Lag0001215 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0001215
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr4: 26733564 .. 26733920 (-)
RNA-Seq ExpressionLag0001215
SyntenyLag0001215
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGGGACTTTAATGAGATTACTAGTAACAGTGAGAAGAATGGAGGTGCTTTGAGATCTGAGTCACTTATGCAGGAGTTCAGAGAGATTATAGATATTTGTGGTCTCATTGACCCTGGTTTCATTGGTCCAATGTTCACTTGGTGCAACAATCATTTTAATAGTGACTTGATTTGGGAACGGTTAGATAGGTTTCTGATTAATGTTCAAATGCAAGATTGGTGCAATGTTTTCCAGGTTCACCATTTGCCACGAATAGCCTCAAACCATCGACCGATTCTTGCAAAATGGAAAGAAGAACCTCCAGATCAGAGAGCAGGGAAGAGATACATCAAGAGGTTTGAGGAAGCTTAG

mRNA sequence

ATGGGAGGGGACTTTAATGAGATTACTAGTAACAGTGAGAAGAATGGAGGTGCTTTGAGATCTGAGTCACTTATGCAGGAGTTCAGAGAGATTATAGATATTTGTGGTCTCATTGACCCTGGTTTCATTGGTCCAATGTTCACTTGGTGCAACAATCATTTTAATAGTGACTTGATTTGGGAACGGTTAGATAGGTTTCTGATTAATGTTCAAATGCAAGATTGGTGCAATGTTTTCCAGGTTCACCATTTGCCACGAATAGCCTCAAACCATCGACCGATTCTTGCAAAATGGAAAGAAGAACCTCCAGATCAGAGAGCAGGGAAGAGATACATCAAGAGGTTTGAGGAAGCTTAG

Coding sequence (CDS)

ATGGGAGGGGACTTTAATGAGATTACTAGTAACAGTGAGAAGAATGGAGGTGCTTTGAGATCTGAGTCACTTATGCAGGAGTTCAGAGAGATTATAGATATTTGTGGTCTCATTGACCCTGGTTTCATTGGTCCAATGTTCACTTGGTGCAACAATCATTTTAATAGTGACTTGATTTGGGAACGGTTAGATAGGTTTCTGATTAATGTTCAAATGCAAGATTGGTGCAATGTTTTCCAGGTTCACCATTTGCCACGAATAGCCTCAAACCATCGACCGATTCTTGCAAAATGGAAAGAAGAACCTCCAGATCAGAGAGCAGGGAAGAGATACATCAAGAGGTTTGAGGAAGCTTAG

Protein sequence

MGGDFNEITSNSEKNGGALRSESLMQEFREIIDICGLIDPGFIGPMFTWCNNHFNSDLIWERLDRFLINVQMQDWCNVFQVHHLPRIASNHRPILAKWKEEPPDQRAGKRYIKRFEEA
Homology
BLAST of Lag0001215 vs. NCBI nr
Match: XP_022155286.1 (uncharacterized protein LOC111022423 [Momordica charantia])

HSP 1 Score: 124.8 bits (312), Expect = 5.0e-25
Identity = 62/120 (51.67%), Postives = 80/120 (66.67%), Query Frame = 0

Query: 1   MGGDFNEITSNSEKNGGALRSESLMQEFREIIDICGLIDPGFIGPMFTWCNNHFNSDLIW 60
           +GGDFNEI  NSEK  G  R +SLMQ F++ +D+CGL+DPGF+G +FTWC+ H     IW
Sbjct: 43  LGGDFNEILFNSEKLEGVPRRQSLMQNFKDTLDLCGLLDPGFVGDIFTWCDGHKYRQPIW 102

Query: 61  ERLDRFLINVQMQDWCNVFQVHHLPRIASNHRPILAKW---KEEPPDQRAGKRYIKRFEE 118
           ERLDRFLIN  +       ++ HL  +AS+HRPILA+W    E    +R G+R   RFEE
Sbjct: 103 ERLDRFLINTAIFQIQETLEIRHLEFLASDHRPILAEWLGVGEATVGRRKGRR-PHRFEE 161

BLAST of Lag0001215 vs. NCBI nr
Match: XP_030970102.1 (uncharacterized protein LOC115990406 [Quercus lobata])

HSP 1 Score: 105.5 bits (262), Expect = 3.1e-19
Identity = 49/95 (51.58%), Postives = 64/95 (67.37%), Query Frame = 0

Query: 3   GDFNEITSNSEKNGGALRSESLMQEFREIIDICGLIDPGFIGPMFTWCNNHFNSDLIWER 62
           GDFNEIT   EK+GGA+R E  MQ+FR+ +D+CGL D GF G  FTWCN  +N  L+W R
Sbjct: 136 GDFNEITRVDEKSGGAIRPEKQMQDFRDCLDVCGLKDLGFSGLPFTWCNRRYNEALVWVR 195

Query: 63  LDRFLINVQMQDWCNVF---QVHHLPRIASNHRPI 95
           LDR +  V   DW   F   ++HHLP  +S+H+P+
Sbjct: 196 LDRAVATV---DWILKFPTARLHHLPGSSSDHKPL 227

BLAST of Lag0001215 vs. NCBI nr
Match: XP_030923017.1 (uncharacterized protein LOC115949892 [Quercus lobata])

HSP 1 Score: 104.4 bits (259), Expect = 7.0e-19
Identity = 49/95 (51.58%), Postives = 63/95 (66.32%), Query Frame = 0

Query: 3   GDFNEITSNSEKNGGALRSESLMQEFREIIDICGLIDPGFIGPMFTWCNNHFNSDLIWER 62
           GDFNEIT   EK+GGA+R E  MQ+FR+ +D+CGL D GF G  FTWCN  +N  L+W R
Sbjct: 136 GDFNEITRVDEKSGGAIRPEKQMQDFRDCLDVCGLKDLGFSGLPFTWCNRRYNEALVWVR 195

Query: 63  LDRFLINVQMQDWCNVF---QVHHLPRIASNHRPI 95
           LDR    V   DW   F   ++HHLP  +S+H+P+
Sbjct: 196 LDR---AVATADWILKFPTARLHHLPGSSSDHKPL 227

BLAST of Lag0001215 vs. NCBI nr
Match: XP_023896927.1 (uncharacterized protein LOC112008817 [Quercus suber])

HSP 1 Score: 104.4 bits (259), Expect = 7.0e-19
Identity = 48/95 (50.53%), Postives = 64/95 (67.37%), Query Frame = 0

Query: 3   GDFNEITSNSEKNGGALRSESLMQEFREIIDICGLIDPGFIGPMFTWCNNHFNSDLIWER 62
           GDFNEIT   EK+GGA+R E  MQ+FR+ +D+CGL D G+ G  FTWCN  +N  L+W R
Sbjct: 102 GDFNEITRVDEKSGGAVRPEKQMQDFRDCLDVCGLKDLGYSGLPFTWCNRRYNEALVWVR 161

Query: 63  LDRFLINVQMQDWCNVF---QVHHLPRIASNHRPI 95
           LDR +  V   DW   F   ++HHLP  +S+H+P+
Sbjct: 162 LDRVVATV---DWILKFPTARLHHLPGSSSDHKPL 193

BLAST of Lag0001215 vs. NCBI nr
Match: XP_030930974.1 (uncharacterized protein LOC115956830 [Quercus lobata])

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-18
Identity = 45/92 (48.91%), Postives = 64/92 (69.57%), Query Frame = 0

Query: 4   DFNEITSNSEKNGGALRSESLMQEFREIIDICGLIDPGFIGPMFTWCNNHFNSDLIWERL 63
           DFNEI  ++EK+GG++RS+S MQ FR+++D CG +D GF+GP FTW  ++     +WERL
Sbjct: 47  DFNEILRSNEKHGGSMRSQSQMQLFRDVVDECGFLDLGFVGPQFTWSKHYATGHSVWERL 106

Query: 64  DRFLINVQMQDWCNVFQVHHLPRIASNHRPIL 96
           DR L N ++       QVHHL   +S+HRP+L
Sbjct: 107 DRGLANYELFTRFAGAQVHHLHSDSSDHRPLL 138

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155286.15.0e-2551.67uncharacterized protein LOC111022423 [Momordica charantia][more]
XP_030970102.13.1e-1951.58uncharacterized protein LOC115990406 [Quercus lobata][more]
XP_030923017.17.0e-1951.58uncharacterized protein LOC115949892 [Quercus lobata][more]
XP_023896927.17.0e-1950.53uncharacterized protein LOC112008817 [Quercus suber][more]
XP_030930974.11.6e-1848.91uncharacterized protein LOC115956830 [Quercus lobata][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10Endonuclease/exonuclease/phosphatasecoord: 1..97
e-value: 4.8E-12
score: 48.1
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 2..97
NoneNo IPR availablePANTHERPTHR33710BNAC02G09200D PROTEINcoord: 2..102
NoneNo IPR availablePANTHERPTHR33710:SF35SUBFAMILY NOT NAMEDcoord: 2..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0001215.1Lag0001215.1mRNA