Lag0001191 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001191
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr4: 26318631 .. 26319824 (-)
RNA-Seq Expression	Lag0001191
Synteny	Lag0001191

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAGAGACGAGCAGGCAGACGTAGTGTCTGAAAGAGGAGACAAGCAGGACCAAGAAGCTCGTGTTGAGGTAATCATGCCCGAACCACCAAAACGTCGTCGCATAAAACGGAAGGCCGGCCATATTCAGGTAATTCGGACTGATACCCCATCACCACCATCATCAGATTCTGAGAGAGAAAAGGCAGAGCAAGAGGAAAGAGAGAAAAAGAAGCTGAGGACAAAGAAAGAGAAGAAACAGAGAAGAAGACCGAGGAAGAGCAGTTGCTCAGGCGCAGGGCAGAGAAGGGCAAAAATGTTGCTGAAGCATCGGAGGAACACGATGCACTAGAAGAACAGCAGTTACAATTTGATCGCTTCGTCAACAATTTTCCAGAGCAAAATACGCTGAGCTTCTGAAAAGGGATTTCTTGTTCGAGCGCGGTTTCAGCGGTGATCTTCCACAGTTTCTGAGGACCGGTATTGCTGACCTGGCTGGGAGCTGTTTTGTGCAAAGTCTGAGTCTGTAAACGCACAGGTGGTGCGTGAATTTTATGCTAACATTGTTAAGGAGGATGTTTCCTGGTAATTGTTCGAGGAGTCGAGGTGGATTGGAGTCCTAGTGCTATCAACGCATTGTACAATCTTCAGAACTTCCCCCATGCAGCATATAATGAGATGGCTGTGGCACCATCTGATGAGCAACTAAGTGATGCTGTGCGGGAGGTAGGAATTGAAGGGGCACAGTGGCAGTTATCCAAGACTCAAAGAGGACATTCCAGTCGGCTTATTTGAAAAGGGAAGCGAACACGTGGATGGGATTTATTAGACAGAAGATGCTTCCAACAACACATGACTCGACAATCTCCAGGGAACGAGTTCTCCTAGCTTTTGCCATCTTACGGTCTCTCAGTATTAACGTAGGGAGGATCATTGCGAATGAGATTTCTGGATGTTGGAAAAAGAAGGTGGGGAAACTATTCTTTCCGAACACAATCACGATGTTGTGCAGAAGAGCAGGGGTTCCAGTGGATGAGGGAGATGTGATCTGTTTGATAAGGGGATCATAGACACACCCAATTTGGCACGACTCCAGCGTGTGCAAGAGGTACGTCAAGGTGGGCTTATCTACGACATCAACACGATTCTAGAACGACTGGCACTTTCGGCCAGTAGGCAGGAGTTTGCTGAGAGGCAGACTTTAACCTTCTGA

mRNA sequence

ATGGTAAGAGACGAGCAGGCAGACGTAGTGTCTGAAAGAGGAGACAAGCAGGACCAAGAAGCTCGTGTTGAGGTAATCATGCCCGAACCACCAAAACGTCGTCGCATAAAACGGAAGGCCGGCCATATTCAGGTAATTCGGACTGATACCCCATCACCACCATCATCAGATTCTGAGAGAGAAAAGGCAGAGCAAGAGGAAAGAGAGAAAAAGAAGCTGAGGACAAAGAAAGAGAAGAAACAGAGAAGAAGACCGAGGAAGAGCAGTTGCTCAGGCGCAGGGCAGAGAAGGGCAAAAATAGCAAAATACGCTGAGCTTCTGAAAAGGGATTTCTTGTTCGAGCGCGGTTTCAGCGGTGATCTTCCACAGTTTCTGAGGACCGGTATTGCTGACCTGGCTGGGAGCTGTTTTGTGCAAAGAGTCGAGGTGGATTGGAGTCCTAGTGCTATCAACGCATTGTACAATCTTCAGAACTTCCCCCATGCAGCATATAATGAGATGGCTGTGGCACCATCTGATGAGCAACTAAGTGATGCTGTGCGGGAGAAGATGCTTCCAACAACACATGACTCGACAATCTCCAGGGAACGAGTTCTCCTAGCTTTTGCCATCTTACGGTCTCTCAGTATTAACGTAGGGAGGATCATTGCGAATGAGATTTCTGGATGTTGGAAAAAGAAGGGGATCATAGACACACCCAATTTGGCACGACTCCAGCGTGTGCAAGAGGTACGTCAAGGTGGGCTTATCTACGACATCAACACGATTCTAGAACGACTGGCACTTTCGGCCAGTAGGCAGGAGTTTGCTGAGAGGCAGACTTTAACCTTCTGA

Coding sequence (CDS)

ATGGTAAGAGACGAGCAGGCAGACGTAGTGTCTGAAAGAGGAGACAAGCAGGACCAAGAAGCTCGTGTTGAGGTAATCATGCCCGAACCACCAAAACGTCGTCGCATAAAACGGAAGGCCGGCCATATTCAGGTAATTCGGACTGATACCCCATCACCACCATCATCAGATTCTGAGAGAGAAAAGGCAGAGCAAGAGGAAAGAGAGAAAAAGAAGCTGAGGACAAAGAAAGAGAAGAAACAGAGAAGAAGACCGAGGAAGAGCAGTTGCTCAGGCGCAGGGCAGAGAAGGGCAAAAATAGCAAAATACGCTGAGCTTCTGAAAAGGGATTTCTTGTTCGAGCGCGGTTTCAGCGGTGATCTTCCACAGTTTCTGAGGACCGGTATTGCTGACCTGGCTGGGAGCTGTTTTGTGCAAAGAGTCGAGGTGGATTGGAGTCCTAGTGCTATCAACGCATTGTACAATCTTCAGAACTTCCCCCATGCAGCATATAATGAGATGGCTGTGGCACCATCTGATGAGCAACTAAGTGATGCTGTGCGGGAGAAGATGCTTCCAACAACACATGACTCGACAATCTCCAGGGAACGAGTTCTCCTAGCTTTTGCCATCTTACGGTCTCTCAGTATTAACGTAGGGAGGATCATTGCGAATGAGATTTCTGGATGTTGGAAAAAGAAGGGGATCATAGACACACCCAATTTGGCACGACTCCAGCGTGTGCAAGAGGTACGTCAAGGTGGGCTTATCTACGACATCAACACGATTCTAGAACGACTGGCACTTTCGGCCAGTAGGCAGGAGTTTGCTGAGAGGCAGACTTTAACCTTCTGA

Protein sequence

MVRDEQADVVSERGDKQDQEARVEVIMPEPPKRRRIKRKAGHIQVIRTDTPSPPSSDSEREKAEQEEREKKKLRTKKEKKQRRRPRKSSCSGAGQRRAKIAKYAELLKRDFLFERGFSGDLPQFLRTGIADLAGSCFVQRVEVDWSPSAINALYNLQNFPHAAYNEMAVAPSDEQLSDAVREKMLPTTHDSTISRERVLLAFAILRSLSINVGRIIANEISGCWKKKGIIDTPNLARLQRVQEVRQGGLIYDINTILERLALSASRQEFAERQTLTF

Homology

[Close]

BLAST of Lag0001191 vs. NCBI nr
Match: TYJ96034.1 (hypothetical protein E5676_scaffold2612G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 4.2e-06
Identity = 44/154 (28.57%), Postives = 70/154 (45.45%), Query Frame = 0


Query: 104 AELLKRDFLFERG---FSGDLPQFL-------------------RTGIADLAGSCFVQRV 163
           A+ + + F+ E+G   + G +P+FL                   R G+ DL    ++   
Sbjct: 7   AKRVSKLFIVEKGLYIYRGTMPEFLASPIRALKWKRFFQGVNAIRPGVVDLFYRGYINAK 66

Query: 164 E---------VDWSPSAINALYNLQNFPHAAYNEMAVAPSDEQLSDAVREKMLPTTHDST 223
           E         VD+ P AINALY L+N+                    +R  ++PT HD+T
Sbjct: 67  EHYAEVKGKRVDFGPEAINALYGLENY-------------------EIRHNIMPTRHDNT 126

Query: 224 ISRERVLLAFAILRSLSINVGRIIANEISGCWKK 227
           IS ER++L + I+  + +NVG II N ++  W K
Sbjct: 127 ISLERIMLLYCIMMEIPVNVGEIIYNHLT-TWVK 140

[Close]

BLAST of Lag0001191 vs. NCBI nr
Match: KAA0038892.1 (hypothetical protein E6C27_scaffold1170G00580 [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 3.5e-05
Identity = 44/163 (26.99%), Postives = 69/163 (42.33%), Query Frame = 0


Query: 104 AELLKRDFLFERG---FSGDLPQFL-------------------RTGIADLAGSCFVQRV 163
           A+ + + F+ E+G   + G +P+FL                   R G+ DL    ++   
Sbjct: 7   AKRVSKLFIVEKGLYIYRGTMPEFLTSPIRALKWKRFFQGVNAIRPGVVDLFYRGYINAK 66

Query: 164 E---------VDWSPSAINALYNLQNFPHAAYNEMAVAPSDEQLSDAVREKMLPTTHDST 223
           E         VD+ P AINALY L+N+                    +R  ++PT HD+T
Sbjct: 67  EHYAEVKGKRVDFGPEAINALYGLENY-------------------EMRHNIMPTRHDNT 126

Query: 224 ISRERVLLAFAILRSLSINVGRIIANEISGCWKKKGIIDTPNL 236
           IS ER++L + I+  + +NVG     EI       G+   P L
Sbjct: 127 ISMERIMLLYCIMMEIPVNVGVPRVREIPQIEVSDGVCTEPTL 150

[Close]

BLAST of Lag0001191 vs. NCBI nr
Match: XP_038876674.1 (chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida])

HSP 1 Score: 59.7 bits (143), Expect = 4.6e-05
Identity = 60/254 (23.62%), Postives = 117/254 (46.06%), Query Frame = 0


Query: 17  QDQEARVEVIMPEPPKRRRIKRKAGHIQVIRTDTPSPPSSDSEREKAEQEEREKKKLRTK 76
           ++ E ++EV+  +  K++  +RKAG   V   +       + E+ K E+EER  K+ + K
Sbjct: 160 EEVETQLEVVEEKKKKKKSKRRKAGEF-VEEFEREEKEEEEEEKNKKEEEERRLKEEKEK 219

Query: 77  KEKKQRRRPRKSSCSGAG------QRRAKIAKYAELLKRDFLFERGFSGD--------LP 136
           K +  RR  +K             QR+ +  K  +  +     E+G S +        + 
Sbjct: 220 KCEANRRCLQKKKGKELAEREKEEQRKEREKKQRQAARLALAKEKGKSIEKSSKPASVVR 279

Query: 137 QFLRTGIADLAGSCFVQRVEVDWSPSAINALYNLQNFPHAAYNEMAVAPSDEQLSDA--- 196
            F R  +     +  ++R  V +S   IN +Y +++ P+A+ N++   P+++Q+ DA   
Sbjct: 280 DFYRGRLHGTRDAVTLKRETVSFSARDINEIYQMKDNPYASGNKIIDDPTEQQMEDALQV 339

Query: 197 ---------------------------------VREKMLPTTHDSTISRERVLLAFAILR 221
                                            V+++++ TTHD T+SR+RV+  + I+R
Sbjct: 340 LMQLGMKWSVSLKGVSTLASKSLLLEGRLWVYLVKKRLISTTHDKTVSRDRVMATYCIVR 399

[Close]

BLAST of Lag0001191 vs. NCBI nr
Match: PON59596.1 (hypothetical protein PanWU01x14_158080 [Parasponia andersonii])

HSP 1 Score: 56.6 bits (135), Expect = 3.9e-04
Identity = 32/82 (39.02%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 155 NLQNFPHAAYNEMAVAPSDEQLSDAVREKMLPTTHDSTISRERVLLAFAILRSLSINVGR 214
           N+QN P  A  + A+ P+ +     ++ ++LPTTH  T+S++R+LL +++L   SINVGR
Sbjct: 28  NIQNRPLNA-EKGALTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLYSMLTGKSINVGR 87

Query: 215 IIANEISGC-WKKKGIIDTPNL 236
           +I +EI  C  +K G +  P+L
Sbjct: 88  MIHSEIRACAARKSGALFFPSL 108

[Close]

BLAST of Lag0001191 vs. ExPASy TrEMBL
Match: A0A5D3BAP9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2612G00500 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-06
Identity = 44/154 (28.57%), Postives = 70/154 (45.45%), Query Frame = 0


Query: 104 AELLKRDFLFERG---FSGDLPQFL-------------------RTGIADLAGSCFVQRV 163
           A+ + + F+ E+G   + G +P+FL                   R G+ DL    ++   
Sbjct: 7   AKRVSKLFIVEKGLYIYRGTMPEFLASPIRALKWKRFFQGVNAIRPGVVDLFYRGYINAK 66

Query: 164 E---------VDWSPSAINALYNLQNFPHAAYNEMAVAPSDEQLSDAVREKMLPTTHDST 223
           E         VD+ P AINALY L+N+                    +R  ++PT HD+T
Sbjct: 67  EHYAEVKGKRVDFGPEAINALYGLENY-------------------EIRHNIMPTRHDNT 126

Query: 224 ISRERVLLAFAILRSLSINVGRIIANEISGCWKK 227
           IS ER++L + I+  + +NVG II N ++  W K
Sbjct: 127 ISLERIMLLYCIMMEIPVNVGEIIYNHLT-TWVK 140

[Close]

BLAST of Lag0001191 vs. ExPASy TrEMBL
Match: A0A5A7T5Y0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1170G00580 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.7e-05
Identity = 44/163 (26.99%), Postives = 69/163 (42.33%), Query Frame = 0


Query: 104 AELLKRDFLFERG---FSGDLPQFL-------------------RTGIADLAGSCFVQRV 163
           A+ + + F+ E+G   + G +P+FL                   R G+ DL    ++   
Sbjct: 7   AKRVSKLFIVEKGLYIYRGTMPEFLTSPIRALKWKRFFQGVNAIRPGVVDLFYRGYINAK 66

Query: 164 E---------VDWSPSAINALYNLQNFPHAAYNEMAVAPSDEQLSDAVREKMLPTTHDST 223
           E         VD+ P AINALY L+N+                    +R  ++PT HD+T
Sbjct: 67  EHYAEVKGKRVDFGPEAINALYGLENY-------------------EMRHNIMPTRHDNT 126

Query: 224 ISRERVLLAFAILRSLSINVGRIIANEISGCWKKKGIIDTPNL 236
           IS ER++L + I+  + +NVG     EI       G+   P L
Sbjct: 127 ISMERIMLLYCIMMEIPVNVGVPRVREIPQIEVSDGVCTEPTL 150

[Close]

BLAST of Lag0001191 vs. ExPASy TrEMBL
Match: A0A2P5CEY2 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_158080 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-04
Identity = 32/82 (39.02%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 155 NLQNFPHAAYNEMAVAPSDEQLSDAVREKMLPTTHDSTISRERVLLAFAILRSLSINVGR 214
           N+QN P  A  + A+ P+ +     ++ ++LPTTH  T+S++R+LL +++L   SINVGR
Sbjct: 28  NIQNRPLNA-EKGALTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLYSMLTGKSINVGR 87

Query: 215 IIANEISGC-WKKKGIIDTPNL 236
           +I +EI  C  +K G +  P+L
Sbjct: 88  MIHSEIRACAARKSGALFFPSL 108

[Close]

BLAST of Lag0001191 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.2e-04
Identity = 41/135 (30.37%), Postives = 64/135 (47.41%), Query Frame = 0


Query: 137 FVQRVEVDWSPSAINALYNL-----------QNF----------------------PHAA 196
           +V+ V+V WS  AINA++ L           QN                          A
Sbjct: 103 YVRGVQVSWSEEAINAVFGLGDPVDEHSEFIQNITQQDLITVLETVAAAGAEWNVSAQGA 162

Query: 197 YN--EMAVAPSDEQLSDAVREKMLPTTHDSTISRERVLLAFAILRSLSINVGRIIANEIS 236
           Y     A+ P+ +     ++ ++LPTTH  T+S++R+LL  ++L   SINVGR+I +EI 
Sbjct: 163 YTCIRSALTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIR 222

[Close]

BLAST of Lag0001191 vs. ExPASy TrEMBL
Match: A0A5D2B9F5 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D09G053200v1 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.2e-04
Identity = 27/47 (57.45%), Postives = 33/47 (70.21%), Query Frame = 0


Query: 183 KMLPTTHDSTISRERVLLAFAILRSLSINVGRIIANEISGCWKKKGI 230
           K +P +H STI  ER+LL +AIL   SINVG+II NEI  C KKK +
Sbjct: 143 KFMPISHSSTILMERMLLLYAILTEKSINVGKIILNEIHDCAKKKAV 189

The following BLAST results are available for this feature:

BLAST of Lag0001191 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ96034.1	4.2e-06	28.57	hypothetical protein E5676_scaffold2612G00500 [Cucumis melo var. makuwa]	[more]
KAA0038892.1	3.5e-05	26.99	hypothetical protein E6C27_scaffold1170G00580 [Cucumis melo var. makuwa]	[more]
XP_038876674.1	4.6e-05	23.62	chromatin assembly factor 1 subunit A-like, partial [Benincasa hispida]	[more]
PON59596.1	3.9e-04	39.02	hypothetical protein PanWU01x14_158080 [Parasponia andersonii]	[more]

BLAST of Lag0001191 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0001191 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BAP9	2.0e-06	28.57	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T5Y0	1.7e-05	26.99	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A2P5CEY2	1.9e-04	39.02	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_158080 PE...	[more]
A0A2P5BCG4	7.2e-04	30.37	Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]
A0A5D2B9F5	7.2e-04	57.45	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D09G053200v1 PE=...	[more]

BLAST of Lag0001191 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 56..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001191.1	Lag0001191.1	mRNA