Lag0001214 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001214
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotransposon protein
Location	chr4: 26704382 .. 26705022 (-)
RNA-Seq Expression	Lag0001214
Synteny	Lag0001214

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGGAGCAGACAAACAACCTAAACATATATGGACGAGGTTGGAGGAGGCAAAGTTGGTTGAAAGCCTCGTGGAGCTTGTACATGATGGTAGATGGCGAGGTGATAATGGAACGTTCAGACCTGGCTACCATGCACAACTGCAGCGTATGTTGAAATAAAAAATCCCGACATGTAGGATCAATTCAACATCAACAATTGACTCTAAGGTACGGTCGTTGAAAAGATAGTACACTGTGATTAATGATATGTTGGGTCCTGATGTAGCAGATTCGGGTGGAACGAAGAGTATAAGTGCATTGTGGCGAATAAAGAAGTCTACGATGAGTGGGTGAAGGTATGGTCAGTATTCATTAATTGGTTTAATGCATGTATATTCCAACATTGATAACATCCACTGTCGTATATGCAGTCCCACTCAGCTGCAAAGGGTCTACTGAACAAGCCATTTCCTCATTACGAGGAACTCACCATCGTGTTCGGCAAAATCGGGCTAGTGGATCGAGGTGTGATGTCCCAGCGGAATAAGCTGAAGAAAGCCCCTCAGTGGACTTGGAGGGGGATTCCAACTTCCAGGGACATAGGATTATTATATCCCCATCCCTCCAGTAGAAAATTTGGCCACGGACGTCGAGTTTGA

mRNA sequence

ATGGTAGGAGCAGACAAACAACCTAAACATATATGGACGAGGTTGGAGGAGGCAAAGTTGGTTGAAAGCCTCGTGGAGCTTGTACATGATGGTAGATGGCGAGGTGATAATGGAACGTTCAGACCTGGCTACCATGCACAACTGCAGCGTATATTCGGGTGGAACGAAGAGTATAAGTGCATTGTGGCGAATAAAGAAGTCTACGATGAGTGGGTGAAGTCCCACTCAGCTGCAAAGGGTCTACTGAACAAGCCATTTCCTCATTACGAGGAACTCACCATCGTGTTCGGCAAAATCGGGCTAGTGGATCGAGGTGTGATGTCCCAGCGGAATAAGCTGAAGAAAGCCCCTCAGTGGACTTGGAGGGGGATTCCAACTTCCAGGGACATAGGATTATTATATCCCCATCCCTCCAGTAGAAAATTTGGCCACGGACGTCGAGTTTGA

Coding sequence (CDS)

ATGGTAGGAGCAGACAAACAACCTAAACATATATGGACGAGGTTGGAGGAGGCAAAGTTGGTTGAAAGCCTCGTGGAGCTTGTACATGATGGTAGATGGCGAGGTGATAATGGAACGTTCAGACCTGGCTACCATGCACAACTGCAGCGTATATTCGGGTGGAACGAAGAGTATAAGTGCATTGTGGCGAATAAAGAAGTCTACGATGAGTGGGTGAAGTCCCACTCAGCTGCAAAGGGTCTACTGAACAAGCCATTTCCTCATTACGAGGAACTCACCATCGTGTTCGGCAAAATCGGGCTAGTGGATCGAGGTGTGATGTCCCAGCGGAATAAGCTGAAGAAAGCCCCTCAGTGGACTTGGAGGGGGATTCCAACTTCCAGGGACATAGGATTATTATATCCCCATCCCTCCAGTAGAAAATTTGGCCACGGACGTCGAGTTTGA

Protein sequence

MVGADKQPKHIWTRLEEAKLVESLVELVHDGRWRGDNGTFRPGYHAQLQRIFGWNEEYKCIVANKEVYDEWVKSHSAAKGLLNKPFPHYEELTIVFGKIGLVDRGVMSQRNKLKKAPQWTWRGIPTSRDIGLLYPHPSSRKFGHGRRV

Homology

[Close]

BLAST of Lag0001214 vs. NCBI nr
Match: KAA0035563.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 139.4 bits (350), Expect = 2.5e-29
Identity = 64/107 (59.81%), Postives = 78/107 (72.90%), Query Frame = 0


Query: 1   MVGADKQPKHIWTRLEEAKLVESLVELVHDGRWRGDNGTFRPGYHAQLQRI--------- 60
           M  +++ P+H+WTR EE  LVE L+ELV  G W+ DNGTFRPGY AQL R+         
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMWRRNYLDVS 60

Query: 61  -FGWNEEYKCIVANKEVYDEWVKSHSAAKGLLNKPFPHYEELTIVFG 98
            FGWN+E KCIVA KE++D WV+SH AAKGLLNK FP+Y+ELT VFG
Sbjct: 61  GFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKSFPYYDELTYVFG 107

[Close]

BLAST of Lag0001214 vs. NCBI nr
Match: KAA0035912.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 137.9 bits (346), Expect = 7.1e-29
Identity = 63/111 (56.76%), Postives = 79/111 (71.17%), Query Frame = 0


Query: 1   MVGADKQPKHIWTRLEEAKLVESLVELVHDGRWRGDNGTFRPGYHAQLQRI--------- 60
           M  +++ P+H+WT+ EE  LVE L+ELV  G W+ DNGTFRPGY AQL+           
Sbjct: 1   MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKLDNGTFRPGYLAQLRTFQAIAEMRGP 60

Query: 61  ----FGWNEEYKCIVANKEVYDEWVKSHSAAKGLLNKPFPHYEELTIVFGK 99
               FGWN+E KCIVA KE++D WV+SH AAKGLLNKPFP+Y+ELT VFG+
Sbjct: 61  ACSSFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGR 111

[Close]

BLAST of Lag0001214 vs. NCBI nr
Match: KAA0032859.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 137.5 bits (345), Expect = 9.3e-29
Identity = 64/113 (56.64%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 1   MVGADKQPKHIWTRLEEAKLVESLVELVHDGRWRGDNGTFRPGYHAQLQRI--------- 60
           M  +++  +H+WTR EE  LVE L+ELV  G W+ DNGTFRPGY AQL R+         
Sbjct: 1   MSTSNRALRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  ------FGWNEEYKCIVANKEVYDEWVKSHSAAKGLLNKPFPHYEELTIVFGK 99
                 FGWN+E KCIVA KE++D WV+SH AAKGLLNKPFP+Y+ELT VFG+
Sbjct: 61  GPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGR 113

[Close]

BLAST of Lag0001214 vs. NCBI nr
Match: KAA0056563.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 137.5 bits (345), Expect = 9.3e-29
Identity = 63/111 (56.76%), Postives = 78/111 (70.27%), Query Frame = 0


Query: 1   MVGADKQPKHIWTRLEEAKLVESLVELVHDGRWRGDNGTFRPGYHAQLQRI--------- 60
           M  +++ P+H+WTR EE  LVE L+ELV  G W+ DNGTFRPGY AQL+           
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLRTFQAIAEMRGP 60

Query: 61  ----FGWNEEYKCIVANKEVYDEWVKSHSAAKGLLNKPFPHYEELTIVFGK 99
               F WN+E KCIVA KE++D WV+SH AAKGLLNKPFP+Y+ELT VFG+
Sbjct: 61  ACSGFRWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGR 111

[Close]

BLAST of Lag0001214 vs. NCBI nr
Match: TYK16368.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 6.0e-28
Identity = 62/113 (54.87%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 1   MVGADKQPKHIWTRLEEAKLVESLVELVHDGRWRGDNGTFRPGYHAQLQRI--------- 60
           M  +++ P+H+ T+ EE  LVE L+ELV  G W+ DNGTFRPGY AQL R+         
Sbjct: 1   MSTSNRAPRHVCTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  ------FGWNEEYKCIVANKEVYDEWVKSHSAAKGLLNKPFPHYEELTIVFGK 99
                 FGWN+E KCI+A KE++D WV+SH AAKGLLNKPFP+Y+ELT VFG+
Sbjct: 61  GPTCSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGR 113

The following BLAST results are available for this feature:

BLAST of Lag0001214 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035563.1	2.5e-29	59.81	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0035912.1	7.1e-29	56.76	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0032859.1	9.3e-29	56.64	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0056563.1	9.3e-29	56.76	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK16368.1	6.0e-28	54.87	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0001214 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 6..51
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 52..98 coord: 6..51
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 52..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001214.1	Lag0001214.1	mRNA