Lag0001258 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001258
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr4: 28060983 .. 28061285 (-)
RNA-Seq Expression	Lag0001258
Synteny	Lag0001258

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCGAAAAAGCAGATGGGCAAGACCCATGTCGAATGGCTCGTAGAAATCGAAGAGCAGTTACTCTATTTGATAGAAGTCCCGGATTCAATTCGGTTCTTGGAATCTCGCCTAAAAGAGATTGCAACCAAGACGGACACAATAGATGTGGTATCTGGCCGCATGGATGGAATTCCCATCAAAGAGTTAATAATGAGGGTTGAGAACCTCGAAGAAAAAGCTACAAGACCTAGTAGCTTCGAGCGTGGGGAAGCTCGACGGGCTCTGTCGCCCAGATGGAGGAGCGTGTCGATGGCTTAG

mRNA sequence

ATGTCGTCGAAAAAGCAGATGGGCAAGACCCATGTCGAATGGCTCGTAGAAATCGAAGAGCAGTTACTCTATTTGATAGAAGTCCCGGATTCAATTCGGTTCTTGGAATCTCGCCTAAAAGAGATTGCAACCAAGACGGACACAATAGATGTGGTATCTGGCCGCATGGATGGAATTCCCATCAAAGAGTTAATAATGAGGGTTGAGAACCTCGAAGAAAAAGCTACAAGACCTAGTAGCTTCGAGCGTGGGGAAGCTCGACGGGCTCTGTCGCCCAGATGGAGGAGCGTGTCGATGGCTTAG

Coding sequence (CDS)

ATGTCGTCGAAAAAGCAGATGGGCAAGACCCATGTCGAATGGCTCGTAGAAATCGAAGAGCAGTTACTCTATTTGATAGAAGTCCCGGATTCAATTCGGTTCTTGGAATCTCGCCTAAAAGAGATTGCAACCAAGACGGACACAATAGATGTGGTATCTGGCCGCATGGATGGAATTCCCATCAAAGAGTTAATAATGAGGGTTGAGAACCTCGAAGAAAAAGCTACAAGACCTAGTAGCTTCGAGCGTGGGGAAGCTCGACGGGCTCTGTCGCCCAGATGGAGGAGCGTGTCGATGGCTTAG

Protein sequence

MSSKKQMGKTHVEWLVEIEEQLLYLIEVPDSIRFLESRLKEIATKTDTIDVVSGRMDGIPIKELIMRVENLEEKATRPSSFERGEARRALSPRWRSVSMA

Homology

[Close]

BLAST of Lag0001258 vs. NCBI nr
Match: XP_022155185.1 (uncharacterized protein LOC111022320 [Momordica charantia])

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-19
Identity = 50/86 (58.14%), Postives = 72/86 (83.72%), Query Frame = 0


Query: 1  MSSKKQMGKTHVEWLVEIEEQLLYLIEVPDSIRFLESRLKEIATKTDTIDVVSGRMDGIP 60
          MS+ KQ+GK+H++ LVEIEE+LL+L E+PD++R++ESRL EI+TK D IDVV+ R+DG+ 
Sbjct: 1  MSTTKQLGKSHIDRLVEIEERLLFLREIPDNLRYVESRLDEISTKADGIDVVNARIDGLA 60

Query: 61 IKELIMRVENLEEKATRPSSFERGEA 87
          I+EL++RVE LE+K  R  + ERGE+
Sbjct: 61 IRELMLRVETLEDKVKRTDNLERGES 86

[Close]

BLAST of Lag0001258 vs. NCBI nr
Match: XP_022154605.1 (uncharacterized protein LOC111021829 [Momordica charantia])

HSP 1 Score: 105.9 bits (263), Expect = 2.0e-19
Identity = 52/86 (60.47%), Postives = 68/86 (79.07%), Query Frame = 0


Query: 1  MSSKKQMGKTHVEWLVEIEEQLLYLIEVPDSIRFLESRLKEIATKTDTIDVVSGRMDGIP 60
          MS+ KQ+ K+HV+ LVEIEEQLLYL EVPDS+R LE+R+ E + K   ID V+ R+DG+P
Sbjct: 1  MSATKQLSKSHVDRLVEIEEQLLYLREVPDSLRLLEARVDEFSEKFGEIDAVNARVDGLP 60

Query: 61 IKELIMRVENLEEKATRPSSFERGEA 87
          I+++ MRVE  E KATRP SFERG++
Sbjct: 61 IQDIAMRVETXESKATRPGSFERGDS 86

[Close]

BLAST of Lag0001258 vs. NCBI nr
Match: XP_022150099.1 (uncharacterized protein LOC111018360 [Momordica charantia])

HSP 1 Score: 105.5 bits (262), Expect = 2.7e-19
Identity = 52/86 (60.47%), Postives = 68/86 (79.07%), Query Frame = 0


Query: 1  MSSKKQMGKTHVEWLVEIEEQLLYLIEVPDSIRFLESRLKEIATKTDTIDVVSGRMDGIP 60
          MS+ KQ+ K+HV+ LVEIEEQLLYL EVPD +R LE+R+ E + K   ID V+ R+DG+P
Sbjct: 1  MSTTKQLSKSHVDRLVEIEEQLLYLREVPDFLRLLEARVDEFSEKFGEIDAVNARIDGLP 60

Query: 61 IKELIMRVENLEEKATRPSSFERGEA 87
          I+++ MRVE LE KATRP SFERG++
Sbjct: 61 IQDIAMRVETLESKATRPGSFERGDS 86

[Close]

BLAST of Lag0001258 vs. NCBI nr
Match: KAA0037518.1 (uncharacterized protein E6C27_scaffold277G001300 [Cucumis melo var. makuwa] >TYK01993.1 uncharacterized protein E5676_scaffold808G001060 [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-17
Identity = 52/88 (59.09%), Postives = 69/88 (78.41%), Query Frame = 0


Query: 1  MSSKKQMGKTHVEWLVEIEEQLLYLIEVPDSIRFLESRLKEIATKTDTIDVVSGRMDGIP 60
          MSS    GK   + LVEIEEQ+LYL+EVPDSIR+LESR++EI+ K DTID V+GR++G+P
Sbjct: 1  MSSSNPSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVEEISEKADTIDAVAGRVEGLP 60

Query: 61 IKELIMRVENLEE--KATRPSSFERGEA 87
          I+EL+ RV+ LEE   A R  ++ERGE+
Sbjct: 61 IQELLARVDALEENTNARRTINYERGES 88

[Close]

BLAST of Lag0001258 vs. NCBI nr
Match: KAA0061346.1 (uncharacterized protein E6C27_scaffold749G00290 [Cucumis melo var. makuwa] >TYK14699.1 uncharacterized protein E5676_scaffold692G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 1.9e-17
Identity = 52/88 (59.09%), Postives = 68/88 (77.27%), Query Frame = 0


Query: 1  MSSKKQMGKTHVEWLVEIEEQLLYLIEVPDSIRFLESRLKEIATKTDTIDVVSGRMDGIP 60
          MSS    GK   + LVEIEEQ+LYL+EVPDSIR+LESR+ EI+ K DTID V+GR++G+P
Sbjct: 1  MSSSNPSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVDEISEKADTIDAVAGRVEGLP 60

Query: 61 IKELIMRVENLEE--KATRPSSFERGEA 87
          I+EL+ RV+ LEE   A R  ++ERGE+
Sbjct: 61 IQELLARVDALEENTNARRTINYERGES 88

The following BLAST results are available for this feature:

BLAST of Lag0001258 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155185.1	1.6e-19	58.14	uncharacterized protein LOC111022320 [Momordica charantia]	[more]
XP_022154605.1	2.0e-19	60.47	uncharacterized protein LOC111021829 [Momordica charantia]	[more]
XP_022150099.1	2.7e-19	60.47	uncharacterized protein LOC111018360 [Momordica charantia]	[more]
KAA0037518.1	1.1e-17	59.09	uncharacterized protein E6C27_scaffold277G001300 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0061346.1	1.9e-17	59.09	uncharacterized protein E6C27_scaffold749G00290 [Cucumis melo var. makuwa] >TYK1...	[more]

BLAST of Lag0001258 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001258.1	Lag0001258.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003676	nucleic acid binding