Lag0000783 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000783
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein LOC111022007
Locationchr4: 16473254 .. 16474041 (-)
RNA-Seq ExpressionLag0000783
SyntenyLag0000783
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGAAACATTGAAGTTGGTGGCCAACAAGGGTGTTCAATGGAAAGAGTCCCAAACTAAGGTGAAGACATTAGTGCCAAGCGAACTCAAGCCAGAATCAGCAGTGTGGCTTCACTTTATAAAGAACAGATTGATGCCAACAACCCATGATAACACCATTTCAGTAGAGAGAGTTATGCTCCTCTACATTATTATGAAGGCTTTAGAAATCAACATTGGGAGCATTATTAGGGAGGAAATCCTTGCATGTGGAAGGAAGAAAGCAAGGAAGCTTTTCTTTGGGTCACTTATTACCCAATTAAGTTAGAGGGTAAAGATAGTTCCTAGTAAGGATGAAGAGCGTCACTTCTTCAAGCCTAACAGCAACCTGTCCTTGATTGGGAAGCTCCAACAGAACAATGCCCAAAGAAATGACAAAGCTTCCACATGTCAAGCCACTCCACCATTAGGGTTGAATCTGGCTTCTCATCCTCAACACACTCCTTTTTTAGGGCCCTCACCATCATCGAAAGCCCTAGCAATTGCCTATCAACAACTGGCAGGGACAACCTGAGGACTTATTGGGCTTATGCTAAGGAGACAGATGAAGCCATTAGAGAGTTCTACCTCTCTATCGCCCGAGTATTGGTCCTGTCTTTCCTGATTTACCTTAATCGTTGCTGCCTCAAGAAGAAAAGGATTCTGAAGATGAAGATGAAGAAGATGAAGAAGATGAAAGAGAAATTCCCTCAGATGAGGCTAGGGGAGTTTTCTGATCCCCTTTTACATGCGTTTTTTGGTGAATAA

mRNA sequence

ATGAAAGAAACATTGAAGTTGGTGGCCAACAAGGGTGTTCAATGGAAAGAGTCCCAAACTAAGGTGAAGACATTAGTGCCAAGCGAACTCAAGCCAGAATCAGCAGTGTGGCTTCACTTTATAAAGAACAGATTGATGCCAACAACCCATGATAACACCATTTCAGTAGAGAGAGTTATGCTCCTCTACATTATTATGAAGGCTTTAGAAATCAACATTGGGAGCATTATTAGGGAGGAAATCCTTGCATGTGGAAGGAAGAAAGCAAGGAAGCTTTTCTTTGGGGCCCTCACCATCATCGAAAGCCCTAGCAATTGCCTATCAACAACTGGCAGGGACAACCTGAGGACTTATTGGGCTTATGCTAAGGAGACAGATGAAGCCATTAGAGAGTTCTACCTCTCTATCGCCCGAGTATTGGTCCTGTCTTTCCTGATTTACCTTAATCGTTGCTGCCTCAAGAAGAAAAGGATTCTGAAGATGAAGATGAAGAAGATGAAGAAGATGAAAGAGAAATTCCCTCAGATGAGGCTAGGGGAGTTTTCTGATCCCCTTTTACATGCGTTTTTTGGTGAATAA

Coding sequence (CDS)

ATGAAAGAAACATTGAAGTTGGTGGCCAACAAGGGTGTTCAATGGAAAGAGTCCCAAACTAAGGTGAAGACATTAGTGCCAAGCGAACTCAAGCCAGAATCAGCAGTGTGGCTTCACTTTATAAAGAACAGATTGATGCCAACAACCCATGATAACACCATTTCAGTAGAGAGAGTTATGCTCCTCTACATTATTATGAAGGCTTTAGAAATCAACATTGGGAGCATTATTAGGGAGGAAATCCTTGCATGTGGAAGGAAGAAAGCAAGGAAGCTTTTCTTTGGGGCCCTCACCATCATCGAAAGCCCTAGCAATTGCCTATCAACAACTGGCAGGGACAACCTGAGGACTTATTGGGCTTATGCTAAGGAGACAGATGAAGCCATTAGAGAGTTCTACCTCTCTATCGCCCGAGTATTGGTCCTGTCTTTCCTGATTTACCTTAATCGTTGCTGCCTCAAGAAGAAAAGGATTCTGAAGATGAAGATGAAGAAGATGAAGAAGATGAAAGAGAAATTCCCTCAGATGAGGCTAGGGGAGTTTTCTGATCCCCTTTTACATGCGTTTTTTGGTGAATAA

Protein sequence

MKETLKLVANKGVQWKESQTKVKTLVPSELKPESAVWLHFIKNRLMPTTHDNTISVERVMLLYIIMKALEINIGSIIREEILACGRKKARKLFFGALTIIESPSNCLSTTGRDNLRTYWAYAKETDEAIREFYLSIARVLVLSFLIYLNRCCLKKKRILKMKMKKMKKMKEKFPQMRLGEFSDPLLHAFFGE
Homology
[Close]
BLAST of Lag0000783 vs. NCBI nr
Match: PON50458.1 (hypothetical protein PanWU01x14_223230, partial [Parasponia andersonii])

HSP 1 Score: 85.9 bits (211), Expect = 4.2e-13
Identity = 42/95 (44.21%), Postives = 59/95 (62.11%), Query Frame = 0 

Query: 5   LKLVANKGVQWKESQTKVKTLVPSELKPESAVWLHFIKNRLMPTTHDNTISVERVMLLYI 64
           L+ VA  G +W  S   V T + S L P + +W HF+K+RL+PTTH   +S ERV+LLY 
Sbjct: 62  LETVAIAGAEWNVSSQGVYTCLRSSLNPPAKIWYHFLKSRLLPTTHGKIVSKERVLLLYS 121

Query: 65  IMKALEINIGSIIREEILACGRKKARKLFFGALTI 100
           ++    IN+G +I  EI AC  +K+  LFF +L I
Sbjct: 122 MLTGKSINMGRMIHREICACAARKSGALFFPSLII 156

[Close]
BLAST of Lag0000783 vs. NCBI nr
Match: PON62892.1 (hypothetical protein PanWU01x14_135680 [Parasponia andersonii])

HSP 1 Score: 83.6 bits (205), Expect = 2.1e-12
Identity = 42/93 (45.16%), Postives = 57/93 (61.29%), Query Frame = 0 

Query: 5   LKLVANKGVQWKESQTKVKTLVPSELKPESAVWLHFIKNRLMPTTHDNTISVERVMLLYI 64
           L+ VA  G +W  S     T + S L P + VW HF+K+RL+PTTH  T+S ERV+LLY 
Sbjct: 52  LETVAIAGAEWNVSSQGAYTCLRSSLNPPAKVWYHFLKSRLLPTTHGKTVSKERVLLLYS 111

Query: 65  IMKALEINIGSIIREEILACGRKKARKLFFGAL 98
           ++    IN+G II  EI A   +K+  LFF +L
Sbjct: 112 MLTGKSINVGQIIHREICAYAARKSGALFFPSL 144

[Close]
BLAST of Lag0000783 vs. NCBI nr
Match: PON44141.1 (hypothetical protein PanWU01x14_268850 [Parasponia andersonii])

HSP 1 Score: 83.2 bits (204), Expect = 2.7e-12
Identity = 41/93 (44.09%), Postives = 57/93 (61.29%), Query Frame = 0 

Query: 5   LKLVANKGVQWKESQTKVKTLVPSELKPESAVWLHFIKNRLMPTTHDNTISVERVMLLYI 64
           L+ VA  GV+W  S       + S L P + VW HF+K+ L+PTTH   +S ERV+LLY 
Sbjct: 93  LETVAIAGVEWNVSFQGAYIYLRSSLNPHAKVWYHFLKSHLLPTTHGKIVSKERVLLLYS 152

Query: 65  IMKALEINIGSIIREEILACGRKKARKLFFGAL 98
           ++    IN+G +I  EI AC  +K+R LFF +L
Sbjct: 153 MLTGKSINVGRMIHREICACAARKSRALFFPSL 185

[Close]
BLAST of Lag0000783 vs. NCBI nr
Match: PON70375.1 (hypothetical protein PanWU01x14_080440 [Parasponia andersonii])

HSP 1 Score: 82.8 bits (203), Expect = 3.5e-12
Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 0 

Query: 5   LKLVANKGVQWKESQTKVKTLVPSELKPESAVWLHFIKNRLMPTTHDNTISVERVMLLYI 64
           L+ VA  G +W  S     T + S L P + VW HF+K+RL+PTTH  T+S E V LLY 
Sbjct: 166 LETVAIVGAEWNVSSQGAYTCLRSSLNPPAKVWYHFLKSRLLPTTHGKTVSKEHVSLLYS 225

Query: 65  IMKALEINIGSIIREEILACGRKKARKLFFGAL 98
           ++    IN+G +I  EI AC  +K+  LFF +L
Sbjct: 226 MLTGKSINVGRMIHREICACAARKSGALFFPSL 258

[Close]
BLAST of Lag0000783 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 80.5 bits (197), Expect = 1.8e-11
Identity = 39/93 (41.94%), Postives = 57/93 (61.29%), Query Frame = 0 

Query: 5   LKLVANKGVQWKESQTKVKTLVPSELKPESAVWLHFIKNRLMPTTHDNTISVERVMLLYI 64
           L+ VA  G +W  S     T + S L P + VW HF+K+RL+PTTH  T+S +R++LL+ 
Sbjct: 145 LETVAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLHS 204

Query: 65  IMKALEINIGSIIREEILACGRKKARKLFFGAL 98
           ++    IN+G +I  EI AC  +K   LFF +L
Sbjct: 205 MLIGKSINVGRMIHSEIRACAARKTGALFFPSL 237

The following BLAST results are available for this feature:
BLAST of Lag0000783 vs. NCBI nr
Match NameE-valueIdentityDescription
PON50458.14.2e-1344.21hypothetical protein PanWU01x14_223230, partial [Parasponia andersonii][more]
PON62892.12.1e-1245.16hypothetical protein PanWU01x14_135680 [Parasponia andersonii][more]
PON44141.12.7e-1244.09hypothetical protein PanWU01x14_268850 [Parasponia andersonii][more]
PON70375.13.5e-1244.09hypothetical protein PanWU01x14_080440 [Parasponia andersonii][more]
PON46472.11.8e-1141.94hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii][more]
BLAST of Lag0000783 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000783.1Lag0000783.1mRNA