Lag0001389 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001389
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Integrase core domain containing protein
Location	chr4: 30671419 .. 30671763 (-)
RNA-Seq Expression	Lag0001389
Synteny	Lag0001389

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACCTGAGGTAGCTACTCAGGTCATGGGCTTCGAGAACGCGAAGGATTTGTGGATGGCGATACAAGAACTGTTTGGTGTCCAATCTCGGGCTGAGGAAGATTATCTTCGTCAGGTATTTCAACAATGTCGAAAAGGTTCTCTTAAAATGTCTGACTATTTGCGCGTTATGAAATCTCACGCAGATAACTTGGGACAAGCCGGCAGTCCAGTCAATACTCGATCTTTGATTTCTCAAGTTCTTTTGGGACTTGATGAAGAGTTTAATCCCGTAGTCGCTATGATTCAAGGGAGAGTTGGCATAACGTGGTCTGAGATGCAGGCCGAACTTCTTGTTTTTTAG

mRNA sequence

ATGACACCTGAGGTAGCTACTCAGGTCATGGGCTTCGAGAACGCGAAGGATTTGTGGATGGCGATACAAGAACTGTTTGGTGTCCAATCTCGGGCTGAGGAAGATTATCTTCGTCAGGTATTTCAACAATGTCGAAAAGGTTCTCTTAAAATGTCTGACTATTTGCGCGTTATGAAATCTCACGCAGATAACTTGGGACAAGCCGGCAGTCCAGTCAATACTCGATCTTTGATTTCTCAAGTTCTTTTGGGACTTGATGAAGAGTTTAATCCCGTAGTCGCTATGATTCAAGGGAGAGTTGGCATAACGTGGTCTGAGATGCAGGCCGAACTTCTTGTTTTTTAG

Coding sequence (CDS)

ATGACACCTGAGGTAGCTACTCAGGTCATGGGCTTCGAGAACGCGAAGGATTTGTGGATGGCGATACAAGAACTGTTTGGTGTCCAATCTCGGGCTGAGGAAGATTATCTTCGTCAGGTATTTCAACAATGTCGAAAAGGTTCTCTTAAAATGTCTGACTATTTGCGCGTTATGAAATCTCACGCAGATAACTTGGGACAAGCCGGCAGTCCAGTCAATACTCGATCTTTGATTTCTCAAGTTCTTTTGGGACTTGATGAAGAGTTTAATCCCGTAGTCGCTATGATTCAAGGGAGAGTTGGCATAACGTGGTCTGAGATGCAGGCCGAACTTCTTGTTTTTTAG

Protein sequence

MTPEVATQVMGFENAKDLWMAIQELFGVQSRAEEDYLRQVFQQCRKGSLKMSDYLRVMKSHADNLGQAGSPVNTRSLISQVLLGLDEEFNPVVAMIQGRVGITWSEMQAELLVF

Homology

[Close]

BLAST of Lag0001389 vs. NCBI nr
Match: XP_022148963.1 (uncharacterized protein LOC111017501 [Momordica charantia])

HSP 1 Score: 191.8 bits (486), Expect = 3.2e-45
Identity = 96/110 (87.27%), Postives = 103/110 (93.64%), Query Frame = 0


Query: 1   MTPEVATQVMGFENAKDLWMAIQELFGVQSRAEEDYLRQVFQQCRKGSLKMSDYLRVMKS 60
           MTPEVATQVMG+ENA DLW AIQELFGVQS+AEEDYLRQVFQQ RKGSLKM+D+LRVMKS
Sbjct: 53  MTPEVATQVMGYENACDLWAAIQELFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKS 112

Query: 61  HADNLGQAGSPVNTRSLISQVLLGLDEEFNPVVAMIQGRVGITWSEMQAE 111
           HADNLGQAGSPV TRSLISQVLLGLDEE+NPVVA IQG+ GI+W EMQAE
Sbjct: 113 HADNLGQAGSPVPTRSLISQVLLGLDEEYNPVVATIQGKRGISWPEMQAE 162

[Close]

BLAST of Lag0001389 vs. NCBI nr
Match: XP_038902487.1 (uncharacterized protein LOC120089143 [Benincasa hispida])

HSP 1 Score: 167.5 bits (423), Expect = 6.5e-38
Identity = 84/114 (73.68%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 1   MTPEVATQVMGFENAKDLWMAIQELFGVQSRAEEDYLRQVFQQCRKGSLKMSDYLRVMKS 60
           MT EVA QVMG+EN K LW AIQELFG+QSRA EDYLRQVFQQ  KG++KM +YLRVMK+
Sbjct: 151 MTAEVAMQVMGYENYKYLWAAIQELFGLQSRAGEDYLRQVFQQTCKGAMKMPEYLRVMKT 210

Query: 61  HADNLGQAGSPVNTRSLISQVLLGLDEEFNPVVAMIQGRVGITWSEMQAELLVF 115
           H+DNLG  GSPV TR+L+SQVLLGLDEEFNP VA IQGR  I+W+ MQ ELL F
Sbjct: 211 HSDNLGLTGSPVPTRALVSQVLLGLDEEFNPFVATIQGRSEISWTNMQTELLAF 264

[Close]

BLAST of Lag0001389 vs. NCBI nr
Match: XP_038896600.1 (uncharacterized protein LOC120084860 [Benincasa hispida])

HSP 1 Score: 161.4 bits (407), Expect = 4.6e-36
Identity = 79/114 (69.30%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 1   MTPEVATQVMGFENAKDLWMAIQELFGVQSRAEEDYLRQVFQQCRKGSLKMSDYLRVMKS 60
           M  +VA Q+MG+E AK+LW AIQELFGVQSRAEEDYLRQ+FQQ RKG  KMS YL++MK 
Sbjct: 1   MALDVAVQLMGYETAKELWQAIQELFGVQSRAEEDYLRQLFQQTRKGGQKMSGYLKLMKL 60

Query: 61  HADNLGQAGSPVNTRSLISQVLLGLDEEFNPVVAMIQGRVGITWSEMQAELLVF 115
           H+DNL Q  SPV+TR+LISQVLLGLDEE+N VV  IQG+ GI+W +MQ+ELL +
Sbjct: 61  HSDNLAQTSSPVSTRTLISQVLLGLDEEYNLVVVGIQGKPGISWLDMQSELLTY 114

[Close]

BLAST of Lag0001389 vs. NCBI nr
Match: XP_038905164.1 (uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida])

HSP 1 Score: 159.8 bits (403), Expect = 1.4e-35
Identity = 78/114 (68.42%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 1   MTPEVATQVMGFENAKDLWMAIQELFGVQSRAEEDYLRQVFQQCRKGSLKMSDYLRVMKS 60
           MTPEVA QVMG E AKDLW +I +LFGVQSR EEDYLR VFQ  RKG+LKM +YL+ MK 
Sbjct: 64  MTPEVAIQVMGCECAKDLWTSIPQLFGVQSRVEEDYLRHVFQTTRKGNLKMEEYLQTMKM 123

Query: 61  HADNLGQAGSPVNTRSLISQVLLGLDEEFNPVVAMIQGRVGITWSEMQAELLVF 115
           + DNL QAGSP+  R+L+SQVLLGLDEE+N +VAMIQGRV ++W +MQ+ELL++
Sbjct: 124 NTDNLEQAGSPMPPRTLVSQVLLGLDEEYNAIVAMIQGRVDMSWLDMQSELLLY 177

[Close]

BLAST of Lag0001389 vs. NCBI nr
Match: XP_038905161.1 (uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida])

HSP 1 Score: 159.8 bits (403), Expect = 1.4e-35
Identity = 78/114 (68.42%), Postives = 95/114 (83.33%), Query Frame = 0


Query: 1   MTPEVATQVMGFENAKDLWMAIQELFGVQSRAEEDYLRQVFQQCRKGSLKMSDYLRVMKS 60
           MTPEVA QVMG E AKDLW +I +LFGVQSR EEDYLR VFQ  RKG+LKM +YL+ MK 
Sbjct: 64  MTPEVAIQVMGCECAKDLWTSIPQLFGVQSRVEEDYLRHVFQTTRKGNLKMEEYLQTMKM 123

Query: 61  HADNLGQAGSPVNTRSLISQVLLGLDEEFNPVVAMIQGRVGITWSEMQAELLVF 115
           + DNL QAGSP+  R+L+SQVLLGLDEE+N +VAMIQGRV ++W +MQ+ELL++
Sbjct: 124 NTDNLEQAGSPMPPRTLVSQVLLGLDEEYNAIVAMIQGRVDMSWLDMQSELLLY 177

The following BLAST results are available for this feature:

BLAST of Lag0001389 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148963.1	3.2e-45	87.27	uncharacterized protein LOC111017501 [Momordica charantia]	[more]
XP_038902487.1	6.5e-38	73.68	uncharacterized protein LOC120089143 [Benincasa hispida]	[more]
XP_038896600.1	4.6e-36	69.30	uncharacterized protein LOC120084860 [Benincasa hispida]	[more]
XP_038905164.1	1.4e-35	68.42	uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida]	[more]
XP_038905161.1	1.4e-35	68.42	uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida]	[more]

BLAST of Lag0001389 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 1..112 e-value: 7.9E-9 score: 35.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001389.1	Lag0001389.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding