Lag0001259 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001259
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ribonuclease H
Location	chr4: 28100361 .. 28101778 (-)
RNA-Seq Expression	Lag0001259
Synteny	Lag0001259

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAAGCATGGAGGGCAAGGTATGTACTCACTCCTACTCGATGAAAACTCACCAAAATTGGAGTTTACAGAGAAGGAGGTCGTGGGGATACACCATCCGCACAACGACGCACTGGTGGTTACCTTAACGGTTGCCAACGCAAAAGTTCACCGAATCCTCATTGATGGGGGAAGTTCCGCTGATGTGCTCTGAGCCGCCGCGTTCAACGCCATGAAGCTGGGGAGCGATCGCCTAAGACCGAGCCTCACGCCGCTAGTGGGTTTTGGCGGGAAAAAATAAGCCCGGGAGGAAGCGTTGAACTGCCAGTGGCGTTTGGAGAAGGGTTGCAAACAGTAACAAGGATGATCAACTTTCTGGTAGTAGACTGCGTCCCGGCGTATAATGCCATCCTGGGACGACCTACCCTACATGGACTCAGAGCTGTGGCCTCAACCTACCACCAGGTCCTGAAATTCCCAACTGAAGAAGGGGTAGGAGCAGTGTATGGTGAACAGAAGCTGTCGAGGGAGTGCTACTTTATGGCACTCAAGAACGTGGACAGGAGAGTCCAGGCAAGGTTAGCTTCGGAGGATGGCCAAGGCCGAGCATTTGAGGGAGCAAGCTATTCCCTTCCAATGGAGCATTGATCCTTTTCATTATGTCTTTCAGTCCATTGGACCATGTTCATTTTCCTTTTATGTTGATTTCTTCAGAATGTACTCAGTCGATTTATTTGAAATAAAGCATTTCGAATTTTGTTTCAGAAGTTTAAAGGCGCTTGAAGAGAGACCCGGGGACACCCTAGGCCTCCCCAAGCTTTTTCCCCAGAAGAGTGTACGCACCCCTGGGATGAACAGAGTCGCTTGAAGAGAGGCCCGGGGACACCCTAGGCCTCCCCAAGCTTCTTCCCCAGAAGAGTGTACGCACCCCTAGGATGAACAGAGCCGCTTGAAGAGAGGCCCGGGGACACCCTAGGCCTCCCCAAGCTTCTTCCCCAAAAGAGTGTACGCACCCCTAGGATGAACAGAGCCACTTGAAGAGAGGCCCGGGGACGCCCGAGGCCTCCCCAAGCTTTTTCCCCAGAAGAGTGTACGCACCCCTGGGACGAGCAGATCGGCTTGGAAAGAGGCCCGGGGACTCCCTAGACCTCCCTAAGTTTTTCCCCGAAGATGAATACAGTAGCTGGAGAATTTTCTCAACCTCCCAAAGTTCCTATAATCTGGGGCACATGCTCCAGAATGGGATATGGCCGAGCAGATTGGCGGGCGACACAGAAGAAATGCTCAGCCCATGCTGTAGCCGAGGCCGAGCACCTCAGTGTCGAGGCCAACCTAGAGGCACGTCGAACATGAATCTGCTACCCAAAATGCCAGGTATGAGGCTATTCTATTTACTCAAAATATGCAATTCTAGGGATAATAGATGCACATTTTGA

mRNA sequence

ATGGAAAAAGCATGGAGGGCAAGCCGCCGCGTTCAACGCCATGAAGCTGGGGAGCGATCGCCTAAGACCGAGCCTCACGCCGCTAGTGGGTTTTGGCGGGAAAAAATAAGCCCGGGAGGAAGCGTTGAACTGCCAGTGGCGTTTGGAGAAGGGTTGCAAACAGTAACAAGGATGATCAACTTTCTGGTAGTAGACTGCGTCCCGGCGTATAATGCCATCCTGGGACGACCTACCCTACATGGACTCAGAGCTGTGGCCTCAACCTACCACCAGGTCCTGAAATTCCCAACTGAAGAAGGGGTAGGAGCAGTGTATGGTGAACAGAAGCTGTCGAGGGAGTGCTACTTTATGGCACTCAAGAACGTGGACAGGAGAGTCCAGGCAAGAAGTTTAAAGGCGCTTGAAGAGAGACCCGGGGACACCCTAGGCCTCCCCAAGCTTTTTCCCCAGAAGAGTGATGAACAGAGCCACTTGAAGAGAGGCCCGGGGACGCCCGAGGCCTCCCCAAGCTTTTTCCCCAGAAGAGTGTACGCACCCCTGGGACGAGCAGATCGGCTTGGAAAGAGGCCCGGGGACTCCCTAGACCTCCCTAAGTTTTTCCCCGAAGATGAATACAGTAGCTGGAGAATTTTCTCAACCTCCCAAAGTTCCTATAATCTGGGGCACATGCTCCAGAATGGGATATGGCCGAGCAGATTGGCGGGCGACACAGAAGAAATGCTCAGCCCATGCTGTAGCCGAGGCCGAGCACCTCAGTGTCGAGGCCAACCTAGAGGCACGTCGAACATGAATCTGCTACCCAAAATGCCAGGTATGAGGCTATTCTATTTACTCAAAATATGCAATTCTAGGGATAATAGATGCACATTTTGA

Coding sequence (CDS)

ATGGAAAAAGCATGGAGGGCAAGCCGCCGCGTTCAACGCCATGAAGCTGGGGAGCGATCGCCTAAGACCGAGCCTCACGCCGCTAGTGGGTTTTGGCGGGAAAAAATAAGCCCGGGAGGAAGCGTTGAACTGCCAGTGGCGTTTGGAGAAGGGTTGCAAACAGTAACAAGGATGATCAACTTTCTGGTAGTAGACTGCGTCCCGGCGTATAATGCCATCCTGGGACGACCTACCCTACATGGACTCAGAGCTGTGGCCTCAACCTACCACCAGGTCCTGAAATTCCCAACTGAAGAAGGGGTAGGAGCAGTGTATGGTGAACAGAAGCTGTCGAGGGAGTGCTACTTTATGGCACTCAAGAACGTGGACAGGAGAGTCCAGGCAAGAAGTTTAAAGGCGCTTGAAGAGAGACCCGGGGACACCCTAGGCCTCCCCAAGCTTTTTCCCCAGAAGAGTGATGAACAGAGCCACTTGAAGAGAGGCCCGGGGACGCCCGAGGCCTCCCCAAGCTTTTTCCCCAGAAGAGTGTACGCACCCCTGGGACGAGCAGATCGGCTTGGAAAGAGGCCCGGGGACTCCCTAGACCTCCCTAAGTTTTTCCCCGAAGATGAATACAGTAGCTGGAGAATTTTCTCAACCTCCCAAAGTTCCTATAATCTGGGGCACATGCTCCAGAATGGGATATGGCCGAGCAGATTGGCGGGCGACACAGAAGAAATGCTCAGCCCATGCTGTAGCCGAGGCCGAGCACCTCAGTGTCGAGGCCAACCTAGAGGCACGTCGAACATGAATCTGCTACCCAAAATGCCAGGTATGAGGCTATTCTATTTACTCAAAATATGCAATTCTAGGGATAATAGATGCACATTTTGA

Protein sequence

MEKAWRASRRVQRHEAGERSPKTEPHAASGFWREKISPGGSVELPVAFGEGLQTVTRMINFLVVDCVPAYNAILGRPTLHGLRAVASTYHQVLKFPTEEGVGAVYGEQKLSRECYFMALKNVDRRVQARSLKALEERPGDTLGLPKLFPQKSDEQSHLKRGPGTPEASPSFFPRRVYAPLGRADRLGKRPGDSLDLPKFFPEDEYSSWRIFSTSQSSYNLGHMLQNGIWPSRLAGDTEEMLSPCCSRGRAPQCRGQPRGTSNMNLLPKMPGMRLFYLLKICNSRDNRCTF

Homology

[Close]

BLAST of Lag0001259 vs. NCBI nr
Match: XP_022158687.1 (uncharacterized protein LOC111025147 [Momordica charantia])

HSP 1 Score: 124.0 bits (310), Expect = 2.1e-24
Identity = 57/110 (51.82%), Postives = 80/110 (72.73%), Query Frame = 0


Query: 15  EAGERSPKTEPHAASGFWREKISPGGSVELPVAFGEGLQTVTRMINFLVVDCVPAYNAIL 74
           + GE+  K+ P    GF RE++ P G +EL V FG G ++VT+M++FLVVD   +YNAIL
Sbjct: 93  DLGEKVLKSSPAPLIGFGRERVIPEGRIELHVTFGSGPKSVTKMMDFLVVDYTSSYNAIL 152

Query: 75  GRPTLHGLRAVASTYHQVLKFPTEEGVGAVYGEQKLSRECYFMALKNVDR 125
           GR T+H L+A+ STYHQ +KFPT  GVG + GEQ++SRECY+ +++  DR
Sbjct: 153 GRSTMHMLKAIPSTYHQSMKFPTSGGVGKIKGEQRVSRECYYTSMRGNDR 202

[Close]

BLAST of Lag0001259 vs. NCBI nr
Match: XP_022144467.1 (uncharacterized protein LOC111014147 [Momordica charantia])

HSP 1 Score: 123.2 bits (308), Expect = 3.6e-24
Identity = 58/121 (47.93%), Postives = 85/121 (70.25%), Query Frame = 0


Query: 4   AWRASRRVQRHEAGERSPKTEPHAASGFWREKISPGGSVELPVAFGEGLQTVTRMINFLV 63
           +W A + +   + GE+  K+ P    GF  E++ P G +E PV FG G ++VT+M++ LV
Sbjct: 132 SWTAYKAM---DLGEKVLKSSPAPLVGFGGERVIPEGRIEXPVTFGSGPKSVTKMVDXLV 191

Query: 64  VDCVPAYNAILGRPTLHGLRAVASTYHQVLKFPTEEGVGAVYGEQKLSRECYFMALKNVD 123
           V+   +YNAILGRPT+H LRA+ STYHQ +KFPT  GVG + GEQ++SRECY+ ++++ D
Sbjct: 192 VNYTSSYNAILGRPTMHMLRAIPSTYHQSMKFPTPGGVGEIKGEQRVSRECYYTSMRDND 249

Query: 124 R 125
           R
Sbjct: 252 R 249

[Close]

BLAST of Lag0001259 vs. NCBI nr
Match: XP_022150858.1 (uncharacterized protein LOC111018902 [Momordica charantia])

HSP 1 Score: 121.7 bits (304), Expect = 1.0e-23
Identity = 55/110 (50.00%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 15  EAGERSPKTEPHAASGFWREKISPGGSVELPVAFGEGLQTVTRMINFLVVDCVPAYNAIL 74
           + GER  K+ P    GF  E + P G +ELPV FG G +++T+M++FLVVD   + NAIL
Sbjct: 150 DLGERGLKSSPAPLVGFGGEWVIPEGRIELPVTFGSGPKSITKMVDFLVVDYASSCNAIL 209

Query: 75  GRPTLHGLRAVASTYHQVLKFPTEEGVGAVYGEQKLSRECYFMALKNVDR 125
           GRPT+H L+A+ S YHQ +KFPT  G+G + GEQ++SRECY+ ++K  D+
Sbjct: 210 GRPTMHMLKAIPSRYHQSIKFPTPGGIGEIKGEQRVSRECYYASMKGNDK 259

[Close]

BLAST of Lag0001259 vs. NCBI nr
Match: XP_022155186.1 (uncharacterized protein LOC111022321 [Momordica charantia])

HSP 1 Score: 120.2 bits (300), Expect = 3.0e-23
Identity = 58/121 (47.93%), Postives = 84/121 (69.42%), Query Frame = 0


Query: 4   AWRASRRVQRHEAGERSPKTEPHAASGFWREKISPGGSVELPVAFGEGLQTVTRMINFLV 63
           +W A + +   + GE+  K+ P    GF  E++   G +ELPV FG G ++VT+M++FLV
Sbjct: 85  SWTAYKAM---DLGEKVLKSSPAPLVGFGGERVILEGRIELPVTFGSGPKSVTKMVDFLV 144

Query: 64  VDCVPAYNAILGRPTLHGLRAVASTYHQVLKFPTEEGVGAVYGEQKLSRECYFMALKNVD 123
           V+   +YNAILGRPT+H L+A+ STYHQ  KFPT  GVG + GEQ++SRECY  ++++ D
Sbjct: 145 VNYTSSYNAILGRPTMHMLKAIPSTYHQSXKFPTXGGVGEIKGEQRVSRECYXTSMRDND 202

Query: 124 R 125
           R
Sbjct: 205 R 202

[Close]

BLAST of Lag0001259 vs. NCBI nr
Match: XP_022150028.1 (uncharacterized protein LOC111018300 [Momordica charantia])

HSP 1 Score: 115.5 bits (288), Expect = 7.4e-22
Identity = 52/110 (47.27%), Postives = 76/110 (69.09%), Query Frame = 0


Query: 15  EAGERSPKTEPHAASGFWREKISPGGSVELPVAFGEGLQTVTRMINFLVVDCVPAYNAIL 74
           + GER  K+ P +   F  E++ P G  EL V FG G +++T +++FLV+D   +YNAIL
Sbjct: 185 DLGERGRKSSPASLVRFRGERVIPEGRTELTVTFGSGPKSITTIMDFLVIDYASSYNAIL 244

Query: 75  GRPTLHGLRAVASTYHQVLKFPTEEGVGAVYGEQKLSRECYFMALKNVDR 125
           GRPT+H L+A+ STYHQ + FPT  G+G +  EQ++SRECY+ ++K  DR
Sbjct: 245 GRPTIHMLKAIPSTYHQSINFPTHGGIGEIKEEQRVSRECYYTSMKGNDR 294

[Close]

BLAST of Lag0001259 vs. ExPASy TrEMBL
Match: A0A6J1DXV4 (uncharacterized protein LOC111025147 OS=Momordica charantia OX=3673 GN=LOC111025147 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.0e-24
Identity = 57/110 (51.82%), Postives = 80/110 (72.73%), Query Frame = 0


Query: 15  EAGERSPKTEPHAASGFWREKISPGGSVELPVAFGEGLQTVTRMINFLVVDCVPAYNAIL 74
           + GE+  K+ P    GF RE++ P G +EL V FG G ++VT+M++FLVVD   +YNAIL
Sbjct: 93  DLGEKVLKSSPAPLIGFGRERVIPEGRIELHVTFGSGPKSVTKMMDFLVVDYTSSYNAIL 152

Query: 75  GRPTLHGLRAVASTYHQVLKFPTEEGVGAVYGEQKLSRECYFMALKNVDR 125
           GR T+H L+A+ STYHQ +KFPT  GVG + GEQ++SRECY+ +++  DR
Sbjct: 153 GRSTMHMLKAIPSTYHQSMKFPTSGGVGKIKGEQRVSRECYYTSMRGNDR 202

[Close]

BLAST of Lag0001259 vs. ExPASy TrEMBL
Match: A0A6J1CTS4 (uncharacterized protein LOC111014147 OS=Momordica charantia OX=3673 GN=LOC111014147 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.7e-24
Identity = 58/121 (47.93%), Postives = 85/121 (70.25%), Query Frame = 0


Query: 4   AWRASRRVQRHEAGERSPKTEPHAASGFWREKISPGGSVELPVAFGEGLQTVTRMINFLV 63
           +W A + +   + GE+  K+ P    GF  E++ P G +E PV FG G ++VT+M++ LV
Sbjct: 132 SWTAYKAM---DLGEKVLKSSPAPLVGFGGERVIPEGRIEXPVTFGSGPKSVTKMVDXLV 191

Query: 64  VDCVPAYNAILGRPTLHGLRAVASTYHQVLKFPTEEGVGAVYGEQKLSRECYFMALKNVD 123
           V+   +YNAILGRPT+H LRA+ STYHQ +KFPT  GVG + GEQ++SRECY+ ++++ D
Sbjct: 192 VNYTSSYNAILGRPTMHMLRAIPSTYHQSMKFPTPGGVGEIKGEQRVSRECYYTSMRDND 249

Query: 124 R 125
           R
Sbjct: 252 R 249

[Close]

BLAST of Lag0001259 vs. ExPASy TrEMBL
Match: A0A6J1DAK4 (uncharacterized protein LOC111018902 OS=Momordica charantia OX=3673 GN=LOC111018902 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 5.0e-24
Identity = 55/110 (50.00%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 15  EAGERSPKTEPHAASGFWREKISPGGSVELPVAFGEGLQTVTRMINFLVVDCVPAYNAIL 74
           + GER  K+ P    GF  E + P G +ELPV FG G +++T+M++FLVVD   + NAIL
Sbjct: 150 DLGERGLKSSPAPLVGFGGEWVIPEGRIELPVTFGSGPKSITKMVDFLVVDYASSCNAIL 209

Query: 75  GRPTLHGLRAVASTYHQVLKFPTEEGVGAVYGEQKLSRECYFMALKNVDR 125
           GRPT+H L+A+ S YHQ +KFPT  G+G + GEQ++SRECY+ ++K  D+
Sbjct: 210 GRPTMHMLKAIPSRYHQSIKFPTPGGIGEIKGEQRVSRECYYASMKGNDK 259

[Close]

BLAST of Lag0001259 vs. ExPASy TrEMBL
Match: A0A6J1DQY2 (uncharacterized protein LOC111022321 OS=Momordica charantia OX=3673 GN=LOC111022321 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.5e-23
Identity = 58/121 (47.93%), Postives = 84/121 (69.42%), Query Frame = 0


Query: 4   AWRASRRVQRHEAGERSPKTEPHAASGFWREKISPGGSVELPVAFGEGLQTVTRMINFLV 63
           +W A + +   + GE+  K+ P    GF  E++   G +ELPV FG G ++VT+M++FLV
Sbjct: 85  SWTAYKAM---DLGEKVLKSSPAPLVGFGGERVILEGRIELPVTFGSGPKSVTKMVDFLV 144

Query: 64  VDCVPAYNAILGRPTLHGLRAVASTYHQVLKFPTEEGVGAVYGEQKLSRECYFMALKNVD 123
           V+   +YNAILGRPT+H L+A+ STYHQ  KFPT  GVG + GEQ++SRECY  ++++ D
Sbjct: 145 VNYTSSYNAILGRPTMHMLKAIPSTYHQSXKFPTXGGVGEIKGEQRVSRECYXTSMRDND 202

Query: 124 R 125
           R
Sbjct: 205 R 202

[Close]

BLAST of Lag0001259 vs. ExPASy TrEMBL
Match: A0A2N9F9R7 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11814 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.8e-22
Identity = 81/221 (36.65%), Postives = 112/221 (50.68%), Query Frame = 0


Query: 30  GFWREKISPGGSVELPVAFGEGLQTVTRMINFLVVDCVPAYNAILGRPTLHGLRAVASTY 89
           GF  +KI P G V LP+  G   +TV++ ++FLVV+C  AYNAI+GRPTL+ LRAV STY
Sbjct: 614 GFTGDKICPVGIVTLPIMVGTHPKTVSKTVDFLVVNCPSAYNAIIGRPTLNRLRAVTSTY 673

Query: 90  HQVLKFPTEEGVGAVYGEQKLSRECYFMALKNVDRRVQARSLKALEERPGDTLGLPKL-- 149
           H +LKFPTE G+G V G+Q  +RECY  +L + DR+  +   + +  +P   L   +L  
Sbjct: 674 HLLLKFPTEHGIGEVRGDQVAARECYLASLGSGDRQTMSIEEQKVLVKPSGELATIELED 733

Query: 150 -----------FPQKSDEQSHL-KRGPGTPEASPSF----FPRRVYAP--LGRADRLGKR 209
                       P   ++++HL KR     E         F R V+ P  L     + K 
Sbjct: 734 GRPEEDDQNWSRPSSKNKENHLSKRNNAIMEEVDKLLAANFIREVFYPDWLANVVMVKKN 793

Query: 210 PG------DSLDLPKFFPEDEYSSWRIFSTSQSSYNLGHML 225
            G      D  DL K  P+D +   RI     S+   GH L
Sbjct: 794 TGKWRMCVDFTDLNKACPKDSFPLPRIDQLVDST--AGHKL 832

The following BLAST results are available for this feature:

BLAST of Lag0001259 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158687.1	2.1e-24	51.82	uncharacterized protein LOC111025147 [Momordica charantia]	[more]
XP_022144467.1	3.6e-24	47.93	uncharacterized protein LOC111014147 [Momordica charantia]	[more]
XP_022150858.1	1.0e-23	50.00	uncharacterized protein LOC111018902 [Momordica charantia]	[more]
XP_022155186.1	3.0e-23	47.93	uncharacterized protein LOC111022321 [Momordica charantia]	[more]
XP_022150028.1	7.4e-22	47.27	uncharacterized protein LOC111018300 [Momordica charantia]	[more]

BLAST of Lag0001259 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0001259 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DXV4	1.0e-24	51.82	uncharacterized protein LOC111025147 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1CTS4	1.7e-24	47.93	uncharacterized protein LOC111014147 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1DAK4	5.0e-24	50.00	uncharacterized protein LOC111018902 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1DQY2	1.5e-23	47.93	uncharacterized protein LOC111022321 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A2N9F9R7	2.8e-22	36.65	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11814 PE=4 SV=1	[more]

BLAST of Lag0001259 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001259.1	Lag0001259.1	mRNA