Lag0000796 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0000796
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ulp1-like peptidase
Location	chr4: 16752155 .. 16752496 (+)
RNA-Seq Expression	Lag0000796
Synteny	Lag0000796

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGATTGCGTTATGGGTCGACACTCGAACCATGATACACATTGGAGTACAGTTGATGCGATCTACATGTCATTCAACCTCGGGGGAAACCATTGGGTTATGGTATGTGCTGATTTCCTAGTGGGCAAGTTGACCGTCCTCGATTCATTCATAGCGCCGACATCCGATTCAACCTTGAAGAAAGAGTTGAGCGCTTTAGCCATAGTATTGTCGGTGTTACTGTTCAAGTGCGATGTCATGAAGGCAAAGCCGCATCTCCCAGTTCACGAATGGGAAATACATAAAGATAGTTCAGTGCCTCAACAGACGAACGGTGGGACTGTGGTATGTTCGCAGTAA

mRNA sequence

ATGATGGATTGCGTTATGGGTCGACACTCGAACCATGATACACATTGGAGTACAGTTGATGCGATCTACATGTCATTCAACCTCGGGGGAAACCATTGGGTTATGGTATGTGCTGATTTCCTAGTGGGCAAGTTGACCGTCCTCGATTCATTCATAGCGCCGACATCCGATTCAACCTTGAAGAAAGAGTTGAGCGCTTTAGCCATAGTATTGTCGGTGTTACTGTTCAAGTGCGATGTCATGAAGGCAAAGCCGCATCTCCCAGTTCACGAATGGGAAATACATAAAGATAGTTCAGTGCCTCAACAGACGAACGGTGGGACTGTGGTATGTTCGCAGTAA

Coding sequence (CDS)

ATGATGGATTGCGTTATGGGTCGACACTCGAACCATGATACACATTGGAGTACAGTTGATGCGATCTACATGTCATTCAACCTCGGGGGAAACCATTGGGTTATGGTATGTGCTGATTTCCTAGTGGGCAAGTTGACCGTCCTCGATTCATTCATAGCGCCGACATCCGATTCAACCTTGAAGAAAGAGTTGAGCGCTTTAGCCATAGTATTGTCGGTGTTACTGTTCAAGTGCGATGTCATGAAGGCAAAGCCGCATCTCCCAGTTCACGAATGGGAAATACATAAAGATAGTTCAGTGCCTCAACAGACGAACGGTGGGACTGTGGTATGTTCGCAGTAA

Protein sequence

MMDCVMGRHSNHDTHWSTVDAIYMSFNLGGNHWVMVCADFLVGKLTVLDSFIAPTSDSTLKKELSALAIVLSVLLFKCDVMKAKPHLPVHEWEIHKDSSVPQQTNGGTVVCSQ

Homology

[Close]

BLAST of Lag0000796 vs. NCBI nr
Match: XP_022154364.1 (uncharacterized protein LOC111021646 [Momordica charantia])

HSP 1 Score: 92.4 bits (228), Expect = 2.6e-15
Identity = 42/107 (39.25%), Postives = 66/107 (61.68%), Query Frame = 0


Query: 1   MMDCVMGRHSNHDTHWSTVDAIYMSFNLGGNHWVMVCADFLVGKLTVLDSFIAPTSDSTL 60
           M+  + G HS++DT W  VDA+Y+ +N+GG HW+++C DF  G+L V DSF+  T    L
Sbjct: 62  MLSYIDGTHSDNDTRWMDVDAVYLPYNIGGVHWIVICIDFDEGELIVWDSFMNMTPLPQL 121

Query: 61  KKELSALAIVLSVLLFKCDVMKAKPHLPVHEWEIHKDSSVPQQTNGG 108
           ++EL  +  ++  L+ +  V   KP++P+  W I + SS PQQ   G
Sbjct: 122 EQELKPMITIIPTLICRVGVHLYKPNIPLTPWRIRRVSSAPQQGMDG 168

[Close]

BLAST of Lag0000796 vs. NCBI nr
Match: XP_022156568.1 (uncharacterized protein LOC111023442 [Momordica charantia])

HSP 1 Score: 91.3 bits (225), Expect = 5.9e-15
Identity = 40/99 (40.40%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 9   HSNHDTHWSTVDAIYMSFNLGGNHWVMVCADFLVGKLTVLDSFIAPTSDSTLKKELSALA 68
           HS++   W  V+A+Y+ FN+ GNHWVM+C DF+ G++ V DS  A TS ++L+++L  + 
Sbjct: 8   HSDYPLKWREVEAVYLPFNVNGNHWVMICIDFVEGEIVVWDSLRAITSYASLEEQLKVMH 67

Query: 69  IVLSVLLFKCDVMKAKPHLPVHEWEIHKDSSVPQQTNGG 108
            V+  LL K  V+  +P+LP+  W I + +S P+Q + G
Sbjct: 68  TVIPSLLHKSQVIAVRPNLPMTPWRIRRVTSTPEQFSSG 106

[Close]

BLAST of Lag0000796 vs. NCBI nr
Match: XP_022141784.1 (uncharacterized protein LOC111012067 [Momordica charantia])

HSP 1 Score: 89.7 bits (221), Expect = 1.7e-14
Identity = 40/95 (42.11%), Postives = 62/95 (65.26%), Query Frame = 0


Query: 9   HSNHDTHWSTVDAIYMSFNLGGNHWVMVCADFLVGKLTVLDSFIAPTSDSTLKKELSALA 68
           HSN+   W  V+A+Y+ FN+ GN+WVM+C DF+ G++ V DS  A T D++L+++L  + 
Sbjct: 8   HSNYPLKWREVEAVYLPFNVNGNYWVMICIDFVEGEIVVWDSLRAITLDASLEEQLEVMR 67

Query: 69  IVLSVLLFKCDVMKAKPHLPVHEWEIHKDSSVPQQ 104
            V+  LL K  V+   P+LP+  W I + +S PQQ
Sbjct: 68  TVIPSLLHKSQVIAVHPNLPMIPWRIRRVTSAPQQ 102

[Close]

BLAST of Lag0000796 vs. NCBI nr
Match: XP_022155154.1 (uncharacterized protein LOC111022296 [Momordica charantia])

HSP 1 Score: 87.4 bits (215), Expect = 8.4e-14
Identity = 37/92 (40.22%), Postives = 60/92 (65.22%), Query Frame = 0


Query: 16  WSTVDAIYMSFNLGGNHWVMVCADFLVGKLTVLDSFIAPTSDSTLKKELSALAIVLSVLL 75
           W  V+A+Y+ FN+  NHWVM+C DF+ G++ V DS +A T D++L+++L+ +  V+  LL
Sbjct: 25  WREVEAVYLPFNVNDNHWVMICIDFVEGEIVVWDSLMAITPDASLEEQLNVMRAVIPPLL 84

Query: 76  FKCDVMKAKPHLPVHEWEIHKDSSVPQQTNGG 108
            K   +  +P+LP+  W I + +S PQQ   G
Sbjct: 85  HKSQAITVRPNLPMTPWRISRVTSTPQQFGSG 116

[Close]

BLAST of Lag0000796 vs. NCBI nr
Match: XP_022148308.1 (uncharacterized protein LOC111016993 [Momordica charantia])

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-13
Identity = 37/83 (44.58%), Postives = 55/83 (66.27%), Query Frame = 0


Query: 7   GRHSNHDTHWSTVDAIYMSFNLGGNHWVMVCADFLVGKLTVLDSFIAPTSDSTLKKELSA 66
           G H+++   W  VDAIY+ FN+ G HWVMVC D   G++ V DS  + T+D  ++  L  
Sbjct: 210 GTHTDYPLRWMEVDAIYIPFNIRGKHWVMVCIDLEEGEIVVWDSLNSMTTDHAMEDHLKV 269

Query: 67  LAIVLSVLLFKCDVMKAKPHLPV 90
           +  ++ V+LFKCDVMK +P+LP+
Sbjct: 270 MHTIIPVMLFKCDVMKVQPNLPI 292

The following BLAST results are available for this feature:

BLAST of Lag0000796 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154364.1	2.6e-15	39.25	uncharacterized protein LOC111021646 [Momordica charantia]	[more]
XP_022156568.1	5.9e-15	40.40	uncharacterized protein LOC111023442 [Momordica charantia]	[more]
XP_022141784.1	1.7e-14	42.11	uncharacterized protein LOC111012067 [Momordica charantia]	[more]
XP_022155154.1	8.4e-14	40.22	uncharacterized protein LOC111022296 [Momordica charantia]	[more]
XP_022148308.1	1.4e-13	44.58	uncharacterized protein LOC111016993 [Momordica charantia]	[more]

BLAST of Lag0000796 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003653	Ulp1 protease family, C-terminal catalytic domain	PFAM	PF02902	Peptidase_C48	coord: 17..107 e-value: 1.1E-9 score: 38.5
None	No IPR available	GENE3D	3.40.395.10	Adenoviral Proteinase; Chain A	coord: 5..111 e-value: 8.7E-11 score: 43.6
IPR038765	Papain-like cysteine peptidase superfamily	SUPERFAMILY	54001	Cysteine proteinases	coord: 13..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0000796.1	Lag0000796.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity