Lag0001173 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0001173
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr4: 26012459 .. 26012893 (+)
RNA-Seq ExpressionLag0001173
SyntenyLag0001173
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTATATGAACACCTTCAAGAATGTTCTTAATCCTCCTGGTTTTGCCCTTCAAACTCAAGAAAATAAAAAATTAGAGGATCTGGTTGGAGCTTTTATTGCAGAGTCTAGTAACAGTACAACCAAATTGGAGGAGGCAGTCATTGCCATTAACTCAACAGTGAATGGCCACAGTGCTGTCATCAAGAACATTGAGACTCAACTGGGGCAGCTGGTAAGTGTTGTAAGTACCATGAATAAAGGTAAGGCCCCAGTTGAGCAAGAGAAAACCCAGATGGAGTACTGTAAGGCAATCACTGTGCATCAGGAGAAAGTTGAAGAGGAACCTGATTCTGAGGAGTATGACACTCCTACTGGGAAGCTGAGGAGGACATATCATCAGATGAAGCTGAAAAGCCTGAACCTGAACCTCCTATTCCTTCTCCCACCTTGA

mRNA sequence

ATGTGTTATATGAACACCTTCAAGAATGTTCTTAATCCTCCTGGTTTTGCCCTTCAAACTCAAGAAAATAAAAAATTAGAGGATCTGGTTGGAGCTTTTATTGCAGAGTCTAGTAACAGTACAACCAAATTGGAGGAGGCAGTCATTGCCATTAACTCAACAGTGAATGGCCACAGTGCTGTCATCAAGAACATTGAGACTCAACTGGGGCAGCTGGTAAGTGTTGTAAGTACCATGAATAAAGGTAAGGCCCCAGTTGAGCAAGAGAAAACCCAGATGGAGTACTGTAAGGCAATCACTGTGCATCAGGAGAAAGTTGAAGAGGAACCTGATTCTGAGGAGTATGACACTCCTACTGGGAAGCTGAGGAGGACATATCATCAGATGAAGCTGAAAAGCCTGAACCTGAACCTCCTATTCCTTCTCCCACCTTGA

Coding sequence (CDS)

ATGTGTTATATGAACACCTTCAAGAATGTTCTTAATCCTCCTGGTTTTGCCCTTCAAACTCAAGAAAATAAAAAATTAGAGGATCTGGTTGGAGCTTTTATTGCAGAGTCTAGTAACAGTACAACCAAATTGGAGGAGGCAGTCATTGCCATTAACTCAACAGTGAATGGCCACAGTGCTGTCATCAAGAACATTGAGACTCAACTGGGGCAGCTGGTAAGTGTTGTAAGTACCATGAATAAAGGTAAGGCCCCAGTTGAGCAAGAGAAAACCCAGATGGAGTACTGTAAGGCAATCACTGTGCATCAGGAGAAAGTTGAAGAGGAACCTGATTCTGAGGAGTATGACACTCCTACTGGGAAGCTGAGGAGGACATATCATCAGATGAAGCTGAAAAGCCTGAACCTGAACCTCCTATTCCTTCTCCCACCTTGA

Protein sequence

MCYMNTFKNVLNPPGFALQTQENKKLEDLVGAFIAESSNSTTKLEEAVIAINSTVNGHSAVIKNIETQLGQLVSVVSTMNKGKAPVEQEKTQMEYCKAITVHQEKVEEEPDSEEYDTPTGKLRRTYHQMKLKSLNLNLLFLLPP
Homology
BLAST of Lag0001173 vs. NCBI nr
Match: XP_022868848.1 (uncharacterized protein LOC111388394 [Olea europaea var. sylvestris])

HSP 1 Score: 70.9 bits (172), Expect = 1.0e-08
Identity = 44/131 (33.59%), Postives = 69/131 (52.67%), Query Frame = 0

Query: 1   MCYMNTFKNVLNPPGFALQTQENK-KLEDLVGAFIAESSNSTTKLEEAVIAINSTVNGHS 60
           + Y N    +  PPGF  Q  + K  LED++G FI+E+ +   K E  +  I + V+   
Sbjct: 126 LSYGNNRNTLQPPPGFNTQNSDGKPPLEDILGTFISETRSRFNKNELRLDNIETHVSNMG 185

Query: 61  AVIKNIETQLGQLVSVVSTMNKGKAPVEQEKTQMEYCKAITVHQEKVEEEPDSEEYDTPT 120
           A +KN+E Q+GQL + + +  KGK P + E    E+C AIT+   K+ EE   ++   PT
Sbjct: 186 ATMKNLEVQIGQLATSIKSQQKGKFPSDTEVNPREHCNAITLRSGKMVEESKPKKIVVPT 245

Query: 121 GKLRRTYHQMK 131
             +  T  + K
Sbjct: 246 SDVIVTDERQK 256

BLAST of Lag0001173 vs. NCBI nr
Match: XP_022843226.1 (uncharacterized protein LOC111366761 [Olea europaea var. sylvestris])

HSP 1 Score: 69.3 bits (168), Expect = 3.0e-08
Identity = 42/120 (35.00%), Postives = 66/120 (55.00%), Query Frame = 0

Query: 1   MCYMNTFKNVLNPPGFALQTQENK-KLEDLVGAFIAESSNSTTKLEEAVIAINSTVNGHS 60
           + Y N    +  PPGF  Q  + K  LED++G FI+E+ +   K E  +  I + V+   
Sbjct: 443 LSYGNNRNTLQPPPGFNTQNSDGKPPLEDILGTFISETRSRFNKNELRLDNIETHVSKIG 502

Query: 61  AVIKNIETQLGQLVSVVSTMNKGKAPVEQEKTQMEYCKAITVHQEKVEEEPDSEEYDTPT 120
           A +KN+E Q+GQL +++ +  KGK P + E    E+C AIT+   K+ EE   ++   PT
Sbjct: 503 ATMKNLEVQIGQLATLMKSQQKGKFPSDTEVNPREHCNAITLRSGKMVEESKPKKIMVPT 562

BLAST of Lag0001173 vs. NCBI nr
Match: XP_022157708.1 (uncharacterized protein LOC111024361 [Momordica charantia])

HSP 1 Score: 68.9 bits (167), Expect = 4.0e-08
Identity = 35/98 (35.71%), Postives = 60/98 (61.22%), Query Frame = 0

Query: 21  QENKKLEDLVGAFIAESSNSTTKLEEAVIAINSTVNGHSAVIKNIETQLGQLVSVVSTMN 80
           ++   LEDL+GAFI E  +  +++E  V  +   + G++  IKN+E Q+GQ+   ++TM 
Sbjct: 286 EKKSSLEDLLGAFINECRSRASRIENQVEGMEVKLEGNTTSIKNMEVQIGQIAPTLNTMQ 345

Query: 81  KGKAPVEQEKTQMEYCKAITVHQEKVEEEPDSEEYDTP 119
           KGK P + E    E+CKA+T+   K  +EP+ ++ + P
Sbjct: 346 KGKFPSDIEVKPREHCKAVTLRSGKELQEPEKKKMEEP 383

BLAST of Lag0001173 vs. NCBI nr
Match: XP_022883717.1 (uncharacterized protein LOC111400543 [Olea europaea var. sylvestris])

HSP 1 Score: 68.6 bits (166), Expect = 5.2e-08
Identity = 43/140 (30.71%), Postives = 71/140 (50.71%), Query Frame = 0

Query: 1   MCYMNTFKNVLNPPGFALQTQENK-KLEDLVGAFIAESSNSTTKLEEAVIAINSTVNGHS 60
           + Y N    +  PPGF  Q  + K  LED++G FI+E+ +   K E  +  I + V+   
Sbjct: 231 LSYGNNRNTLQPPPGFNTQNSDGKPPLEDILGTFISETRSRFNKDESRLGKIETHVSNMG 290

Query: 61  AVIKNIETQLGQLVSVVSTMNKGKAPVEQEKTQMEYCKAITVHQEKV--EEEPDSEEYDT 120
           A +KN+E Q+GQL + + +  KGK P + E    E+CKA+ +   K   E EP  +   T
Sbjct: 291 ATMKNLEVQIGQLATSMKSQQKGKFPSDTEVNPKEHCKAVVLRSGKQVGESEPTEDSNPT 350

Query: 121 PTGKLRRTYHQMKLKSLNLN 138
           P  +  +   + + ++   N
Sbjct: 351 PDKEKEQVVEEQEKQAKGTN 370

BLAST of Lag0001173 vs. NCBI nr
Match: XP_022855495.1 (uncharacterized protein LOC111376753 [Olea europaea var. sylvestris])

HSP 1 Score: 67.8 bits (164), Expect = 8.8e-08
Identity = 41/120 (34.17%), Postives = 65/120 (54.17%), Query Frame = 0

Query: 1   MCYMNTFKNVLNPPGFALQTQENK-KLEDLVGAFIAESSNSTTKLEEAVIAINSTVNGHS 60
           + Y N    +  PPGF  Q  + K  LED++G FI+E+ +   K E  +  I + V+   
Sbjct: 46  LSYGNNRNTLQPPPGFNTQNSDGKPPLEDILGTFISETRSRFNKNELRLDNIETHVSNMG 105

Query: 61  AVIKNIETQLGQLVSVVSTMNKGKAPVEQEKTQMEYCKAITVHQEKVEEEPDSEEYDTPT 120
           A +KN+E Q+GQL + + +  KGK P + E    E+C AIT+   ++ EE   ++   PT
Sbjct: 106 ATMKNLEVQIGQLATSMKSQQKGKFPSDTEVNPREHCNAITLRSGQMVEESKPKKIMVPT 165

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022868848.11.0e-0833.59uncharacterized protein LOC111388394 [Olea europaea var. sylvestris][more]
XP_022843226.13.0e-0835.00uncharacterized protein LOC111366761 [Olea europaea var. sylvestris][more]
XP_022157708.14.0e-0835.71uncharacterized protein LOC111024361 [Momordica charantia][more]
XP_022883717.15.2e-0830.71uncharacterized protein LOC111400543 [Olea europaea var. sylvestris][more]
XP_022855495.18.8e-0834.17uncharacterized protein LOC111376753 [Olea europaea var. sylvestris][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0001173.1Lag0001173.1mRNA