Lag0001107 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001107
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr4: 24569236 .. 24570582 (+)
RNA-Seq Expression	Lag0001107
Synteny	Lag0001107

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGGAGCAAAATCGTCCGAAGTAAAAAGGATTTCGTTAGAAATTTATTATTTTTACCGTTGGGACTTGACTTTGAATTTTCGTAGGTAAATTTGAATGCATCATCTGATGAGGCCACGTGTCGCAGTGCAATTATCCGAAGGCTTCAATGATGACAGCACATCAATTTTTACCATGGGCGTTTGGAATCCACGATTTTATCGTTGCTTGTTTCAAATTTTTAGGTTCCATTCAATTCAAATTAAACGGTAATATTATTTAATGATAGCAAGATCTTTCGGTTAGGATTCGATTTGCTGGAGCCTTATTTATTAACCGCCTCTAGTAGGTAAATTTCACTTCATCTTCTTGTTTTGAATCTTTGTTGTGTGCATTCTTCTTTCTTTATTTCTCTGTCAATCCTTTGAACCTTCGATGGCTAAAACGAGAGCGTGAAAAGAGAGAGATATCGAGGAAGAGGAGGTACCCGTTACCCTCGAGGTTCAGAAAGCAAAAACGAAAAAGAAGAGGACACTGGAGGAGAAAGAAGCTAAAAGAAGAAGATGACAACAAAGGACTGAAGAGCAAGAAAAGGCAACAGAGGATGCGGCTGCTGCAGTGATTGAAGAAGGCCCGCAAGAACCGCAAGAACCGCGAGAACAGACCGCGGGAGAGGCTGATCGGAGAATTGCGGATACAGAACAACGTACAGAGGTTGTGCCTGAAGGAGATACGGAGTCAGTACAAGAGGCTCGAGTGGAGGTAGTCATGCCGGAGGTGCCCAGACGTCGTCGAATTAAGCGGAAAGCCGGCCGTATTCAGGTAGTACGAACTGATACCCCCTCGCCTCCGACTACTGACTCTGAAAAAGACAATACAGAGAGAGAGGAACAAGAGAAGAAGGAAGCTGAAGAGAAGACGAGAGAAGAAGAAGCAGAGAAGAAGATTGAGGAAGAGCAGTTGCTCAAGCGCAGGGCAGAGAAGGGCAAAAATGTTGCTGAAGCATCGGAGGAACACGATGAAATAGAAGAACAACAGTTACCATTTGATCGCTTCGTCAACAATTTTGCCAGAGCAAAATACTCTAAGCTTCTGAAAAGGAATTTCTTATTTGAGCGAGGATTCAGCGGTGATCTCCCACAATTTCTGAGGACATGTATTGTAGACCACGACTCGGAGCTATTTTGTGCGAAGCCTGAATCTGTAAACACACAGGTGGTGCGTGAATTTTATGCTAACATTGTCAAGGAGGATGGATTCCAGGTGATTGTTCGAGGAGTCGAGGTGGATTGGAGTCCTAGTGTTATCAATGCACTGTACAATCTTCAGAACTTCCCCATGCGGCATATAACGAGATGGCTGTAG

mRNA sequence

ATGGCTGGAGCAAAATCGTCCGAAGTAAAAAGGATTTCGTTAGAAATTTATTATTTTTACCGTTGGGACTTGACTTTGAATTTTCGTAGGACTGAAGAGCAAGAAAAGGCAACAGAGGATGCGGCTGCTGCAGTGATTGAAGAAGGCCCGCAAGAACCGCAAGAACCGCGAGAACAGACCGCGGGAGAGGCTGATCGGAGAATTGCGGATACAGAACAACGTACAGAGGTTGTGCCTGAAGGAGATACGGAGTCAGTACAAGAGGCTCGAGTGGAGGTAGTCATGCCGGAGGTGCCCAGACGTCGTCGAATTAAGCGGAAAGCCGGCCGTATTCAGGTAGTACGAACTGATACCCCCTCGCCTCCGACTACTGACTCTGAAAAAGACAATACAGAGAGAGAGGAACAAGAGAAGAAGGAAGCTGAAGAGAAGACGAGAGAAGAAGAAGCAGAGAAGAAGATTGAGGAAGAGCAGTTGCTCAAGCGCAGGGCAGAGAAGGGCAAAAATGTTGCTGAAGCATCGGAGGAACACGATGAAATAGAAGAACAACAGTTACCATTTGATCGCTTCGTCAACAATTTTGCCAGAGCAAAATACTCTAAGCTTCTGAAAAGGAATTTCTTATTTGAGCGAGGATTCAGCGGTGATCTCCCACAATTTCTGAGGACATGTATTGTAGACCACGACTCGGAGCTATTTTGTGCGAAGCCTGAATCTGTAAACACACAGGTGGTGCGTGAATTTTATGCTAACATTGTCAAGGAGGATGGATTCCAGGTGATTGTTCGAGGAGTCGAGGTGGATTGGAGTCCTAGTGTTATCAATGCACTGTACAATCTTCAGAACTTCCCCATGCGGCATATAACGAGATGGCTGTAG

Coding sequence (CDS)

ATGGCTGGAGCAAAATCGTCCGAAGTAAAAAGGATTTCGTTAGAAATTTATTATTTTTACCGTTGGGACTTGACTTTGAATTTTCGTAGGACTGAAGAGCAAGAAAAGGCAACAGAGGATGCGGCTGCTGCAGTGATTGAAGAAGGCCCGCAAGAACCGCAAGAACCGCGAGAACAGACCGCGGGAGAGGCTGATCGGAGAATTGCGGATACAGAACAACGTACAGAGGTTGTGCCTGAAGGAGATACGGAGTCAGTACAAGAGGCTCGAGTGGAGGTAGTCATGCCGGAGGTGCCCAGACGTCGTCGAATTAAGCGGAAAGCCGGCCGTATTCAGGTAGTACGAACTGATACCCCCTCGCCTCCGACTACTGACTCTGAAAAAGACAATACAGAGAGAGAGGAACAAGAGAAGAAGGAAGCTGAAGAGAAGACGAGAGAAGAAGAAGCAGAGAAGAAGATTGAGGAAGAGCAGTTGCTCAAGCGCAGGGCAGAGAAGGGCAAAAATGTTGCTGAAGCATCGGAGGAACACGATGAAATAGAAGAACAACAGTTACCATTTGATCGCTTCGTCAACAATTTTGCCAGAGCAAAATACTCTAAGCTTCTGAAAAGGAATTTCTTATTTGAGCGAGGATTCAGCGGTGATCTCCCACAATTTCTGAGGACATGTATTGTAGACCACGACTCGGAGCTATTTTGTGCGAAGCCTGAATCTGTAAACACACAGGTGGTGCGTGAATTTTATGCTAACATTGTCAAGGAGGATGGATTCCAGGTGATTGTTCGAGGAGTCGAGGTGGATTGGAGTCCTAGTGTTATCAATGCACTGTACAATCTTCAGAACTTCCCCATGCGGCATATAACGAGATGGCTGTAG

Protein sequence

MAGAKSSEVKRISLEIYYFYRWDLTLNFRRTEEQEKATEDAAAAVIEEGPQEPQEPREQTAGEADRRIADTEQRTEVVPEGDTESVQEARVEVVMPEVPRRRRIKRKAGRIQVVRTDTPSPPTTDSEKDNTEREEQEKKEAEEKTREEEAEKKIEEEQLLKRRAEKGKNVAEASEEHDEIEEQQLPFDRFVNNFARAKYSKLLKRNFLFERGFSGDLPQFLRTCIVDHDSELFCAKPESVNTQVVREFYANIVKEDGFQVIVRGVEVDWSPSVINALYNLQNFPMRHITRWL

Homology

[Close]

BLAST of Lag0001107 vs. NCBI nr
Match: PON42276.1 (hypothetical protein PanWU01x14_283280 [Parasponia andersonii])

HSP 1 Score: 67.0 bits (162), Expect = 3.1e-07
Identity = 37/93 (39.78%), Postives = 49/93 (52.69%), Query Frame = 0


Query: 195 ARAKYSK-LLKRNFLFERGFSGD------LPQFLRTCIVDHDSELFCAKPESVNTQVVRE 254
           A  +Y + +  R    E+GF GD       P F+   I  H+ +LFCA PE +   +VRE
Sbjct: 21  AETRYEENIQNRPLSAEKGFVGDNSKPLEKPPFIEDVITQHNWQLFCAHPEDLIAPLVRE 80

Query: 255 FYANIVKEDGFQVIVRGVEVDWSPSVINALYNL 281
           FYAN+   D   V VRGV+V  S   IN +Y L
Sbjct: 81  FYANMTNPDDDTVYVRGVQVPLSAEAINTIYGL 113

[Close]

BLAST of Lag0001107 vs. NCBI nr
Match: PON90635.1 (hypothetical protein TorRG33x02_134920 [Trema orientale])

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-06
Identity = 36/99 (36.36%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 189 RFVNNFARAKYSKLLKRNFL-FERGFSGD------LPQFLRTCIVDHDSELFCAKPESVN 248
           +F +  A A+Y + +K   L  E+GF+ +       P F+   I+ H+ +LFCA  E   
Sbjct: 15  KFDSEAAEARYEEHIKNQPLGAEKGFAWNNNEPLGQPPFIADVIIQHNWQLFCAHHEDPI 74

Query: 249 TQVVREFYANIVKEDGFQVIVRGVEVDWSPSVINALYNL 281
             +VREFYAN+   +   V V+GV+V WS   IN L+ L
Sbjct: 75  VPLVREFYANLTDPEEDTVYVKGVQVPWSEEAINTLFGL 113

[Close]

BLAST of Lag0001107 vs. ExPASy TrEMBL
Match: A0A2P5B0K0 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_283280 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-07
Identity = 37/93 (39.78%), Postives = 49/93 (52.69%), Query Frame = 0


Query: 195 ARAKYSK-LLKRNFLFERGFSGD------LPQFLRTCIVDHDSELFCAKPESVNTQVVRE 254
           A  +Y + +  R    E+GF GD       P F+   I  H+ +LFCA PE +   +VRE
Sbjct: 21  AETRYEENIQNRPLSAEKGFVGDNSKPLEKPPFIEDVITQHNWQLFCAHPEDLIAPLVRE 80

Query: 255 FYANIVKEDGFQVIVRGVEVDWSPSVINALYNL 281
           FYAN+   D   V VRGV+V  S   IN +Y L
Sbjct: 81  FYANMTNPDDDTVYVRGVQVPLSAEAINTIYGL 113

[Close]

BLAST of Lag0001107 vs. ExPASy TrEMBL
Match: A0A2P5CXV1 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113570 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.3e-07
Identity = 38/99 (38.38%), Postives = 51/99 (51.52%), Query Frame = 0


Query: 189 RFVNNFARAKYSK-LLKRNFLFERGFSGD------LPQFLRTCIVDHDSELFCAKPESVN 248
           +F +  A  +Y + +  R    E+GF GD       P F+   I  H+ +LFCA PE   
Sbjct: 15  KFKSEAAETRYEENIQNRPLSAEKGFVGDNSKPLEKPPFIADVITQHNWQLFCAHPEDPI 74

Query: 249 TQVVREFYANIVKEDGFQVIVRGVEVDWSPSVINALYNL 281
             +VREFYAN+   D   V VRGV+V  S   IN +Y L
Sbjct: 75  VPLVREFYANMTNPDDDTVYVRGVQVLLSSEAINTIYGL 113

The following BLAST results are available for this feature:

BLAST of Lag0001107 vs. NCBI nr


Match Name	E-value	Identity	Description
PON42276.1	3.1e-07	39.78	hypothetical protein PanWU01x14_283280 [Parasponia andersonii]	[more]
PON90635.1	2.0e-06	36.36	hypothetical protein TorRG33x02_134920 [Trema orientale]	[more]

BLAST of Lag0001107 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0001107 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5B0K0	1.5e-07	39.78	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_283280 PE...	[more]
A0A2P5CXV1	3.3e-07	38.38	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113570 PE...	[more]

BLAST of Lag0001107 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 124..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 126..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 105..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001107.1	Lag0001107.1	mRNA