Lag0001302 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0001302
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionExpansin-like protein
Locationchr4: 29034171 .. 29034473 (-)
RNA-Seq ExpressionLag0001302
SyntenyLag0001302
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAATTCTAGCAAGTTGAAACTAATTTTTGAATGTTGGGTTTTGCAGGACGGTGCCCTTGTGTCAACTGACATGAGAAGAAGAAAGAATGGGGCAATTTGGGAAGCGGATTCAGTGCCTGAAGGGCAACTGAACTTCCAAATAAGGTTAATTTCAAGTGATGTCATTTTTTTCACATTGCAAGATCTTCCTCAAGATTGGAAACTTGGCGCGATTTATGATACTGGAATTCAAATTGGTCGTAACATTCCCGAAGGGCAAGAGAGTTGTAGTCCATGTGTTGGAGGGCATTGGAACTGA

mRNA sequence

ATGATCAATTCTAGCAAGTTGAAACTAATTTTTGAATGTTGGGTTTTGCAGGACGGTGCCCTTGTGTCAACTGACATGAGAAGAAGAAAGAATGGGGCAATTTGGGAAGCGGATTCAGTGCCTGAAGGGCAACTGAACTTCCAAATAAGGTTAATTTCAAGTGATGTCATTTTTTTCACATTGCAAGATCTTCCTCAAGATTGGAAACTTGGCGCGATTTATGATACTGGAATTCAAATTGGTCGTAACATTCCCGAAGGGCAAGAGAGTTGTAGTCCATGTGTTGGAGGGCATTGGAACTGA

Coding sequence (CDS)

ATGATCAATTCTAGCAAGTTGAAACTAATTTTTGAATGTTGGGTTTTGCAGGACGGTGCCCTTGTGTCAACTGACATGAGAAGAAGAAAGAATGGGGCAATTTGGGAAGCGGATTCAGTGCCTGAAGGGCAACTGAACTTCCAAATAAGGTTAATTTCAAGTGATGTCATTTTTTTCACATTGCAAGATCTTCCTCAAGATTGGAAACTTGGCGCGATTTATGATACTGGAATTCAAATTGGTCGTAACATTCCCGAAGGGCAAGAGAGTTGTAGTCCATGTGTTGGAGGGCATTGGAACTGA

Protein sequence

MINSSKLKLIFECWVLQDGALVSTDMRRRKNGAIWEADSVPEGQLNFQIRLISSDVIFFTLQDLPQDWKLGAIYDTGIQIGRNIPEGQESCSPCVGGHWN
Homology
BLAST of Lag0001302 vs. NCBI nr
Match: XP_038888869.1 (expansin-like A3 [Benincasa hispida])

HSP 1 Score: 75.5 bits (184), Expect = 2.9e-10
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 0

Query: 26  MRRRKNGAIWEADSVPEGQLNFQIRLISS-DVIFFTLQ-DLPQDWKLGAIYDTGIQIGRN 85
           M RR   A+WE D+VPE  + FQIR+IS  D ++   +  +P DWK G IYD G+QI   
Sbjct: 189 MTRRHGTAVWEIDTVPEAAVMFQIRVISGFDGMWINAERAVPADWKPGMIYDLGVQID-T 248

Query: 86  IPEGQESCSPCVGGHW 100
           I +GQE+C+ C  GHW
Sbjct: 249 IAKGQENCTKCDEGHW 263

BLAST of Lag0001302 vs. NCBI nr
Match: XP_022928449.1 (expansin-like A2 isoform X1 [Cucurbita moschata])

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 0

Query: 26  MRRRKNGAIWEADSVPEGQLNFQIRLISS-DVIFFTLQD-LPQDWKLGAIYDTGIQIGRN 85
           M RR   A+WE D+ PE  + FQ+R+IS  D ++ T +  +P DWK G IYD G+Q+   
Sbjct: 189 MSRRHGTAVWEIDTAPEAAVVFQLRVISGFDGMWVTAERVVPADWKPGMIYDLGVQMDA- 248

Query: 86  IPEGQESCSPCVGGHW 100
           I +GQESC  C  GHW
Sbjct: 249 IAKGQESCRKCDEGHW 263

BLAST of Lag0001302 vs. NCBI nr
Match: XP_023529769.1 (expansin-like A2 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 0

Query: 26  MRRRKNGAIWEADSVPEGQLNFQIRLISS-DVIFFTLQD-LPQDWKLGAIYDTGIQIGRN 85
           M RR   A+WE D+ PE  + FQ+R+IS  D ++ T +  +P DWK G IYD G+Q+   
Sbjct: 190 MSRRHGTAVWEIDTAPEAAVVFQLRVISGFDGMWVTAERVVPADWKPGMIYDLGVQMDA- 249

Query: 86  IPEGQESCSPCVGGHW 100
           I +GQESC  C  GHW
Sbjct: 250 IAKGQESCRKCDEGHW 264

BLAST of Lag0001302 vs. NCBI nr
Match: KAG7022750.1 (Expansin-like A3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 0

Query: 26  MRRRKNGAIWEADSVPEGQLNFQIRLISS-DVIFFTLQ-DLPQDWKLGAIYDTGIQIGRN 85
           M RR   A+WE D+ PE  + FQ+R+IS  D ++ T +  +P DWK G IYD G+Q+   
Sbjct: 101 MSRRHGTAVWEIDTAPEAAVVFQLRVISGFDGMWVTAERAVPADWKPGMIYDLGVQMDA- 160

Query: 86  IPEGQESCSPCVGGHW 100
           I +GQESC  C  GHW
Sbjct: 161 IAKGQESCRKCDEGHW 175

BLAST of Lag0001302 vs. NCBI nr
Match: XP_022135692.1 (expansin-like A2 [Momordica charantia])

HSP 1 Score: 72.0 bits (175), Expect = 3.3e-09
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 0

Query: 26  MRRRKNGAIWEADSVPEGQLNFQIRLISS-DVIFFTLQ-DLPQDWKLGAIYDTGIQIGRN 85
           M RR   A+WE D+  EG + FQ+R+IS  D ++   + ++P +W+ G IYD GIQI   
Sbjct: 189 MNRRHGTAVWETDAAVEGAVVFQLRVISGFDGMWVRAEREMPANWRPGMIYDLGIQIDA- 248

Query: 86  IPEGQESCSPCVGGHW 100
           I +GQESC+PC  G W
Sbjct: 249 IAKGQESCTPCDEGQW 263

BLAST of Lag0001302 vs. ExPASy Swiss-Prot
Match: Q9LZT4 (Expansin-like A1 OS=Arabidopsis thaliana OX=3702 GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.4e-08
Identity = 28/88 (31.82%), Postives = 42/88 (47.73%), Query Frame = 0

Query: 15  VLQDGALVSTDMRRRKNGAIWEADSVPEGQLNFQIRLIS--SDVIFFTLQDLPQDWKLGA 74
           + Q G+  +     R +GA+W  D VP G + F+  +       + ++   LP +W+ G 
Sbjct: 181 IAQVGSSPNWGYMTRSHGAVWVTDKVPTGAIQFRFVVTGGYDGKMIWSQSVLPSNWEAGK 240

Query: 75  IYDTGIQIGRNIPEGQESCSPCVGGHWN 101
           IYD G+QI       QE C PC    WN
Sbjct: 241 IYDAGVQI---TDIAQEGCDPCDAHIWN 265

BLAST of Lag0001302 vs. ExPASy Swiss-Prot
Match: Q10S70 (Expansin-like A1 OS=Oryza sativa subsp. japonica OX=39947 GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.1e-04
Identity = 25/76 (32.89%), Postives = 37/76 (48.68%), Query Frame = 0

Query: 29  RKNGAIWEADSVPEGQLNFQIRLI-----SSDVIFFTLQDLPQDWKLGAIYDTGIQIGRN 88
           R++G  W   + P G L  Q+RL+         ++   + LP+ W+ G +YDTG+QI   
Sbjct: 208 REHGPSWSMANAPPGPL--QMRLVVTGGYDGKWVWADREVLPRRWRAGEVYDTGVQI--- 267

Query: 89  IPEGQESCSPCVGGHW 100
               QE C PC    W
Sbjct: 268 TDIAQEGCFPCDTHEW 278

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038888869.12.9e-1048.68expansin-like A3 [Benincasa hispida][more]
XP_022928449.11.1e-0947.37expansin-like A2 isoform X1 [Cucurbita moschata][more]
XP_023529769.11.1e-0947.37expansin-like A2 isoform X1 [Cucurbita pepo subsp. pepo][more]
KAG7022750.11.1e-0947.37Expansin-like A3, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022135692.13.3e-0946.05expansin-like A2 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Q9LZT46.4e-0831.82Expansin-like A1 OS=Arabidopsis thaliana OX=3702 GN=EXLA1 PE=2 SV=1[more]
Q10S701.1e-0432.89Expansin-like A1 OS=Oryza sativa subsp. japonica OX=39947 GN=EXLA1 PE=2 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036749Expansin, cellulose-binding-like domain superfamilyGENE3D2.60.40.760coord: 2..80
e-value: 1.1E-9
score: 40.0
IPR036749Expansin, cellulose-binding-like domain superfamilySUPERFAMILY49590PHL pollen allergencoord: 28..76
IPR007117Expansin, cellulose-binding-like domainPROSITEPS50843EXPANSIN_CBDcoord: 1..76
score: 9.591625

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0001302.1Lag0001302.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0110165 cellular anatomical entity