Lag0001111 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001111
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	GRF-type domain-containing protein
Location	chr4: 24599899 .. 24600375 (-)
RNA-Seq Expression	Lag0001111
Synteny	Lag0001111

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACGAGAAATGCCACATAAACTTTCGAAAATTGCAATGGATAACTTTGAAGAGTCCATAAGAGGCGATAATAGTGAAACTAAGAACCTTAGCTACTGTCACTGTGGGTTACGAGCTCGATTAATAACTTCATGGACAAAGAGGAACCCTGGAAGAAGATTCTATGGATGTCCTGGTTACAAGGTATGTATTCTTTTGTTTATGACTAGTTTATTCATTTTTCGGAAGGTTGCAATTTGTTTAGATACTCGGTTGCTCGTCTTCTCTGTTGTGTAGGGGAATGGTTCGGGATGTGAGTTTTTTTATTGGTGTGATCCAGAAGTATCAGAACACAACAAAGAAGTGATTAACAAACTAAGAGACGAAGTTGGTCGGTTGAAGAAGATTGCACAAAACTTGCGCCGTTTGGAGTGGTTGTATTGTGTAATAATTGTAGTATTGGTGGACATTTTAGTGATTGTATTTGGGTTTTGA

mRNA sequence

ATGTCACGAGAAATGCCACATAAACTTTCGAAAATTGCAATGGATAACTTTGAAGAGTCCATAAGAGGCGATAATAGTGAAACTAAGAACCTTAGCTACTGTCACTGTGGGTTACGAGCTCGATTAATAACTTCATGGACAAAGAGGAACCCTGGAAGAAGATTCTATGGATGTCCTGGTTACAAGGGGAATGGTTCGGGATGTGAGTTTTTTTATTGGTGTGATCCAGAAGTATCAGAACACAACAAAGAAGTGATTAACAAACTAAGAGACGAAGTTGGTCGGTTGAAGAAGATTGCACAAAACTTGCGCCGTTTGGAGTGGTTGTATTGTGTAATAATTGTAGTATTGGTGGACATTTTAGTGATTGTATTTGGGTTTTGA

Coding sequence (CDS)

ATGTCACGAGAAATGCCACATAAACTTTCGAAAATTGCAATGGATAACTTTGAAGAGTCCATAAGAGGCGATAATAGTGAAACTAAGAACCTTAGCTACTGTCACTGTGGGTTACGAGCTCGATTAATAACTTCATGGACAAAGAGGAACCCTGGAAGAAGATTCTATGGATGTCCTGGTTACAAGGGGAATGGTTCGGGATGTGAGTTTTTTTATTGGTGTGATCCAGAAGTATCAGAACACAACAAAGAAGTGATTAACAAACTAAGAGACGAAGTTGGTCGGTTGAAGAAGATTGCACAAAACTTGCGCCGTTTGGAGTGGTTGTATTGTGTAATAATTGTAGTATTGGTGGACATTTTAGTGATTGTATTTGGGTTTTGA

Protein sequence

MSREMPHKLSKIAMDNFEESIRGDNSETKNLSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCEFFYWCDPEVSEHNKEVINKLRDEVGRLKKIAQNLRRLEWLYCVIIVVLVDILVIVFGF

Homology

[Close]

BLAST of Lag0001111 vs. NCBI nr
Match: KAG6514840.1 (hypothetical protein ZIOFF_025214 [Zingiber officinale])

HSP 1 Score: 84.7 bits (208), Expect = 6.2e-13
Identity = 40/72 (55.56%), Postives = 48/72 (66.67%), Query Frame = 0


Query: 34 CHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCEFFYWCDPEVSEHNKEVIN------ 93
          CHCGLRA L TSWT+ NPGRRF+ CP Y+    GC FF W DPE+SE +K +IN      
Sbjct: 28 CHCGLRATLQTSWTESNPGRRFFSCPKYR--QKGCGFFLWHDPELSERSKTIINELKMIN 87

Query: 94 -KLRDEVGRLKK 99
           KL+ E+  LKK
Sbjct: 88 KKLKLEINELKK 97

[Close]

BLAST of Lag0001111 vs. NCBI nr
Match: XP_042395711.1 (uncharacterized protein LOC121986018 [Zingiber officinale])

HSP 1 Score: 82.4 bits (202), Expect = 3.1e-12
Identity = 41/82 (50.00%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 24  DNSETKNLSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCEFFYWCDPEVSEHNK 83
           +  ET N+S C+CGLRA L TSW + NPGRRF+ CP ++    GC FF W DPE+SE  K
Sbjct: 185 EQGETPNIS-CYCGLRATLWTSWKETNPGRRFFSCPRFRDR--GCGFFLWHDPELSERTK 244

Query: 84  EVIN-------KLRDEVGRLKK 99
            +IN       KL+ E+  LKK
Sbjct: 245 AIINHLKMDNKKLQMEISELKK 263

[Close]

BLAST of Lag0001111 vs. NCBI nr
Match: KAG6505340.1 (hypothetical protein ZIOFF_037695 [Zingiber officinale])

HSP 1 Score: 82.4 bits (202), Expect = 3.1e-12
Identity = 41/82 (50.00%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 24 DNSETKNLSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCEFFYWCDPEVSEHNK 83
          +  ET N+S C+CGLRA L TSW + NPGRRF+ CP ++    GC FF W DPE+SE  K
Sbjct: 19 EQGETPNIS-CYCGLRATLWTSWKETNPGRRFFSCPRFRDR--GCGFFLWHDPELSERTK 78

Query: 84 EVIN-------KLRDEVGRLKK 99
           +IN       KL+ E+  LKK
Sbjct: 79 AIINHLKMDNKKLQMEISELKK 97

[Close]

BLAST of Lag0001111 vs. NCBI nr
Match: KAG6471955.1 (hypothetical protein ZIOFF_069408 [Zingiber officinale])

HSP 1 Score: 82.0 bits (201), Expect = 4.0e-12
Identity = 41/82 (50.00%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 24 DNSETKNLSYCHCGLRARLITSWTKRNPGRRFYGCPGYKGNGSGCEFFYWCDPEVSEHNK 83
          +  ET N+S C+CGLRA L TSW + NPGRRF+ CP ++    GC FF W DPE+SE  K
Sbjct: 19 EQGETPNIS-CYCGLRATLWTSWKETNPGRRFFSCPRFRDR--GCGFFSWHDPELSERTK 78

Query: 84 EVIN-------KLRDEVGRLKK 99
           +IN       KL+ E+  LKK
Sbjct: 79 AIINHLKMDNKKLQMEISELKK 97

[Close]

BLAST of Lag0001111 vs. NCBI nr
Match: KAG6514370.1 (hypothetical protein ZIOFF_024723 [Zingiber officinale])

HSP 1 Score: 82.0 bits (201), Expect = 4.0e-12
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 34  CHCGLRARLITSWTKRNPGRRFYGCPGYKGN----GSGCEFFYWCDPEVSEHNKEVIN-- 93
           CHCGLRA L TSWT+ NPGR F+ CP Y+ +     +GC FF W DPE+SE +K +IN  
Sbjct: 28  CHCGLRATLQTSWTESNPGRHFFSCPKYRVSFCYINTGCGFFLWHDPELSERSKTIINEL 87

Query: 94  -----KLRDEVGRLKK 99
                KL+ E+  LKK
Sbjct: 88  KIINKKLKLEINELKK 103

The following BLAST results are available for this feature:

BLAST of Lag0001111 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6514840.1	6.2e-13	55.56	hypothetical protein ZIOFF_025214 [Zingiber officinale]	[more]
XP_042395711.1	3.1e-12	50.00	uncharacterized protein LOC121986018 [Zingiber officinale]	[more]
KAG6505340.1	3.1e-12	50.00	hypothetical protein ZIOFF_037695 [Zingiber officinale]	[more]
KAG6471955.1	4.0e-12	50.00	hypothetical protein ZIOFF_069408 [Zingiber officinale]	[more]
KAG6514370.1	4.0e-12	51.32	hypothetical protein ZIOFF_024723 [Zingiber officinale]	[more]

BLAST of Lag0001111 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 86..106
None	No IPR available	PANTHER	PTHR33248	ZINC ION-BINDING PROTEIN	coord: 14..102
None	No IPR available	PANTHER	PTHR33248:SF3	ZINC ION-BINDING PROTEIN	coord: 14..102
IPR010666	Zinc finger, GRF-type	PFAM	PF06839	zf-GRF	coord: 33..75 e-value: 2.4E-9 score: 37.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001111.1	Lag0001111.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding