Lag0001302 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001302
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Expansin-like protein
Location	chr4: 29034171 .. 29034473 (-)
RNA-Seq Expression	Lag0001302
Synteny	Lag0001302

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAATTCTAGCAAGTTGAAACTAATTTTTGAATGTTGGGTTTTGCAGGACGGTGCCCTTGTGTCAACTGACATGAGAAGAAGAAAGAATGGGGCAATTTGGGAAGCGGATTCAGTGCCTGAAGGGCAACTGAACTTCCAAATAAGGTTAATTTCAAGTGATGTCATTTTTTTCACATTGCAAGATCTTCCTCAAGATTGGAAACTTGGCGCGATTTATGATACTGGAATTCAAATTGGTCGTAACATTCCCGAAGGGCAAGAGAGTTGTAGTCCATGTGTTGGAGGGCATTGGAACTGA

mRNA sequence

ATGATCAATTCTAGCAAGTTGAAACTAATTTTTGAATGTTGGGTTTTGCAGGACGGTGCCCTTGTGTCAACTGACATGAGAAGAAGAAAGAATGGGGCAATTTGGGAAGCGGATTCAGTGCCTGAAGGGCAACTGAACTTCCAAATAAGGTTAATTTCAAGTGATGTCATTTTTTTCACATTGCAAGATCTTCCTCAAGATTGGAAACTTGGCGCGATTTATGATACTGGAATTCAAATTGGTCGTAACATTCCCGAAGGGCAAGAGAGTTGTAGTCCATGTGTTGGAGGGCATTGGAACTGA

Coding sequence (CDS)

ATGATCAATTCTAGCAAGTTGAAACTAATTTTTGAATGTTGGGTTTTGCAGGACGGTGCCCTTGTGTCAACTGACATGAGAAGAAGAAAGAATGGGGCAATTTGGGAAGCGGATTCAGTGCCTGAAGGGCAACTGAACTTCCAAATAAGGTTAATTTCAAGTGATGTCATTTTTTTCACATTGCAAGATCTTCCTCAAGATTGGAAACTTGGCGCGATTTATGATACTGGAATTCAAATTGGTCGTAACATTCCCGAAGGGCAAGAGAGTTGTAGTCCATGTGTTGGAGGGCATTGGAACTGA

Protein sequence

MINSSKLKLIFECWVLQDGALVSTDMRRRKNGAIWEADSVPEGQLNFQIRLISSDVIFFTLQDLPQDWKLGAIYDTGIQIGRNIPEGQESCSPCVGGHWN

Homology

[Close]

BLAST of Lag0001302 vs. NCBI nr
Match: XP_038888869.1 (expansin-like A3 [Benincasa hispida])

HSP 1 Score: 75.5 bits (184), Expect = 2.9e-10
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 26  MRRRKNGAIWEADSVPEGQLNFQIRLISS-DVIFFTLQ-DLPQDWKLGAIYDTGIQIGRN 85
           M RR   A+WE D+VPE  + FQIR+IS  D ++   +  +P DWK G IYD G+QI   
Sbjct: 189 MTRRHGTAVWEIDTVPEAAVMFQIRVISGFDGMWINAERAVPADWKPGMIYDLGVQID-T 248

Query: 86  IPEGQESCSPCVGGHW 100
           I +GQE+C+ C  GHW
Sbjct: 249 IAKGQENCTKCDEGHW 263

[Close]

BLAST of Lag0001302 vs. NCBI nr
Match: XP_022928449.1 (expansin-like A2 isoform X1 [Cucurbita moschata])

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 0


Query: 26  MRRRKNGAIWEADSVPEGQLNFQIRLISS-DVIFFTLQD-LPQDWKLGAIYDTGIQIGRN 85
           M RR   A+WE D+ PE  + FQ+R+IS  D ++ T +  +P DWK G IYD G+Q+   
Sbjct: 189 MSRRHGTAVWEIDTAPEAAVVFQLRVISGFDGMWVTAERVVPADWKPGMIYDLGVQMDA- 248

Query: 86  IPEGQESCSPCVGGHW 100
           I +GQESC  C  GHW
Sbjct: 249 IAKGQESCRKCDEGHW 263

[Close]

BLAST of Lag0001302 vs. NCBI nr
Match: XP_023529769.1 (expansin-like A2 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 0


Query: 26  MRRRKNGAIWEADSVPEGQLNFQIRLISS-DVIFFTLQD-LPQDWKLGAIYDTGIQIGRN 85
           M RR   A+WE D+ PE  + FQ+R+IS  D ++ T +  +P DWK G IYD G+Q+   
Sbjct: 190 MSRRHGTAVWEIDTAPEAAVVFQLRVISGFDGMWVTAERVVPADWKPGMIYDLGVQMDA- 249

Query: 86  IPEGQESCSPCVGGHW 100
           I +GQESC  C  GHW
Sbjct: 250 IAKGQESCRKCDEGHW 264

[Close]

BLAST of Lag0001302 vs. NCBI nr
Match: KAG7022750.1 (Expansin-like A3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-09
Identity = 36/76 (47.37%), Postives = 48/76 (63.16%), Query Frame = 0


Query: 26  MRRRKNGAIWEADSVPEGQLNFQIRLISS-DVIFFTLQ-DLPQDWKLGAIYDTGIQIGRN 85
           M RR   A+WE D+ PE  + FQ+R+IS  D ++ T +  +P DWK G IYD G+Q+   
Sbjct: 101 MSRRHGTAVWEIDTAPEAAVVFQLRVISGFDGMWVTAERAVPADWKPGMIYDLGVQMDA- 160

Query: 86  IPEGQESCSPCVGGHW 100
           I +GQESC  C  GHW
Sbjct: 161 IAKGQESCRKCDEGHW 175

[Close]

BLAST of Lag0001302 vs. NCBI nr
Match: XP_022135692.1 (expansin-like A2 [Momordica charantia])

HSP 1 Score: 72.0 bits (175), Expect = 3.3e-09
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 26  MRRRKNGAIWEADSVPEGQLNFQIRLISS-DVIFFTLQ-DLPQDWKLGAIYDTGIQIGRN 85
           M RR   A+WE D+  EG + FQ+R+IS  D ++   + ++P +W+ G IYD GIQI   
Sbjct: 189 MNRRHGTAVWETDAAVEGAVVFQLRVISGFDGMWVRAEREMPANWRPGMIYDLGIQIDA- 248

Query: 86  IPEGQESCSPCVGGHW 100
           I +GQESC+PC  G W
Sbjct: 249 IAKGQESCTPCDEGQW 263

[Close]

BLAST of Lag0001302 vs. ExPASy Swiss-Prot
Match: Q9LZT4 (Expansin-like A1 OS=Arabidopsis thaliana OX=3702 GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.4e-08
Identity = 28/88 (31.82%), Postives = 42/88 (47.73%), Query Frame = 0


Query: 15  VLQDGALVSTDMRRRKNGAIWEADSVPEGQLNFQIRLIS--SDVIFFTLQDLPQDWKLGA 74
           + Q G+  +     R +GA+W  D VP G + F+  +       + ++   LP +W+ G 
Sbjct: 181 IAQVGSSPNWGYMTRSHGAVWVTDKVPTGAIQFRFVVTGGYDGKMIWSQSVLPSNWEAGK 240

Query: 75  IYDTGIQIGRNIPEGQESCSPCVGGHWN 101
           IYD G+QI       QE C PC    WN
Sbjct: 241 IYDAGVQI---TDIAQEGCDPCDAHIWN 265

[Close]

BLAST of Lag0001302 vs. ExPASy Swiss-Prot
Match: Q10S70 (Expansin-like A1 OS=Oryza sativa subsp. japonica OX=39947 GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.1e-04
Identity = 25/76 (32.89%), Postives = 37/76 (48.68%), Query Frame = 0


Query: 29  RKNGAIWEADSVPEGQLNFQIRLI-----SSDVIFFTLQDLPQDWKLGAIYDTGIQIGRN 88
           R++G  W   + P G L  Q+RL+         ++   + LP+ W+ G +YDTG+QI   
Sbjct: 208 REHGPSWSMANAPPGPL--QMRLVVTGGYDGKWVWADREVLPRRWRAGEVYDTGVQI--- 267

Query: 89  IPEGQESCSPCVGGHW 100
               QE C PC    W
Sbjct: 268 TDIAQEGCFPCDTHEW 278

The following BLAST results are available for this feature:

BLAST of Lag0001302 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888869.1	2.9e-10	48.68	expansin-like A3 [Benincasa hispida]	[more]
XP_022928449.1	1.1e-09	47.37	expansin-like A2 isoform X1 [Cucurbita moschata]	[more]
XP_023529769.1	1.1e-09	47.37	expansin-like A2 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KAG7022750.1	1.1e-09	47.37	Expansin-like A3, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022135692.1	3.3e-09	46.05	expansin-like A2 [Momordica charantia]	[more]

BLAST of Lag0001302 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZT4	6.4e-08	31.82	Expansin-like A1 OS=Arabidopsis thaliana OX=3702 GN=EXLA1 PE=2 SV=1	[more]
Q10S70	1.1e-04	32.89	Expansin-like A1 OS=Oryza sativa subsp. japonica OX=39947 GN=EXLA1 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036749	Expansin, cellulose-binding-like domain superfamily	GENE3D	2.60.40.760		coord: 2..80 e-value: 1.1E-9 score: 40.0
IPR036749	Expansin, cellulose-binding-like domain superfamily	SUPERFAMILY	49590	PHL pollen allergen	coord: 28..76
IPR007117	Expansin, cellulose-binding-like domain	PROSITE	PS50843	EXPANSIN_CBD	coord: 1..76 score: 9.591625

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001302.1	Lag0001302.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity