Lag0000988 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0000988
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Photosystem II CP43 reaction center protein
Location	chr4: 21660935 .. 21661665 (-)
RNA-Seq Expression	Lag0000988
Synteny	Lag0000988

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTCTTTCTGTGAGAATGCCGTAGGACTCCAGGAATTTTGGAAGCTGAACATGCTCAAAAGATGCCTGCCTAAAGCATTTCGCTTTGATCATTCGACTGTCCACCGAGTGAAACGGTATCCTCGTATGGACTTGACAGCTTCAGCGTACAAGGACCCGGGCTGAGACCAGAACATAGAAGACATCACCATAAGTCTCAGGAGGTTCTACCCCGTGGAAACGCTCTTTAATGGAACTTTAGCTTTAGCTGGTCGTGACCAAGAAACCACCGGTTTCGCTTGGTGGGCCGGGAATGCCCGACAACTCAATTTATCCGGTAAACTACTAGGGGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGGCCGGAGCAATGAACCTATTCGAAGTGGCTCATTTCGTACCGGAGAAGCCCATGTATGAACAAGGATGAATTTGACTTCCCCACCTAGCTACTCTAGGTTGGGGGGTAGGTCCTGGTGGGGAAGTTATAGACACCTTTCCGTACTTTGTGTCTGGAGTACTTCACTGAATTTCCTCCGCAGTATTGGGTTTTGGCGGTATTTATCATGCACTTCTGGGACCCGGACGATTCCACAGCGTAGAGCTTCAATCAATAGGCCATTTCAGTCTTCTTTTATCCTCAGACCCGCTCCCCTTTCTTTTCCAATTGGGCTTTGTGCCACGCCACTTCGGAGAGTGAAACGAAGGAAAAGCCTGACCTGA

mRNA sequence

ATGTTTTCTTTCTGTGAGAATGCCGTAGGACTCCAGGAATTTTGGAAGCTGAACATGCTCAAAAGATGCCTGCCTAAAGCATTTCGCTTTGATCATTCGACTGTCCACCGAGTGAAACGGAGGTTCTACCCCGTGGAAACGCTCTTTAATGGAACTTTAGCTTTAGCTGGTCGTGACCAAGAAACCACCGGTTTCGCTTGGTGGGCCGGGAATGCCCGACAACTCAATTTATCCGGTAAACTACTAGGGGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGGCCGGAGCAATGAACCTATTCGAAGTGGCTCATTTCGTACCGGAGAAGCCCATTATTGGGTTTTGGCGGTATTTATCATGCACTTCTGGGACCCGGACGATTCCACAGCGTAGAGCTTCAATCAATAGGCCATTTCAGTCTTCTTTTATCCTCAGACCCGCTCCCCTTTCTTTTCCAATTGGGCTTTGTGCCACGCCACTTCGGAGAGTGAAACGAAGGAAAAGCCTGACCTGA

Coding sequence (CDS)

ATGTTTTCTTTCTGTGAGAATGCCGTAGGACTCCAGGAATTTTGGAAGCTGAACATGCTCAAAAGATGCCTGCCTAAAGCATTTCGCTTTGATCATTCGACTGTCCACCGAGTGAAACGGAGGTTCTACCCCGTGGAAACGCTCTTTAATGGAACTTTAGCTTTAGCTGGTCGTGACCAAGAAACCACCGGTTTCGCTTGGTGGGCCGGGAATGCCCGACAACTCAATTTATCCGGTAAACTACTAGGGGCTCATGTAGCCCATGCCGGATTAATCGTATTCTGGGCCGGAGCAATGAACCTATTCGAAGTGGCTCATTTCGTACCGGAGAAGCCCATTATTGGGTTTTGGCGGTATTTATCATGCACTTCTGGGACCCGGACGATTCCACAGCGTAGAGCTTCAATCAATAGGCCATTTCAGTCTTCTTTTATCCTCAGACCCGCTCCCCTTTCTTTTCCAATTGGGCTTTGTGCCACGCCACTTCGGAGAGTGAAACGAAGGAAAAGCCTGACCTGA

Protein sequence

MFSFCENAVGLQEFWKLNMLKRCLPKAFRFDHSTVHRVKRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPIIGFWRYLSCTSGTRTIPQRRASINRPFQSSFILRPAPLSFPIGLCATPLRRVKRRKSLT

Homology

[Close]

BLAST of Lag0000988 vs. NCBI nr
Match: YP_010048629.1 (photosystem II CP43 chlorophyll apoprotein [Quercus acuta] >QPK76998.1 photosystem II CP43 chlorophyll apoprotein [Quercus acuta])

HSP 1 Score: 157.1 bits (396), Expect = 1.3e-34
Identity = 72/80 (90.00%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 34  TVHRVKRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIV 93
           T++ ++RRFYPVETLFNGTLALAGRDQETTGFAWWAGNAR +NLSGKLLGAHVAHAGLIV
Sbjct: 17  TLYSLRRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIV 76

Query: 94  FWAGAMNLFEVAHFVPEKPI 114
           FWAGAMNLFEVAHFVPEKP+
Sbjct: 77  FWAGAMNLFEVAHFVPEKPM 96

[Close]

BLAST of Lag0000988 vs. NCBI nr
Match: KAG9438608.1 (hypothetical protein H6P81_021450 [Aristolochia fimbriata])

HSP 1 Score: 155.6 bits (392), Expect = 3.8e-34
Identity = 72/78 (92.31%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 36  HRVKRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFW 95
           + +KRRFYPVETLFNGTLALAGRDQETTGFAWWAGNAR +NLSGKLLGAHVAHAGLIVFW
Sbjct: 300 YSLKRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFW 359

Query: 96  AGAMNLFEVAHFVPEKPI 114
           AGAMNLFEVAHFVPEKP+
Sbjct: 360 AGAMNLFEVAHFVPEKPM 377

[Close]

BLAST of Lag0000988 vs. NCBI nr
Match: KAG9438488.1 (hypothetical protein H6P81_021569 [Aristolochia fimbriata])

HSP 1 Score: 155.6 bits (392), Expect = 3.8e-34
Identity = 72/78 (92.31%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 36  HRVKRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFW 95
           + +KRRFYPVETLFNGTLALAGRDQETTGFAWWAGNAR +NLSGKLLGAHVAHAGLIVFW
Sbjct: 122 YSLKRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFW 181

Query: 96  AGAMNLFEVAHFVPEKPI 114
           AGAMNLFEVAHFVPEKP+
Sbjct: 182 AGAMNLFEVAHFVPEKPM 199

[Close]

BLAST of Lag0000988 vs. NCBI nr
Match: YP_009390805.1 (photosystem II CP43 chlorophyll apoprotein [Punica granatum] >ARV87268.1 photosystem II CP43 chlorophyll apoprotein [Punica granatum] >QDD68466.1 photosystem II CP43 chlorophyll apoprotein [Punica granatum] >QDD68550.1 photosystem II CP43 chlorophyll apoprotein [Punica granatum] >QDD68634.1 photosystem II CP43 chlorophyll apoprotein [Punica granatum] >QID57807.1 photosystem II 44 kDa protein [Punica granatum])

HSP 1 Score: 153.3 bits (386), Expect = 1.9e-33
Identity = 71/75 (94.67%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 39  KRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGA 98
           +RRFYPVETLFNGTLALAGRDQETTGFAWWAGNAR +NLSGKLLGAHVAHAGLIVFWAGA
Sbjct: 7   QRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGA 66

Query: 99  MNLFEVAHFVPEKPI 114
           MNLFEVAHFVPEKP+
Sbjct: 67  MNLFEVAHFVPEKPM 81

[Close]

BLAST of Lag0000988 vs. NCBI nr
Match: YP_009092299.1 (photosystem II CP43 chlorophyll apoprotein [Macadamia integrifolia] >YP_009445427.1 photosystem II CP43 chlorophyll apoprotein [Macadamia ternifolia] >AHB38155.1 photosystem II CP43 chlorophyll apoprotein [Macadamia integrifolia] >ATV96162.1 photosystem II CP43 chlorophyll apoprotein [Macadamia ternifolia])

HSP 1 Score: 153.3 bits (386), Expect = 1.9e-33
Identity = 71/75 (94.67%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 39  KRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGA 98
           +RRFYPVETLFNGTLALAGRDQETTGFAWWAGNAR +NLSGKLLGAHVAHAGLIVFWAGA
Sbjct: 7   QRRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGA 66

Query: 99  MNLFEVAHFVPEKPI 114
           MNLFEVAHFVPEKP+
Sbjct: 67  MNLFEVAHFVPEKPM 81

[Close]

BLAST of Lag0000988 vs. ExPASy Swiss-Prot
Match: A9LYI1 (Photosystem II CP43 reaction center protein OS=Acorus americanus OX=263995 GN=psbC PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.3e-36
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 40  RRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAM 99
           RRFYPVETLFNGTLALAGRDQETTGFAWWAGNAR +NLSGKLLGAHVAHAGLIVFWAGAM
Sbjct: 8   RRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAM 67

Query: 100 NLFEVAHFVPEKPI 114
           NLFEVAHFVPEKP+
Sbjct: 68  NLFEVAHFVPEKPM 81

[Close]

BLAST of Lag0000988 vs. ExPASy Swiss-Prot
Match: Q3V538 (Photosystem II CP43 reaction center protein OS=Acorus calamus OX=4465 GN=psbC PE=3 SV=2)

HSP 1 Score: 152.9 bits (385), Expect = 3.3e-36
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 40  RRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAM 99
           RRFYPVETLFNGTLALAGRDQETTGFAWWAGNAR +NLSGKLLGAHVAHAGLIVFWAGAM
Sbjct: 8   RRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAM 67

Query: 100 NLFEVAHFVPEKPI 114
           NLFEVAHFVPEKP+
Sbjct: 68  NLFEVAHFVPEKPM 81

[Close]

BLAST of Lag0000988 vs. ExPASy Swiss-Prot
Match: Q70Y07 (Photosystem II CP43 reaction center protein OS=Amborella trichopoda OX=13333 GN=psbC PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.3e-36
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 40  RRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAM 99
           RRFYPVETLFNGTLALAGRDQETTGFAWWAGNAR +NLSGKLLGAHVAHAGLIVFWAGAM
Sbjct: 8   RRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAM 67

Query: 100 NLFEVAHFVPEKPI 114
           NLFEVAHFVPEKP+
Sbjct: 68  NLFEVAHFVPEKPM 81

[Close]

BLAST of Lag0000988 vs. ExPASy Swiss-Prot
Match: A6MM32 (Photosystem II CP43 reaction center protein OS=Buxus microphylla OX=153571 GN=psbC PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.3e-36
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 40  RRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAM 99
           RRFYPVETLFNGTLALAGRDQETTGFAWWAGNAR +NLSGKLLGAHVAHAGLIVFWAGAM
Sbjct: 8   RRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAM 67

Query: 100 NLFEVAHFVPEKPI 114
           NLFEVAHFVPEKP+
Sbjct: 68  NLFEVAHFVPEKPM 81

[Close]

BLAST of Lag0000988 vs. ExPASy Swiss-Prot
Match: Q7YJX6 (Photosystem II CP43 reaction center protein OS=Calycanthus floridus var. glaucus OX=212734 GN=psbC PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.3e-36
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 40  RRFYPVETLFNGTLALAGRDQETTGFAWWAGNARQLNLSGKLLGAHVAHAGLIVFWAGAM 99
           RRFYPVETLFNGTLALAGRDQETTGFAWWAGNAR +NLSGKLLGAHVAHAGLIVFWAGAM
Sbjct: 8   RRFYPVETLFNGTLALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAM 67

Query: 100 NLFEVAHFVPEKPI 114
           NLFEVAHFVPEKP+
Sbjct: 68  NLFEVAHFVPEKPM 81

The following BLAST results are available for this feature:

BLAST of Lag0000988 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_010048629.1	1.3e-34	90.00	photosystem II CP43 chlorophyll apoprotein [Quercus acuta] >QPK76998.1 photosyst...	[more]
KAG9438608.1	3.8e-34	92.31	hypothetical protein H6P81_021450 [Aristolochia fimbriata]	[more]
KAG9438488.1	3.8e-34	92.31	hypothetical protein H6P81_021569 [Aristolochia fimbriata]	[more]
YP_009390805.1	1.9e-33	94.67	photosystem II CP43 chlorophyll apoprotein [Punica granatum] >ARV87268.1 photosy...	[more]
YP_009092299.1	1.9e-33	94.67	photosystem II CP43 chlorophyll apoprotein [Macadamia integrifolia] >YP_00944542...	[more]

BLAST of Lag0000988 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A9LYI1	3.3e-36	95.95	Photosystem II CP43 reaction center protein OS=Acorus americanus OX=263995 GN=ps...	[more]
Q3V538	3.3e-36	95.95	Photosystem II CP43 reaction center protein OS=Acorus calamus OX=4465 GN=psbC PE...	[more]
Q70Y07	3.3e-36	95.95	Photosystem II CP43 reaction center protein OS=Amborella trichopoda OX=13333 GN=...	[more]
A6MM32	3.3e-36	95.95	Photosystem II CP43 reaction center protein OS=Buxus microphylla OX=153571 GN=ps...	[more]
Q7YJX6	3.3e-36	95.95	Photosystem II CP43 reaction center protein OS=Calycanthus floridus var. glaucus...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 63..114 e-value: 7.6E-21 score: 74.4
IPR000932	Photosystem antenna protein-like	PANTHER	PTHR33180	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 53..113
None	No IPR available	PANTHER	PTHR33180:SF16	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 53..113
IPR036001	Photosystem antenna protein-like superfamily	SUPERFAMILY	161077	Photosystem II antenna protein-like	coord: 60..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0000988.1	Lag0000988.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
cellular_component	GO:0009521	photosystem
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0046872	metal ion binding