Lag0001194 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001194
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	PMD domain-containing protein
Location	chr4: 26425157 .. 26425583 (+)
RNA-Seq Expression	Lag0001194
Synteny	Lag0001194

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTGTTTTGCAGAACATATTGTCTCTGAAAAGACGTACCTCGTTCTCCTGAAAGACAACAATCAACCCATGAGAAGCGGACTCAGCTTCTTAGTAGAAGAGTCTAAGACTGGACGTCTTGCATACCATTTCTGATTGGTCCGTAGAGAGGCCTCTAGACCAAGATTCTAAGGCTTGGTTTCTAGAATCTTCAATCCATACACAAAATCCTAATCAACATCCAGAGATGACGTTAGGGCGCCGAATAATTGATGGATCAATTCGTTGGGAATCCGCCTTGAAAATTTCAAGCGAATTTCTTTTCATTCCTCGCTATTGGGAGTGGTTGGAACTTGTCGTTGGTCGGAGTGAAGAGGTGCTTCAGACTGCTCATTTATTGGATGCAGTGGTGGCTTCCCTTTACACTTACAATCGAAACAACTGA

mRNA sequence

ATGGTGTGTTTTGCAGAACATATTGTCTCTGAAAAGACGTACCTCGTTCTCCTGAAAGACAACAATCAACCCATGAGAAGCGGACTCAGCTTCTTAGTAGAAGAGTCTAAGACTGGACAGATGACGTTAGGGCGCCGAATAATTGATGGATCAATTCGTTGGGAATCCGCCTTGAAAATTTCAAGCGAATTTCTTTTCATTCCTCGCTATTGGGAGTGGTTGGAACTTGTCGTTGGTCGGAGTGAAGAGGTGCTTCAGACTGCTCATTTATTGGATGCAGTGGTGGCTTCCCTTTACACTTACAATCGAAACAACTGA

Coding sequence (CDS)

ATGGTGTGTTTTGCAGAACATATTGTCTCTGAAAAGACGTACCTCGTTCTCCTGAAAGACAACAATCAACCCATGAGAAGCGGACTCAGCTTCTTAGTAGAAGAGTCTAAGACTGGACAGATGACGTTAGGGCGCCGAATAATTGATGGATCAATTCGTTGGGAATCCGCCTTGAAAATTTCAAGCGAATTTCTTTTCATTCCTCGCTATTGGGAGTGGTTGGAACTTGTCGTTGGTCGGAGTGAAGAGGTGCTTCAGACTGCTCATTTATTGGATGCAGTGGTGGCTTCCCTTTACACTTACAATCGAAACAACTGA

Protein sequence

MVCFAEHIVSEKTYLVLLKDNNQPMRSGLSFLVEESKTGQMTLGRRIIDGSIRWESALKISSEFLFIPRYWEWLELVVGRSEEVLQTAHLLDAVVASLYTYNRNN

Homology

[Close]

BLAST of Lag0001194 vs. NCBI nr
Match: TYK19639.1 (hypothetical protein E5676_scaffold242G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 5.4e-15
Identity = 53/151 (35.10%), Postives = 69/151 (45.70%), Query Frame = 0


Query: 1   MVCFAEHIVSEKTYLVLLKDNNQPMRSGLSFLVEESKTG--------------------- 60
           MV F E  +S   +LV+L D NQP   GLS +VE+   G                     
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKLWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  -------------------------QMTLGRRIIDGSIRWESALKISSEFLFIPRYWEWL 106
                                     +TLG+R+I+G  RW +  K+  EF F   YWEWL
Sbjct: 61  VPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL 120

[Close]

BLAST of Lag0001194 vs. NCBI nr
Match: KAA0041618.1 (hypothetical protein E6C27_scaffold93G00910 [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 5.4e-15
Identity = 53/151 (35.10%), Postives = 69/151 (45.70%), Query Frame = 0


Query: 1   MVCFAEHIVSEKTYLVLLKDNNQPMRSGLSFLVEESKTG--------------------- 60
           MV F E  +S   +LV+L D NQP   GLS +VE+   G                     
Sbjct: 17  MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKLWAGAFADHWPRLDNNSVLPRLSVE 76

Query: 61  -------------------------QMTLGRRIIDGSIRWESALKISSEFLFIPRYWEWL 106
                                     +TLG+R+I+G  RW +  K+  EF F   YWEWL
Sbjct: 77  VPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL 136

[Close]

BLAST of Lag0001194 vs. NCBI nr
Match: KAA0047478.1 (hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-14
Identity = 53/151 (35.10%), Postives = 69/151 (45.70%), Query Frame = 0


Query: 1   MVCFAEHIVSEKTYLVLLKDNNQPMRSGLSFLVEESKTG--------------------- 60
           MV F E  +S   +LV+L D NQP   GLS +VE+   G                     
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  -------------------------QMTLGRRIIDGSIRWESALKISSEFLFIPRYWEWL 106
                                     +TLG+R+I+G  RW +  K+  EF F   YWEWL
Sbjct: 61  VPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL 120

[Close]

BLAST of Lag0001194 vs. NCBI nr
Match: TYK04516.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 2.1e-14
Identity = 52/151 (34.44%), Postives = 69/151 (45.70%), Query Frame = 0


Query: 1   MVCFAEHIVSEKTYLVLLKDNNQPMRSGLSFLVEESKTG--------------------- 60
           MV F E  +S   +L++L D NQP   GLS +VE+S  G                     
Sbjct: 17  MVYFTERFLSGVRHLIILSDRNQPREDGLSLIVEKSWAGAFADHWPHLDNNSVLPRLSVE 76

Query: 61  -------------------------QMTLGRRIIDGSIRWESALKISSEFLFIPRYWEWL 106
                                     +TLG+R+I+G  RW +  K+  EF F   YWEWL
Sbjct: 77  IPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTMTKVPGEFCFTDCYWEWL 136

[Close]

BLAST of Lag0001194 vs. NCBI nr
Match: KAA0065375.1 (hypothetical protein E6C27_scaffold17G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 2.1e-14
Identity = 53/151 (35.10%), Postives = 69/151 (45.70%), Query Frame = 0


Query: 1   MVCFAEHIVSEKTYLVLLKDNNQPMRSGLSFLVEESKTG--------------------- 60
           MV F E  +S   +LV+L D NQP   GLS +VE+   G                     
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  -------------------------QMTLGRRIIDGSIRWESALKISSEFLFIPRYWEWL 106
                                     +TLG+R+I+G  RW +  K+  EF F   YWEWL
Sbjct: 61  IPLSEGKSAWILQSSIHHEAPNSGRALTLGQRLIEGQTRWGTVTKVPREFCFTDCYWEWL 120

The following BLAST results are available for this feature:

BLAST of Lag0001194 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK19639.1	5.4e-15	35.10	hypothetical protein E5676_scaffold242G00260 [Cucumis melo var. makuwa]	[more]
KAA0041618.1	5.4e-15	35.10	hypothetical protein E6C27_scaffold93G00910 [Cucumis melo var. makuwa]	[more]
KAA0047478.1	1.6e-14	35.10	hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa]	[more]
TYK04516.1	2.1e-14	34.44	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0065375.1	2.1e-14	35.10	hypothetical protein E6C27_scaffold17G00370 [Cucumis melo var. makuwa]	[more]

BLAST of Lag0001194 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36607	1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4	coord: 40..104
None	No IPR available	PANTHER	PTHR36607:SF19	SUBFAMILY NOT NAMED	coord: 40..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001194.1	Lag0001194.1	mRNA