Lag0001057 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0001057
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Gag/pol protein
Location	chr4: 23164379 .. 23166390 (+)
RNA-Seq Expression	Lag0001057
Synteny	Lag0001057

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAAAGCAGTGGGAGGGCATGAGTAATTCATTTCTTTTGGATGATTATTCAAAGGTATGAGTATCTTTACCTAATGCAACTTAAGTCTGAAGCTCTTGAGATATTCGAAGGGGCTTAGGACTGAAGTTGAAAACTTGTTAGGTGAGATGATAAAAACACTTCGATCTGATCAAAGTATTGAGAATAGGGATTTGAGATTCCAGGACTATTTGATAGTACATGGGATCACACCCTAAATCTCATTTAGGTGAAATAGAACCCTATTGGATATGGTTCATTCCATGTTGAGCTATGCTCAATTGTCTGGCTCGTTTTGGGGTCATGCAGTGTTGACTGCATTGCATACTGTAGTAGGCAACCCCAAAGGAAACGAGAAGTGGATACTTCTCCAATTCACAAGAGAATAAAGAATTTGTATCAACAAATGCTAAATTCTCAGAAGAAGTCCACATAAAAAATATAAACTACAAGAGTAAAGTCGATTTAAGTAAGTTAACTAATGAAGCTACAGTAACATCCACAAGAGTTGTTGATGAGGTTGACTGTTCAACAAGAGTTGTTGATGGATCAGTGCATCTAGTTAGTCACATCCATCTCAATAGTTGAGATTTCCTCAATGTAGTGGGAGGGTTGTTTGATAACCTGAACGTTACATGAGATTGTTTGAAGCCTAGGTCATCATACCTGATGATGGCATAGTGGGTTCATTATCTTTTAGAAAGAAAATGAATGATGTTGACAAGGACCAATGGATTAAAGTCATGGACCTGGAAATGAAGTCTTTTGTATTTCACTTCCATCTGGGATCTTGTAGATCTGCTTGATGGGTAACACCTATTAGTTACAAGTGGATTTACAAGAGAAAATGAGACATTAAAGGTCTTAACAAGAAGGGTTCATACAACAATATCGAAAGCAAAAGGGTTTGCAAGCTTAAGTGATCCATTCATGGATTGACATAAGCATTTCGATCTTGAAATATAAGATTTGATATAGTGACCAAATCTTTTGATTTTAATCAGAACATTAATGAGTCTTGTGTTTACAAGTAATCATCAATAGTTTAGTAGCTTACTTAGTGTTGTATATGATTGAAATCCTAATCATTGGAAATGATGTAGGTTATCTTACTGACATTAAAGGAGCTAGCAGCTCATTTCCAAATGGAAATTTGGGAGAAGCCGAGTTTGTTCTTGGGATCCAAATCGTTAGGAATCGTTAGAACAAAAGTTAGCCTTGTCTCAAGTGACTTATATCTACAAGATGTCAGTTAGATATAAGATTGATTGGTTGTGTCAGTGTAATTGGTAAAATAGTCGTAGATTTAAATCAATCCAAGTATAAACTTACAAATCAAGTAGTACCTGATGAGTTCAGGGTCGAATCCACAGGGAAATGAAACAAAATGATATATTCACTGATTTAATTTCTCAACGTGTGACTGATAACTGTCCGAAAGGTAGTTATTTAGGCCTTAATTCTATAGGGATTTGTGTGTCTTTTGTGCTTAATAGGGTTGCTTTAGATGAATATTATATGTTTTAATCCATTTGGAAGAATGGAGGCTTTGAAAGTGATTTTGTGCAGAAAATATTGCTGAGCGACTGGAGGGAGCAAATTCTGTGCTGCAGCAAAACTGGGAGCAAAACTGCCACGTCACAACTCGTTAGCCAAGTTGACAAACCGACTTATGTTGAGTTATTTTCGAGATAAAGGAGCAAGGAGATCCTTCCATGTGTCCAATTTAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGCCAGCTTCAATGCCATATATTGATGCAGCAGAGGAAGCTTTTGAGTCATCATTTCAAACATTCGAGGTGGCAAGTGCTACGACACTATATGGGAAGGCAAGAAATCTAAATCTCGATCTTCAGTCAAGACGTTCAAAGAAAGCAACAGTCGTTTAG

mRNA sequence

ATGTTAAAGCAGTGGGAGGGCATGAGTAATTCATTTCTTTTGGATGATTATTCAAAGGCAACCCCAAAGGAAACGAGAAGTGGATACTTCTCCAATTCACAAGAGAATAAAGAATTTGTATCAACAAATGCTAAATTCTCAGAAGAAGTCCACATAAAAAATATAAACTACAAGAGTAAAGTCGATTTAAGTAAGTTAACTAATGAAGCTACAGTAACATCCACAAGAGTTGTTGATGAGGTTGACTGTTCAACAAGAGTTGTTGATGGATCAGTGCATCTAGTCATCATACCTGATGATGGCATAGTGGGTTCATTATCTTTTAGAAAGAAAATGAATGATGTTGACAAGGACCAATGGATTAAAGTCATGGACCTGGAAATGAAGTCTTTTGTATTTCACTTCCATCTGGGATCTTGTTATCTTACTGACATTAAAGGAGCTAGCAGCTCATTTCCAAATGGAAATTTGGGAGAAGCCGAGTTTGTTCTTGGGATCCAAATCGTTAGGAATCAAAATATTGCTGAGCGACTGGAGGGAGCAAATTCTGTGCTGCAGCAAAACTGGGAGCAAAACTGCCACGTCACAACTCCTTCAATGCCATATATTGATGCAGCAGAGGAAGCTTTTGAGTCATCATTTCAAACATTCGAGGTGGCAAGTGCTACGACACTATATGGGAAGGCAAGAAATCTAAATCTCGATCTTCAGTCAAGACGTTCAAAGAAAGCAACAGTCGTTTAG

Coding sequence (CDS)

ATGTTAAAGCAGTGGGAGGGCATGAGTAATTCATTTCTTTTGGATGATTATTCAAAGGCAACCCCAAAGGAAACGAGAAGTGGATACTTCTCCAATTCACAAGAGAATAAAGAATTTGTATCAACAAATGCTAAATTCTCAGAAGAAGTCCACATAAAAAATATAAACTACAAGAGTAAAGTCGATTTAAGTAAGTTAACTAATGAAGCTACAGTAACATCCACAAGAGTTGTTGATGAGGTTGACTGTTCAACAAGAGTTGTTGATGGATCAGTGCATCTAGTCATCATACCTGATGATGGCATAGTGGGTTCATTATCTTTTAGAAAGAAAATGAATGATGTTGACAAGGACCAATGGATTAAAGTCATGGACCTGGAAATGAAGTCTTTTGTATTTCACTTCCATCTGGGATCTTGTTATCTTACTGACATTAAAGGAGCTAGCAGCTCATTTCCAAATGGAAATTTGGGAGAAGCCGAGTTTGTTCTTGGGATCCAAATCGTTAGGAATCAAAATATTGCTGAGCGACTGGAGGGAGCAAATTCTGTGCTGCAGCAAAACTGGGAGCAAAACTGCCACGTCACAACTCCTTCAATGCCATATATTGATGCAGCAGAGGAAGCTTTTGAGTCATCATTTCAAACATTCGAGGTGGCAAGTGCTACGACACTATATGGGAAGGCAAGAAATCTAAATCTCGATCTTCAGTCAAGACGTTCAAAGAAAGCAACAGTCGTTTAG

Protein sequence

MLKQWEGMSNSFLLDDYSKATPKETRSGYFSNSQENKEFVSTNAKFSEEVHIKNINYKSKVDLSKLTNEATVTSTRVVDEVDCSTRVVDGSVHLVIIPDDGIVGSLSFRKKMNDVDKDQWIKVMDLEMKSFVFHFHLGSCYLTDIKGASSSFPNGNLGEAEFVLGIQIVRNQNIAERLEGANSVLQQNWEQNCHVTTPSMPYIDAAEEAFESSFQTFEVASATTLYGKARNLNLDLQSRRSKKATVV

Homology

[Close]

BLAST of Lag0001057 vs. NCBI nr
Match: KAA0045186.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK27366.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 2.0e-20
Identity = 75/183 (40.98%), Postives = 102/183 (55.74%), Query Frame = 0


Query: 22  PKETRSGYFSNSQENKEFVSTNAKFSEEVHIKNINYKSKVDLSKLTNEATVTSTRVVDEV 81
           PKETR G F + QEN+ FVSTNA F EE H+++   +SK+ L    NEAT  STRV DEV
Sbjct: 224 PKETRGGLFFDLQENRVFVSTNAIFLEEDHMRDHKLRSKLVL----NEATHESTRVFDEV 283

Query: 82  DCSTRVVDGSVHLVIIPDDGIVGSLSFRKKMNDVDKDQWIKVMDLEMKSFVF-------- 141
             S+RV +      I  DD +   LS+++ MNDVDKDQW+K MDLEMKS  F        
Sbjct: 284 GLSSRVDE-----TITSDDSVEDPLSYKQTMNDVDKDQWVKAMDLEMKSMYFNSVWELVD 343

Query: 142 -----HFHL-----------------GSCYLTDIKG--ASSSFPNGNLGEAEFVLGIQIV 173
                HF +                  S +++ ++G      F   +LGEA+++LGIQI+
Sbjct: 344 LLEGPHFMIMTWKMDVKTAFLNDNLEESIFMSQLEGFITQGQFQMKDLGEAQYILGIQII 397

[Close]

BLAST of Lag0001057 vs. NCBI nr
Match: TYJ98650.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-18
Identity = 63/118 (53.39%), Postives = 80/118 (67.80%), Query Frame = 0


Query: 22  PKETRSGYFSNSQENKEFVSTNAKFSEEVHIKNINYKSKVDLSKLTNEATVTSTRVVDEV 81
           PKE R G F + QEN+ FVSTNA F EE H+++   +SK+ L    NEAT  STRVVDEV
Sbjct: 328 PKEMRGGLFFDPQENRVFVSTNATFLEEDHMRDHKPRSKLVL----NEATDKSTRVVDEV 387

Query: 82  DCSTRV----VDGSVHL-VIIPDDGIVGSLSFRKKMNDVDKDQWIKVMDLEMKSFVFH 135
             S+RV      G +   V+IPDDG+   LS+++ MNDVDKDQW+K MDLEM+S  F+
Sbjct: 388 GLSSRVDESITSGLIETQVVIPDDGVEHPLSYKQVMNDVDKDQWVKAMDLEMESMYFN 441

[Close]

BLAST of Lag0001057 vs. NCBI nr
Match: KAA0047456.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-18
Identity = 63/118 (53.39%), Postives = 80/118 (67.80%), Query Frame = 0


Query: 22  PKETRSGYFSNSQENKEFVSTNAKFSEEVHIKNINYKSKVDLSKLTNEATVTSTRVVDEV 81
           PKE R G F + QEN+ FVSTNA F EE H+++   +SK+ L    NEAT  STRVVDEV
Sbjct: 394 PKEMRGGLFFDPQENRVFVSTNATFLEEDHMRDHKPRSKLVL----NEATDKSTRVVDEV 453

Query: 82  DCSTRV----VDGSVHL-VIIPDDGIVGSLSFRKKMNDVDKDQWIKVMDLEMKSFVFH 135
             S+RV      G +   V+IPDDG+   LS+++ MNDVDKDQW+K MDLEM+S  F+
Sbjct: 454 GLSSRVDESITSGLIETQVVIPDDGVEHPLSYKQVMNDVDKDQWVKAMDLEMESMYFN 507

[Close]

BLAST of Lag0001057 vs. NCBI nr
Match: KAA0060473.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-18
Identity = 61/113 (53.98%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 22  PKETRSGYFSNSQENKEFVSTNAKFSEEVHIKNINYKSKVDLSKLTNEATVTSTRVVDEV 81
           PKETR   F + QENK FVSTNA F EE H+++   +SK+ L++ TNE    STRVVDEV
Sbjct: 99  PKETRGSLFFDPQENKVFVSTNATFLEEDHLRDHKPQSKLVLNEATNE----STRVVDEV 158

Query: 82  DCSTRVVDGSVHLVIIPDDGIVGSLSFRKKMNDVDKDQWIKVMDLEMKSFVFH 135
             S+RVV        IPDDG+  SLS+++ MNDVDKD+W+K MDLEM+   F+
Sbjct: 159 GRSSRVV--------IPDDGVEDSLSYKQAMNDVDKDEWVKAMDLEMEYMYFN 199

[Close]

BLAST of Lag0001057 vs. NCBI nr
Match: KAA0059678.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 3.3e-18
Identity = 58/113 (51.33%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 22  PKETRSGYFSNSQENKEFVSTNAKFSEEVHIKNINYKSKVDLSKLTNEATVTSTRVVDEV 81
           PKETR G F + QEN+ FVSTNA F EE H+++   +SK+ L    NEAT  STRV+DEV
Sbjct: 406 PKETRDGLFFDPQENRVFVSTNATFLEEDHMRDHKLRSKLVL----NEATDESTRVIDEV 465

Query: 82  DCSTRVVDGSVHLVIIPDDGIVGSLSFRKKMNDVDKDQWIKVMDLEMKSFVFH 135
                ++    H V+IPDDG+   LS+++ MNDVDK+QW+K MDLE++S  F+
Sbjct: 466 GSHQELMK-LPHQVVIPDDGVEDPLSYKQAMNDVDKNQWVKAMDLEIESMYFN 513

[Close]

BLAST of Lag0001057 vs. ExPASy TrEMBL
Match: A0A5D3DUH7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00420 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 9.9e-21
Identity = 75/183 (40.98%), Postives = 102/183 (55.74%), Query Frame = 0


Query: 22  PKETRSGYFSNSQENKEFVSTNAKFSEEVHIKNINYKSKVDLSKLTNEATVTSTRVVDEV 81
           PKETR G F + QEN+ FVSTNA F EE H+++   +SK+ L    NEAT  STRV DEV
Sbjct: 224 PKETRGGLFFDLQENRVFVSTNAIFLEEDHMRDHKLRSKLVL----NEATHESTRVFDEV 283

Query: 82  DCSTRVVDGSVHLVIIPDDGIVGSLSFRKKMNDVDKDQWIKVMDLEMKSFVF-------- 141
             S+RV +      I  DD +   LS+++ MNDVDKDQW+K MDLEMKS  F        
Sbjct: 284 GLSSRVDE-----TITSDDSVEDPLSYKQTMNDVDKDQWVKAMDLEMKSMYFNSVWELVD 343

Query: 142 -----HFHL-----------------GSCYLTDIKG--ASSSFPNGNLGEAEFVLGIQIV 173
                HF +                  S +++ ++G      F   +LGEA+++LGIQI+
Sbjct: 344 LLEGPHFMIMTWKMDVKTAFLNDNLEESIFMSQLEGFITQGQFQMKDLGEAQYILGIQII 397

[Close]

BLAST of Lag0001057 vs. ExPASy TrEMBL
Match: A0A5D3BFS9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold507G00360 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.4e-19
Identity = 63/118 (53.39%), Postives = 80/118 (67.80%), Query Frame = 0


Query: 22  PKETRSGYFSNSQENKEFVSTNAKFSEEVHIKNINYKSKVDLSKLTNEATVTSTRVVDEV 81
           PKE R G F + QEN+ FVSTNA F EE H+++   +SK+ L    NEAT  STRVVDEV
Sbjct: 328 PKEMRGGLFFDPQENRVFVSTNATFLEEDHMRDHKPRSKLVL----NEATDKSTRVVDEV 387

Query: 82  DCSTRV----VDGSVHL-VIIPDDGIVGSLSFRKKMNDVDKDQWIKVMDLEMKSFVFH 135
             S+RV      G +   V+IPDDG+   LS+++ MNDVDKDQW+K MDLEM+S  F+
Sbjct: 388 GLSSRVDESITSGLIETQVVIPDDGVEHPLSYKQVMNDVDKDQWVKAMDLEMESMYFN 441

[Close]

BLAST of Lag0001057 vs. ExPASy TrEMBL
Match: A0A5A7UWW0 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G003030 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.4e-19
Identity = 61/113 (53.98%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 22  PKETRSGYFSNSQENKEFVSTNAKFSEEVHIKNINYKSKVDLSKLTNEATVTSTRVVDEV 81
           PKETR   F + QENK FVSTNA F EE H+++   +SK+ L++ TNE    STRVVDEV
Sbjct: 99  PKETRGSLFFDPQENKVFVSTNATFLEEDHLRDHKPQSKLVLNEATNE----STRVVDEV 158

Query: 82  DCSTRVVDGSVHLVIIPDDGIVGSLSFRKKMNDVDKDQWIKVMDLEMKSFVFH 135
             S+RVV        IPDDG+  SLS+++ MNDVDKD+W+K MDLEM+   F+
Sbjct: 159 GRSSRVV--------IPDDGVEDSLSYKQAMNDVDKDEWVKAMDLEMEYMYFN 199

[Close]

BLAST of Lag0001057 vs. ExPASy TrEMBL
Match: A0A5A7TZQ3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00600 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 5.4e-19
Identity = 63/118 (53.39%), Postives = 80/118 (67.80%), Query Frame = 0


Query: 22  PKETRSGYFSNSQENKEFVSTNAKFSEEVHIKNINYKSKVDLSKLTNEATVTSTRVVDEV 81
           PKE R G F + QEN+ FVSTNA F EE H+++   +SK+ L    NEAT  STRVVDEV
Sbjct: 394 PKEMRGGLFFDPQENRVFVSTNATFLEEDHMRDHKPRSKLVL----NEATDKSTRVVDEV 453

Query: 82  DCSTRV----VDGSVHL-VIIPDDGIVGSLSFRKKMNDVDKDQWIKVMDLEMKSFVFH 135
             S+RV      G +   V+IPDDG+   LS+++ MNDVDKDQW+K MDLEM+S  F+
Sbjct: 454 GLSSRVDESITSGLIETQVVIPDDGVEHPLSYKQVMNDVDKDQWVKAMDLEMESMYFN 507

[Close]

BLAST of Lag0001057 vs. ExPASy TrEMBL
Match: A0A5A7UWW4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G001280 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-18
Identity = 58/113 (51.33%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 22  PKETRSGYFSNSQENKEFVSTNAKFSEEVHIKNINYKSKVDLSKLTNEATVTSTRVVDEV 81
           PKETR G F + QEN+ FVSTNA F EE H+++   +SK+ L    NEAT  STRV+DEV
Sbjct: 406 PKETRDGLFFDPQENRVFVSTNATFLEEDHMRDHKLRSKLVL----NEATDESTRVIDEV 465

Query: 82  DCSTRVVDGSVHLVIIPDDGIVGSLSFRKKMNDVDKDQWIKVMDLEMKSFVFH 135
                ++    H V+IPDDG+   LS+++ MNDVDK+QW+K MDLE++S  F+
Sbjct: 466 GSHQELMK-LPHQVVIPDDGVEDPLSYKQAMNDVDKNQWVKAMDLEIESMYFN 513

The following BLAST results are available for this feature:

BLAST of Lag0001057 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045186.1	2.0e-20	40.98	gag/pol protein [Cucumis melo var. makuwa] >TYK27366.1 gag/pol protein [Cucumis ...	[more]
TYJ98650.1	1.1e-18	53.39	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0047456.1	1.1e-18	53.39	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0060473.1	1.1e-18	53.98	retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]	[more]
KAA0059678.1	3.3e-18	51.33	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0001057 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0001057 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DUH7	9.9e-21	40.98	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G0042...	[more]
A0A5D3BFS9	5.4e-19	53.39	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold507G0036...	[more]
A0A5A7UWW0	5.4e-19	53.98	Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw...	[more]
A0A5A7TZQ3	5.4e-19	53.39	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G0060...	[more]
A0A5A7UWW4	1.6e-18	51.33	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G00128...	[more]

BLAST of Lag0001057 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0001057.1	Lag0001057.1	mRNA