Lag0001167 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001167
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr4: 25880931 .. 25881712 (-)
RNA-Seq Expression	Lag0001167
Synteny	Lag0001167

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGAACCGCCAAAGAGGTGTCGCATTAAGCGGAAGGCAGGCCGCATCAGGGTGATTCGGAATACCCCATCGTCTCCATCCTCGGACTCTGAGGAAGAAAGAAGGGAAAGAGAGAAAAAAGAAGCTGAGGACAAAGTGAGAGAAGAAACAGAAAAGAGAGCTGAGGAAGAACAGTTGCTCAAGCGTAGGGCGGAAAAGGGCAAAAACATTGCTGAAGCATCGGAGGAACACGATGAAATAGAAGAACAACAGTTACCATTTGATCGCTTCGCCAATAATTTTGCCAGAGCAAAATACGCTGAGCTTCTGAAAAGAGATTTCTTGTTTGAGCGCGGTTTCAGCGGTGATCTTCCACAGTTTCTGAGGACCGGTATTGCAGACCACGGCTGGGAGCTGTTTTGTGCGAAGCCTAAGTCTGTAAACGCACAGGTGGTGTGTGAATTTTATGCTAACATTGACAAGGAGGATGGTTTCCAGGTAATTGTCCGAGGAGTCGAGGTAGATTGGAGTCCAAGTGCTATCAACGCACTGTATAATCTTCAGAACTCCCCCATGCGGCATATAATGAGATGGTTGTGGAGCCATCTGATGAGCAACTAAGTGATGCTGTGCGGGAGGTAAGAATTGAAGGGGCACAGTGGCAGTTATCCAAAACTCAGAAGAGGACATTCCAGTCGGCTTATTTGAAAAGGGAAGCGAACACGTGGATGGAATTTATTAGACAGGGATGCTTCCAACAACACATGACTCGACAATCTCCAGGGAACGGGTTCTCCTAG

mRNA sequence

ATGCCTGAACCGCCAAAGAGGTGTCGCATTAAGCGGAAGGCAGGCCGCATCAGGGTGATTCGGAATACCCCATCGTCTCCATCCTCGGACTCTGAGGAAGAAAGAAGGGAAAGAGAGAAAAAAGAAGCTGAGGACAAAGTGAGAGAAGAAACAGAAAAGAGAGCTGAGGAAGAACAGTTGCTCAAGCGTAGGGCGGAAAAGGGCAAAAACATTGCTGAAGCATCGGAGGAACACGATGAAATAGAAGAACAACAGTTACCATTTGATCGCTTCGCCAATAATTTTGCCAGAGCAAAATACGCTGAGCTTCTGAAAAGAGATTTCTTGTTTGAGCGCGGTTTCAGCGGTGATCTTCCACAGTTTCTGAGGACCGGTATTGCAGACCACGGCTGGGAGCTGTTTTGTGCGAAGCCTAAGTCTGTAAACGCACAGGTGGTGTGTGAATTTTATGCTAACATTGACAAGGAGGATGGTTTCCAGATGGTTGTGGAGCCATCTGATGAGCAACTAAGTGATGCTGTGCGGGAGGTAAGAATTGAAGGGGCACAGTGGCAGTTATCCAAAACTCAGAAGAGGACATTCCAGTCGGCTTATTTGAAAAGGGAAGCGAACACGTGGATGGAATTTATTAGACAGGGATGCTTCCAACAACACATGACTCGACAATCTCCAGGGAACGGGTTCTCCTAG

Coding sequence (CDS)

ATGCCTGAACCGCCAAAGAGGTGTCGCATTAAGCGGAAGGCAGGCCGCATCAGGGTGATTCGGAATACCCCATCGTCTCCATCCTCGGACTCTGAGGAAGAAAGAAGGGAAAGAGAGAAAAAAGAAGCTGAGGACAAAGTGAGAGAAGAAACAGAAAAGAGAGCTGAGGAAGAACAGTTGCTCAAGCGTAGGGCGGAAAAGGGCAAAAACATTGCTGAAGCATCGGAGGAACACGATGAAATAGAAGAACAACAGTTACCATTTGATCGCTTCGCCAATAATTTTGCCAGAGCAAAATACGCTGAGCTTCTGAAAAGAGATTTCTTGTTTGAGCGCGGTTTCAGCGGTGATCTTCCACAGTTTCTGAGGACCGGTATTGCAGACCACGGCTGGGAGCTGTTTTGTGCGAAGCCTAAGTCTGTAAACGCACAGGTGGTGTGTGAATTTTATGCTAACATTGACAAGGAGGATGGTTTCCAGATGGTTGTGGAGCCATCTGATGAGCAACTAAGTGATGCTGTGCGGGAGGTAAGAATTGAAGGGGCACAGTGGCAGTTATCCAAAACTCAGAAGAGGACATTCCAGTCGGCTTATTTGAAAAGGGAAGCGAACACGTGGATGGAATTTATTAGACAGGGATGCTTCCAACAACACATGACTCGACAATCTCCAGGGAACGGGTTCTCCTAG

Protein sequence

MPEPPKRCRIKRKAGRIRVIRNTPSSPSSDSEEERREREKKEAEDKVREETEKRAEEEQLLKRRAEKGKNIAEASEEHDEIEEQQLPFDRFANNFARAKYAELLKRDFLFERGFSGDLPQFLRTGIADHGWELFCAKPKSVNAQVVCEFYANIDKEDGFQMVVEPSDEQLSDAVREVRIEGAQWQLSKTQKRTFQSAYLKREANTWMEFIRQGCFQQHMTRQSPGNGFS

Homology

[Close]

BLAST of Lag0001167 vs. NCBI nr
Match: EXB53755.1 (hypothetical protein L484_022412 [Morus notabilis])

HSP 1 Score: 55.8 bits (133), Expect = 5.5e-04
Identity = 40/122 (32.79%), Postives = 49/122 (40.16%), Query Frame = 0


Query: 119 PQFLRTGIADHGWELFCAKPKSVNAQVVCEFYAN----------------------IDKE 178
           P F+   I  HGW  FC  P +    +V EFYAN                      I+  
Sbjct: 4   PAFITRVIHQHGWRQFCQHPSNPIVPLVREFYANLLDFNQETVFVQNVKVPFTARAINSI 63

Query: 179 DGFQMVV--------EPSDEQLSDAVREVRIEGAQWQLSKTQKRTFQSAYLKREANTWME 211
            G + VV        E +DEQL   + EV IEGA WQ+S     T     LKR A  W  
Sbjct: 64  FGLEEVVDEYVDFASEVTDEQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYH 123

[Close]

BLAST of Lag0001167 vs. NCBI nr
Match: EXB49850.1 (hypothetical protein L484_000844 [Morus notabilis])

HSP 1 Score: 55.1 bits (131), Expect = 9.4e-04
Identity = 40/158 (25.32%), Postives = 67/158 (42.41%), Query Frame = 0


Query: 90  RFANNFARAKYAE-LLKRDFLFERGF------SGDLPQFLRTGIADHGWELFCAKPKSVN 149
           +F +N A  +Y E +  R+ + E+GF      +   P F+   I   GW++FC  P    
Sbjct: 40  KFVDNAAEKRYEENIWARNLVKEKGFLLHDSPTLGQPGFISDVIISRGWQIFCRHPIDPI 99

Query: 150 AQVVCEFYANI-----------------------------DKEDGF-QMVVEPSDEQLSD 209
             +V EFYAN+                             +++D F +++ +  +EQL +
Sbjct: 100 VPLVKEFYANLQNQGQNTVFVWEIDITFTSNYINGVLGIPNQDDEFVELITDAIEEQLKE 159

Query: 210 AVREVRIEGAQWQLSKTQKRTFQSAYLKREANTWMEFI 211
            ++ + I GAQW LS     T     L+  A  W  F+
Sbjct: 160 VLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFL 197

[Close]

BLAST of Lag0001167 vs. ExPASy TrEMBL
Match: W9QTD9 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022412 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.7e-04
Identity = 40/122 (32.79%), Postives = 49/122 (40.16%), Query Frame = 0


Query: 119 PQFLRTGIADHGWELFCAKPKSVNAQVVCEFYAN----------------------IDKE 178
           P F+   I  HGW  FC  P +    +V EFYAN                      I+  
Sbjct: 4   PAFITRVIHQHGWRQFCQHPSNPIVPLVREFYANLLDFNQETVFVQNVKVPFTARAINSI 63

Query: 179 DGFQMVV--------EPSDEQLSDAVREVRIEGAQWQLSKTQKRTFQSAYLKREANTWME 211
            G + VV        E +DEQL   + EV IEGA WQ+S     T     LKR A  W  
Sbjct: 64  FGLEEVVDEYVDFASEVTDEQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWYH 123

[Close]

BLAST of Lag0001167 vs. ExPASy TrEMBL
Match: W9RBS1 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000844 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.6e-04
Identity = 40/158 (25.32%), Postives = 67/158 (42.41%), Query Frame = 0


Query: 90  RFANNFARAKYAE-LLKRDFLFERGF------SGDLPQFLRTGIADHGWELFCAKPKSVN 149
           +F +N A  +Y E +  R+ + E+GF      +   P F+   I   GW++FC  P    
Sbjct: 40  KFVDNAAEKRYEENIWARNLVKEKGFLLHDSPTLGQPGFISDVIISRGWQIFCRHPIDPI 99

Query: 150 AQVVCEFYANI-----------------------------DKEDGF-QMVVEPSDEQLSD 209
             +V EFYAN+                             +++D F +++ +  +EQL +
Sbjct: 100 VPLVKEFYANLQNQGQNTVFVWEIDITFTSNYINGVLGIPNQDDEFVELITDAIEEQLKE 159

Query: 210 AVREVRIEGAQWQLSKTQKRTFQSAYLKREANTWMEFI 211
            ++ + I GAQW LS     T     L+  A  W  F+
Sbjct: 160 VLKTIAILGAQWLLSAKGSYTCNRHELQPAAKVWYHFL 197

The following BLAST results are available for this feature:

BLAST of Lag0001167 vs. NCBI nr


Match Name	E-value	Identity	Description
EXB53755.1	5.5e-04	32.79	hypothetical protein L484_022412 [Morus notabilis]	[more]
EXB49850.1	9.4e-04	25.32	hypothetical protein L484_000844 [Morus notabilis]	[more]

BLAST of Lag0001167 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0001167 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
W9QTD9	2.7e-04	32.79	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_022412 PE=4 SV=1	[more]
W9RBS1	4.6e-04	25.32	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000844 PE=4 SV=1	[more]

BLAST of Lag0001167 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 29..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001167.1	Lag0001167.1	mRNA