINFLVVDCMSA 170
                  G++          GFGGERV PEG IE PVTFG G   VTKM++ LVV+  S+
Sbjct: 135 AYKAMDLGEKVLKSSPAPLVGFGGERVIPEGRIEXPVTFGSGPKSVTKMVDXLVVNYTSS 194

[Close]

BLAST of Lag0001394 vs. ExPASy TrEMBL
Match: A0A6J1DAK4 (uncharacterized protein LOC111018902 OS=Momordica charantia OX=3673 GN=LOC111018902 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.1e-28
Identity = 83/213 (38.97%), Postives = 113/213 (53.05%), Query Frame = 0


Query: 1   MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFVGEPRAEADHGWPR 60
           MK+   +R   +YC FH DH H+T++C  LK+E+E LIQ GYLKE+V +P+A  +    +
Sbjct: 23  MKAPPSKRGKGRYCPFHLDHSHATQDCFDLKEEVEGLIQRGYLKEYVKDPKATQNKRERQ 82

Query: 61  PSLTKDGRDKEEPLRRSESSLEDQLKEV------------RVGRGK-------------- 120
                    +E+P +     LED++  +            ++   K              
Sbjct: 83  AYKIYHAFVEEQPTK--IEFLEDEVTHIFHPHNDALVINLKIANAKVHWILVDGGSSPDI 142

Query: 121 --------LLPGKR----------GFGGERVTPEGSIELPVTFGDGQNVVTKMINFLVVD 170
                   +  G+R          GFGGE V PEG IELPVTFG G   +TKM++FLVVD
Sbjct: 143 ISLTAYKTMDLGERGLKSSPAPLVGFGGEWVIPEGRIELPVTFGSGPKSITKMVDFLVVD 202

[Close]

BLAST of Lag0001394 vs. ExPASy TrEMBL
Match: A0A6J1DP33 (uncharacterized protein LOC111022886 OS=Momordica charantia OX=3673 GN=LOC111022886 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.0e-27
Identity = 83/223 (37.22%), Postives = 111/223 (49.78%), Query Frame = 0


Query: 1   MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFVGEPRAEADHGWPR 60
           MK+   +R   QY LFHRDHGH+T++C  LK+E+E LI++GYLKE+V +P+A        
Sbjct: 31  MKAPPSKRSKGQYWLFHRDHGHATQDCFDLKEEVEGLIRSGYLKEYVEDPKA-------- 90

Query: 61  PSLTKDG-RDKEEPLRRSESSLEDQ---------------------------LKEVRVGR 120
              T++G  D   P+R   + +E+Q                           +   +V R
Sbjct: 91  ---TQNGENDSNSPVREIRTIMEEQPAKLEFSEDEATHLFHPHNDALVITLKIANAKVHR 150

Query: 121 GKLLPGKR---------------------------GFGGERVTPEGSIELPVTFGDGQNV 169
             +  G                             GFGGERV PEG IELPV FG G   
Sbjct: 151 ILVDGGSSTYIISLTAYKAMDLGEKALKSSPVPLVGFGGERVIPEGRIELPVMFGSGPKS 210

[Close]

BLAST of Lag0001394 vs. ExPASy TrEMBL
Match: A0A6J1DRG9 (uncharacterized protein LOC111023587 OS=Momordica charantia OX=3673 GN=LOC111023587 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.3e-27
Identity = 88/215 (40.93%), Postives = 114/215 (53.02%), Query Frame = 0


Query: 1   MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKE---------FVGEPR 60
           MK+ + +R   +YCLFHRDH H+T++C  LK+E+E LI+ GYLKE          V E R
Sbjct: 28  MKAPSTKRSKGRYCLFHRDHDHATQDCFDLKEEVEGLIRRGYLKEERIWEKKKADVREAR 87

Query: 61  A-----EADHGW--PRPSLTKDGRDKEEPLRRSESS---LEDQLKEVRVGR--------- 120
           A     E  H +   RP   +   D+   L  S +    +  ++  V+V R         
Sbjct: 88  ANREQNEVYHAYITDRPVTIEFSEDEATQLFHSHNDALVITLKIANVKVHRILVDGGSSA 147

Query: 121 --------------GKLLPGKR----GFGGERVTPEGSIELPVTFGDGQNVVTKMINFLV 170
                          K+L        GFGGERV  EG IELPVTFG G   VTKM++FLV
Sbjct: 148 DIISWTAYKAMDLEEKVLKSSPAPLVGFGGERVISEGRIELPVTFGSGPKGVTKMVDFLV 207

[Close]

BLAST of Lag0001394 vs. ExPASy TrEMBL
Match: A0A7J0DBQ5 (Retrotrans_gag domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_00g0019390 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.5e-26
Identity = 79/200 (39.50%), Postives = 109/200 (54.50%), Query Frame = 0


Query: 1   MKSSADRRDTSQYCLFHRDHGHSTRNCIQLKDEIEALIQNGYLKEFV--GEPRAEADHG- 60
           M+S  ++R  +++C FH+DHGH T +C  LK ++E LI+ G L  F+  G P  + DH  
Sbjct: 474 MRSPPEKRPKNKWCRFHQDHGHETEDCYDLKQQVENLIKQGRLGRFIAWGRPDKKRDHSP 533

Query: 61  --WPRPSLTKDGRDKEEPL-------------RRSESSLEDQLKEVRVGRGKLLPGKR-- 120
               R SL K+ +  ++P+               S  S +   +E+R  +  +  G+   
Sbjct: 534 QRVERRSLEKE-KGNQQPIGEIKVISGGFAGGGESSCSRKKHAREIRNQKEVMSIGQSAK 593

Query: 121 ----------GFGGERVTPEGSIELPVTFGDGQNVVTKMINFLVVDCMSAYNAILGRPTL 171
                     GF G+RVTP GSI LPVT GD     TKM+ FLVVDC SAYN I+GR  L
Sbjct: 594 RPRPVHSLLVGFTGDRVTPLGSIALPVTLGDAPRQTTKMVTFLVVDCPSAYNIIVGRTAL 653

The following BLAST results are available for this feature:

BLAST of Lag0001394 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144467.1	1.5e-33	44.02	uncharacterized protein LOC111014147 [Momordica charantia]	[more]
XP_022150858.1	4.2e-28	38.97	uncharacterized protein LOC111018902 [Momordica charantia]	[more]
XP_022155873.1	2.1e-27	37.22	uncharacterized protein LOC111022886 [Momordica charantia]	[more]
XP_022156748.1	4.7e-27	40.93	uncharacterized protein LOC111023587 [Momordica charantia]	[more]
GFS31826.1	5.2e-26	39.50	hypothetical protein Acr_00g0019390 [Actinidia rufa]	[more]

BLAST of Lag0001394 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0001394 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CTS4	7.3e-34	44.02	uncharacterized protein LOC111014147 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1DAK4	2.1e-28	38.97	uncharacterized protein LOC111018902 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1DP33	1.0e-27	37.22	uncharacterized protein LOC111022886 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DRG9	2.3e-27	40.93	uncharacterized protein LOC111023587 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A7J0DBQ5	2.5e-26	39.50	Retrotrans_gag domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_00g0...	[more]

BLAST of Lag0001394 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..81
None	No IPR available	PANTHER	PTHR33240:SF7	GAG-PRO-LIKE PROTEIN	coord: 108..171
None	No IPR available	PANTHER	PTHR33240	OS08G0508500 PROTEIN	coord: 108..171
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 100..151 e-value: 6.48843E-7 score: 45.4052

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001394.1	Lag0001394.1	mRNA