Lag0001195 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001195
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr4: 26437234 .. 26437774 (+)
RNA-Seq Expression	Lag0001195
Synteny	Lag0001195

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTATGAAAAGATTACGAAATTCATACCTTCTTCCTATTCTCGAGCCTTCGCTCATGCTATTTATCAGCGCGATGTAAAGATTCATTAGTTATCGAACCCTACAACCCCTACCGATTCGGCCGCCAGTTTGGCTTTTATCAAGACATACCTAATGACTTAGGAGAAGTTTTCCCCTAGTCACCTTGGAAAACATTTTATACCATGGCGGGTTTGCCTGCGAACCACTGCGGAGTTTCAAATATTTCTTCCAGCTCGTACATTGAATCCTCAAGACCATGTCACTTCACGCTATCGAAGTTGGTGGTCTGAAAAGTATGATAATTACCTAGGGACGACATAAGTAAGTTGGTTGACAGTATCTTCCCTCTCGAGCCCAACCAAGCTACCTAAAAAACGACTCTAAATTTGGGGGAAAAGAACTCCGTCTGCTCAGGTTGCCAATCTCTAACGATTCAACTGACGAAGATAGTCAAACAGCACTGGAGATCGACACTGGAAAAGAGCCAAAAGACCCAAGAAAGCTTCTGATCTCATGA

mRNA sequence

ATGAAGTATGAAAAGATTACGAAATTCATACCTTCTTCCTATTCTCGAGCCTTCGCTCATGCTATTTATCAGCGCGATGAGAAGTTTTCCCCTAGTCACCTTGGAAAACATTTTATACCATGGCGGGTTTGCCTGCGAACCACTGCGGAGTTTCAAATATTTCTTCCAGCTCGTACATTGAATCCTCAAGACCATGTCACTTCACGCTATCGAAGTTGGTGGTCTGAAAAGTTGCCAATCTCTAACGATTCAACTGACGAAGATAGTCAAACAGCACTGGAGATCGACACTGGAAAAGAGCCAAAAGACCCAAGAAAGCTTCTGATCTCATGA

Coding sequence (CDS)

ATGAAGTATGAAAAGATTACGAAATTCATACCTTCTTCCTATTCTCGAGCCTTCGCTCATGCTATTTATCAGCGCGATGAGAAGTTTTCCCCTAGTCACCTTGGAAAACATTTTATACCATGGCGGGTTTGCCTGCGAACCACTGCGGAGTTTCAAATATTTCTTCCAGCTCGTACATTGAATCCTCAAGACCATGTCACTTCACGCTATCGAAGTTGGTGGTCTGAAAAGTTGCCAATCTCTAACGATTCAACTGACGAAGATAGTCAAACAGCACTGGAGATCGACACTGGAAAAGAGCCAAAAGACCCAAGAAAGCTTCTGATCTCATGA

Protein sequence

MKYEKITKFIPSSYSRAFAHAIYQRDEKFSPSHLGKHFIPWRVCLRTTAEFQIFLPARTLNPQDHVTSRYRSWWSEKLPISNDSTDEDSQTALEIDTGKEPKDPRKLLIS

Homology

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BLAST of Lag0001195 vs. NCBI nr
Match: KAA0050733.1 (uncharacterized protein E6C27_scaffold560G00370 [Cucumis melo var. makuwa] >TYJ95697.1 uncharacterized protein E5676_scaffold726G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 5.9e-04
Identity = 26/75 (34.67%), Postives = 39/75 (52.00%), Query Frame = 0


Query: 6   ITKFIPSSYSRAFA---HAIYQRDEKFSPSHLGKHFIPWRVCLRTTAEFQIFLPARTLNP 65
           I K  P  + R F       Y   EK   ++L      W +C+R +   Q++LPA TL+P
Sbjct: 323 IHKGNPCRFGRQFGFYQDVPYDLSEKIPKANLANVRYHWMICVRESTLSQVYLPAPTLHP 382

Query: 66  QDHVTSRYRSWWSEK 78
            +H+TS Y++WW  K
Sbjct: 383 CNHITSHYKAWWLAK 397

The following BLAST results are available for this feature:

BLAST of Lag0001195 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050733.1	5.9e-04	34.67	uncharacterized protein E6C27_scaffold560G00370 [Cucumis melo var. makuwa] >TYJ9...	[more]

BLAST of Lag0001195 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001195.1	Lag0001195.1	mRNA