Lag0000977 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0000977
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr4: 21633464 .. 21634056 (-)
RNA-Seq Expression	Lag0000977
Synteny	Lag0000977

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTCTTATCTAGGAAACAGCATGTTAGGTCTTTTGATAGCCCTCTCTTAGCCTGATGTTACCCATCTTCCTTCTCTACGACCACCCAGGAACTCGAACATAAGCTAGACAGAAGCCCTCTCGTTGACAACCGCTACGGGATAGGAAGATCCAACAGGCTCGACCTGCCTCCGAGTTGGAGGAAGCTCCAACTAGCCATATCTAAAGCCTTGGATTCGACCCCCGGCATAATATCCCAACTACTTATTTCCCATTCCTCTCCCCTGGACCCGGAGCAAAGGGAGGTAACCCTATACAAACAAAGGCATCAGGAACGAATGAAAGAGCAGCGACTTCTCGCTCTTCAAGTCCATATCCAGATTCCAATGCTTTAGCCCATATCTCCATCTTCTGGCAAAGCAGATCTTTCTCCCTCAACCTTCACTCACTGGATCGAAGCTATCAACTAACGAGTGAAGCTTATCTCAACCATCCCTCTGCCTCAAGGCAATGCACTCCGGGCTCAGAAGCACCAGAACCTGCTGTAGCTGCATATGACCCTCGAAAGGAAGTACCAGCGAAGAGGCTCCTGGATCAAATGCCTCTCTGA

mRNA sequence

ATGGGATTCTTATCTAGGAAACAGCATGTTAGCCTTGGATTCGACCCCCGGCATAATATCCCAACTACTTATTTCCCATTCCTCTCCCCTGGACCCGGAGCAAAGGGAGGTAACCCTATACAAACAAAGGCATCAGGAACGAATGAAAGAGCAGCGACTTCTCGCTCTTCAAGTCCATATCCAGATTCCAATGCTTTAGCCCATATCTCCATCTTCTGGCAAAGCAGATCTTTCTCCCTCAACCTTCACTCACTGGATCGAAGCTATCAACTAACGAGTGAAGCTTATCTCAACCATCCCTCTGCCTCAAGGCAATGCACTCCGGGCTCAGAAGCACCAGAACCTGCTGTAGCTGCATATGACCCTCGAAAGGAAGTACCAGCGAAGAGGCTCCTGGATCAAATGCCTCTCTGA

Coding sequence (CDS)

ATGGGATTCTTATCTAGGAAACAGCATGTTAGCCTTGGATTCGACCCCCGGCATAATATCCCAACTACTTATTTCCCATTCCTCTCCCCTGGACCCGGAGCAAAGGGAGGTAACCCTATACAAACAAAGGCATCAGGAACGAATGAAAGAGCAGCGACTTCTCGCTCTTCAAGTCCATATCCAGATTCCAATGCTTTAGCCCATATCTCCATCTTCTGGCAAAGCAGATCTTTCTCCCTCAACCTTCACTCACTGGATCGAAGCTATCAACTAACGAGTGAAGCTTATCTCAACCATCCCTCTGCCTCAAGGCAATGCACTCCGGGCTCAGAAGCACCAGAACCTGCTGTAGCTGCATATGACCCTCGAAAGGAAGTACCAGCGAAGAGGCTCCTGGATCAAATGCCTCTCTGA

Protein sequence

MGFLSRKQHVSLGFDPRHNIPTTYFPFLSPGPGAKGGNPIQTKASGTNERAATSRSSSPYPDSNALAHISIFWQSRSFSLNLHSLDRSYQLTSEAYLNHPSASRQCTPGSEAPEPAVAAYDPRKEVPAKRLLDQMPL

Homology

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BLAST of Lag0000977 vs. NCBI nr
Match: KAF5179186.1 (hypothetical protein FRX31_031226 [Thalictrum thalictroides])

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-19
Identity = 60/82 (73.17%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 56  SSSPYPDSNALAHISIFWQSRSFSLNLHSLDRSYQLTSEAYLNHPSASRQCTPGSEAPEP 115
           S SP P  N   H     + R       S DRSYQLTSEAYLNHPSASRQCTPGSEAPEP
Sbjct: 60  SISPKPTLNEALHSPQLSRQR-------SEDRSYQLTSEAYLNHPSASRQCTPGSEAPEP 119

Query: 116 AVAAYDPRKEVPAKRLLDQMPL 138
           AVAAYDPRKEVPAKRLLDQMPL
Sbjct: 120 AVAAYDPRKEVPAKRLLDQMPL 134

The following BLAST results are available for this feature:

BLAST of Lag0000977 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF5179186.1	1.2e-19	73.17	hypothetical protein FRX31_031226 [Thalictrum thalictroides]	[more]

BLAST of Lag0000977 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0000977.1	Lag0000977.1	mRNA