Lag0001237 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001237
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr4: 27551221 .. 27552559 (-)
RNA-Seq Expression	Lag0001237
Synteny	Lag0001237

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATGCGTCAAATCCTATGGAAAAATGTTGGGCCTTTGAGGGTGGAGCTCGGCCTTGGCTTCTGGATGGTCGGCCTCGGCCTTGGCATGAGATCAACCAGCTCCTCTGCGTTGTTTGCTTGCTTGTTTTCCATCCCAAGGGTACCTGCACTCAGTTGGGGACTTGGGGAGGTTAAGGGCATGCGTCAACCTCTCCTCAAGTGTTGTGTCCATCCTAGGGGCACGTACACTCTTTCGGGGAAAAAGCTTGGGGAGGCCTAGGAAGTTCCCGGGCCTCTCTTCAAGCATCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCTCGGGTCTCTCTTCAAGCATCGTGGTCATCCCAGGGGTGCGTACACTCTTCTAGGGAAAAACTTGGGGAGGCCTAGGAAGTTCCCGGGCCTCTCTTCAAGCATCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCTCGGGCCTCTCTTCAAGCATCGTGGTCATCCTAGGGGTGCGTACACTTTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCTCGGGCCTCTCTTCAAGCATTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCTTAGGAAGTTCTCGGGCCTCTCTTCAAGCAACATGGTCATCCCAAGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCCCGGGCCTCTCTTCAAGCATCGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCTCGGGCCTCTCTTCAAGTATCGTGGTCATCCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGAAGTTCTCGGGCCTCTCTTCAAGCATTATGGTCATCCTAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCCTAGGAAGTACTCGGGCCTCTCTTCAAGCATCGTGGCCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCTCGGGCCTTTCTTCAAGCATCGTGGCCATCACAGGGGTGCGTACACTCTTTTGGGGAAAAGTTTGGAATCTAATCTCGAGGGTGCGTACACTCAGTCGAGGTCTTGGAATCTCATCTCGAGGGTGCGTACACTCAGTCGAGGTCTTGGAATTTCATCTTAAGGGTGCGTACACTCATTCGAGGTCTTGGAATCTCATCTCGACGGTGCGTACACTCGATCGAGGGCTTGAAAAGCTAGGTTGA

mRNA sequence

ATGGAGATGCGTCAAATCCTATGGAAAAATGTTGGGCCTTTGAGGGTGGAGCTCGGCCTTGGCTTCTGGATGGTCGGCCTCGGCCTTGGCATGAGATCAACCAGCTCCTCTGCGTTGTTTGCTTGCTTGTTTTCCATCCCAAGGGTACCTGCACTCAGTTGGGGACTTGGGGAGGTTAAGGGCATGCGTCAACCTCTCCTCAAGTGTTGTGTCCATCCTAGGGGCACGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCTCGGGTCTCTCTTCAAGCATCGTGGTCATCCCAGGGGAAGTTCTCGGGCCTCTCTTCAAGCATCGTGGTCATCCTAGGGGTGCGTACACTTTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCTCGGGCCTCTCTTCAAGCATTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCTTAGGAAGTTCTCGGGCCTCTCTTCAAGCAACATGGTCATCCCAAGGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCTCGGGCCTCTCTTCAAGTATCGTGGTCATCCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGAAGTTCTCGGGCCTCTCTTCAAGCATTATGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCTCGGGCCTTTCTTCAAGCATCGTGGCCATCACAGGGGTGCGTACACTCTTTTGGGGAAAAGTTTGGAATCTAATCTCGAGGGTGCGTACACTCAGTCGAGGTCTTGGAATCTCATCTCGAGGGTGCGTACACTCAGTCGAGGTCTTGGAATTTCATCTTAAGGGTGCGTACACTCATTCGAGGTCTTGGAATCTCATCTCGACGGTGCGTACACTCGATCGAGGGCTTGAAAAGCTAGGTTGA

Coding sequence (CDS)

ATGGAGATGCGTCAAATCCTATGGAAAAATGTTGGGCCTTTGAGGGTGGAGCTCGGCCTTGGCTTCTGGATGGTCGGCCTCGGCCTTGGCATGAGATCAACCAGCTCCTCTGCGTTGTTTGCTTGCTTGTTTTCCATCCCAAGGGTACCTGCACTCAGTTGGGGACTTGGGGAGGTTAAGGGCATGCGTCAACCTCTCCTCAAGTGTTGTGTCCATCCTAGGGGCACGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCTCGGGTCTCTCTTCAAGCATCGTGGTCATCCCAGGGGAAGTTCTCGGGCCTCTCTTCAAGCATCGTGGTCATCCTAGGGGTGCGTACACTTTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCTCGGGCCTCTCTTCAAGCATTGTGGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCTTAGGAAGTTCTCGGGCCTCTCTTCAAGCAACATGGTCATCCCAAGGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCTCGGGCCTCTCTTCAAGTATCGTGGTCATCCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGAAGTTCTCGGGCCTCTCTTCAAGCATTATGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAGTTCTCGGGCCTTTCTTCAAGCATCGTGGCCATCACAGGGGTGCGTACACTCTTTTGGGGAAAAGTTTGGAATCTAATCTCGAGGGTGCGTACACTCAGTCGAGGTCTTGGAATCTCATCTCGAGGGTGCGTACACTCAGTCGAGGTCTTGGAATTTCATCTTAAGGGTGCGTACACTCATTCGAGGTCTTGGAATCTCATCTCGACGGTGCGTACACTCGATCGAGGGCTTGAAAAGCTAGGTTGA

Protein sequence

MEMRQILWKNVGPLRVELGLGFWMVGLGLGMRSTSSSALFACLFSIPRVPALSWGLGEVKGMRQPLLKCCVHPRGTGAYTLLGKSLGRPRKFSGLSSSIVVIPGEVLGPLFKHRGHPRGAYTFLGKSLGRPRKFSGLSSSIVVIPGVRTLFWGKAWGGLGSSRASLQATWSSQGGAYTLLGKSLGRPRKFSGLSSSIVVIPRGAYTLLGKSLGRSSRASLQALWGAYTLLGKSLGRPRKFSGLSSSIVAITGVRTLFWGKVWNLISRVRTLSRGLGISSRGCVHSVEVLEFHLKGAYTHSRSWNLISTVRTLDRGLEKLG

Homology

The following BLAST results are available for this feature:

BLAST of Lag0001237 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0001237 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0001237 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0001237 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017956	AT hook, DNA-binding motif	SMART	SM00384	AT_hook_2	coord: 83..95 e-value: 18.0 score: 8.2 coord: 231..243 e-value: 18.0 score: 8.2 coord: 181..193 e-value: 18.0 score: 8.2 coord: 125..137 e-value: 18.0 score: 8.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001237.1	Lag0001237.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding