Lag0001321 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0001321
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr4: 29360845 .. 29361189 (-)
RNA-Seq ExpressionLag0001321
SyntenyLag0001321
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGATGCTTCGGTTGGAGGGGCCCTTTTGGCAAAAACTTTCAATGAAGCCCATGAAATTTTAGAGAGAATATCTACTAATAGTTGTCAGTGGTCAGATGTTAGAGGCACAAATAAAAAGGTTAAGAGTGTGTTAGAAGTTGATGGTGTGTTCACCATTAGGGCTGATCTTGCAATAATTGCTAACACTCTTAAAAATGTGATAGTGATTAGTCATCAGCAGCCACCAGCTGTGGAGCCTGCTTCAGTGGTGAACCAAGCAGCAGAGGAAGCATGTGTCTATTGTGGTGAAGATCACAACTACGAGTTTTGCCCCAGCAATCCAGCTTCGTGTTTTTTGTAG

mRNA sequence

ATGGTTGATGCTTCGGTTGGAGGGGCCCTTTTGGCAAAAACTTTCAATGAAGCCCATGAAATTTTAGAGAGAATATCTACTAATAGTTGTCAGTGGTCAGATGTTAGAGGCACAAATAAAAAGGTTAAGAGTGTGTTAGAAGTTGATGGTGTGTTCACCATTAGGGCTGATCTTGCAATAATTGCTAACACTCTTAAAAATGTGATAGTGATTAGTCATCAGCAGCCACCAGCTGTGGAGCCTGCTTCAGTGGTGAACCAAGCAGCAGAGGAAGCATGTGTCTATTGTGGTGAAGATCACAACTACGAGTTTTGCCCCAGCAATCCAGCTTCGTGTTTTTTGTAG

Coding sequence (CDS)

ATGGTTGATGCTTCGGTTGGAGGGGCCCTTTTGGCAAAAACTTTCAATGAAGCCCATGAAATTTTAGAGAGAATATCTACTAATAGTTGTCAGTGGTCAGATGTTAGAGGCACAAATAAAAAGGTTAAGAGTGTGTTAGAAGTTGATGGTGTGTTCACCATTAGGGCTGATCTTGCAATAATTGCTAACACTCTTAAAAATGTGATAGTGATTAGTCATCAGCAGCCACCAGCTGTGGAGCCTGCTTCAGTGGTGAACCAAGCAGCAGAGGAAGCATGTGTCTATTGTGGTGAAGATCACAACTACGAGTTTTGCCCCAGCAATCCAGCTTCGTGTTTTTTGTAG

Protein sequence

MVDASVGGALLAKTFNEAHEILERISTNSCQWSDVRGTNKKVKSVLEVDGVFTIRADLAIIANTLKNVIVISHQQPPAVEPASVVNQAAEEACVYCGEDHNYEFCPSNPASCFL
Homology
BLAST of Lag0001321 vs. NCBI nr
Match: XP_023521407.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111785222 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 123.2 bits (308), Expect = 1.4e-24
Identity = 61/115 (53.04%), Postives = 84/115 (73.04%), Query Frame = 0

Query: 1   MVDASVGGALLAKTFNEAHEILERISTNSCQWSDVRGT-NKKVKSVLEVDGVFTIRADLA 60
           +VDAS  GA+L+KT+NEA+EILERI++N+CQW+DVR    +K + VLEVD + +I A LA
Sbjct: 559 VVDASANGAILSKTYNEAYEILERIASNNCQWADVRSNPGRKTRGVLEVDALSSINAQLA 618

Query: 61  IIANTLKNVIVISHQQPPA-VEPASVVNQAAEEACVYCGEDHNYEFCPSNPASCF 114
            + N L+N+ +       A V  A+V+NQ A E+CVYCGE+H ++ CPSNPAS F
Sbjct: 619 SVTNILQNLALGQDSMIKAPVHTAAVINQTAAESCVYCGEEHTFDQCPSNPASIF 673

BLAST of Lag0001321 vs. NCBI nr
Match: XP_022926214.1 (uncharacterized protein LOC111433394 [Cucurbita moschata])

HSP 1 Score: 121.7 bits (304), Expect = 4.1e-24
Identity = 60/115 (52.17%), Postives = 83/115 (72.17%), Query Frame = 0

Query: 1   MVDASVGGALLAKTFNEAHEILERISTNSCQWSDVRGT-NKKVKSVLEVDGVFTIRADLA 60
           +VDAS  GA+L+KT+NEA+EILERI++N+CQW+DVR    +K + VLEVD + +I A LA
Sbjct: 227 VVDASANGAILSKTYNEAYEILERIASNNCQWADVRSNPGRKTRGVLEVDALSSINAQLA 286

Query: 61  IIANTLKNVIVISHQQPPA-VEPASVVNQAAEEACVYCGEDHNYEFCPSNPASCF 114
            + N L+N+ +       A V   +V+NQ A E+CVYCGE+H ++ CPSNPAS F
Sbjct: 287 SVTNILQNLALGQDSMIKAPVHTVAVINQTAAESCVYCGEEHTFDQCPSNPASIF 341

BLAST of Lag0001321 vs. NCBI nr
Match: XP_022929949.1 (uncharacterized protein LOC111436411 [Cucurbita moschata])

HSP 1 Score: 121.7 bits (304), Expect = 4.1e-24
Identity = 60/115 (52.17%), Postives = 83/115 (72.17%), Query Frame = 0

Query: 1   MVDASVGGALLAKTFNEAHEILERISTNSCQWSDVRGT-NKKVKSVLEVDGVFTIRADLA 60
           +VDAS  GA+L+KT+NEA+EILERI++N+CQW+DVR    +K + VLEVD + +I A LA
Sbjct: 256 VVDASANGAILSKTYNEAYEILERIASNNCQWADVRSNPGRKTRGVLEVDALSSINAQLA 315

Query: 61  IIANTLKNVIVISHQQPPA-VEPASVVNQAAEEACVYCGEDHNYEFCPSNPASCF 114
            + N L+N+ +       A V  A+ +NQ A E+CVYCGE+H ++ CPSNPAS F
Sbjct: 316 SVTNILQNLALGQDSMIKAPVHTAAAINQTAAESCVYCGEEHTFDQCPSNPASIF 370

BLAST of Lag0001321 vs. NCBI nr
Match: XP_022960432.1 (uncharacterized protein LOC111461168 [Cucurbita moschata])

HSP 1 Score: 115.2 bits (287), Expect = 3.8e-22
Identity = 58/113 (51.33%), Postives = 79/113 (69.91%), Query Frame = 0

Query: 1   MVDASVGGALLAKTFNEAHEILERISTNSCQWSDVRGT-NKKVKSVLEVDGVFTIRADLA 60
           +VDAS  GA+L+KT+NEA+EILERI++N+CQW+DVR    KK + VLEVD + +I A LA
Sbjct: 218 VVDASANGAMLSKTYNEAYEILERIASNNCQWADVRSNPGKKTRGVLEVDALSSINAQLA 277

Query: 61  IIANTLKNVIVISHQQPPA-VEPASVVNQAAEEACVYCGEDHNYEFCPSNPAS 112
            + N L+N+         A    A+V+ Q A E+CVYCGE+H ++ CP NPAS
Sbjct: 278 SVTNILQNLAFGQGTMIKAPAHTAAVMTQTATESCVYCGEEHTFDQCPRNPAS 330

BLAST of Lag0001321 vs. NCBI nr
Match: XP_022947838.1 (uncharacterized protein LOC111451598 [Cucurbita moschata])

HSP 1 Score: 112.1 bits (279), Expect = 3.2e-21
Identity = 59/115 (51.30%), Postives = 78/115 (67.83%), Query Frame = 0

Query: 1   MVDASVGGALLAKTFNEAHEILERISTNSCQWSDVRGT-NKKVKSVLEVDGVFTIRADLA 60
           +VDAS  G +L+KT+NEA+EILERI++N+CQW DVR    KK + VLEVD + +I A LA
Sbjct: 197 VVDASANGDILSKTYNEAYEILERIASNNCQWVDVRSNPGKKTREVLEVDALSSINAQLA 256

Query: 61  IIANTLKNVIVISHQQPPA-VEPASVVNQAAEEACVYCGEDHNYEFCPSNPASCF 114
            + N L+N+         A    A+V+ Q A E+CVYCGE H ++ CPSNPAS F
Sbjct: 257 SMTNILQNLAFGQGSMIKAPAHTATVMIQTATESCVYCGEKHTFDQCPSNPASIF 311

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023521407.11.4e-2453.04LOW QUALITY PROTEIN: uncharacterized protein LOC111785222 [Cucurbita pepo subsp.... [more]
XP_022926214.14.1e-2452.17uncharacterized protein LOC111433394 [Cucurbita moschata][more]
XP_022929949.14.1e-2452.17uncharacterized protein LOC111436411 [Cucurbita moschata][more]
XP_022960432.13.8e-2251.33uncharacterized protein LOC111461168 [Cucurbita moschata][more]
XP_022947838.13.2e-2151.30uncharacterized protein LOC111451598 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0001321.1Lag0001321.1mRNA