Lag0000774 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000774
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotransposon gag protein
Locationchr4: 15685472 .. 15690298 (+)
RNA-Seq ExpressionLag0000774
SyntenyLag0000774
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGATAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAATCCTGCAAATGAAAGATATGATCAAGACCATGACAAAGATAAGAGCTTTTAAATATAAAAGCTCATTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGTGCAAAAAAAATCTTGAACTACGTTATGACTTGATCCCTATTCCATAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCTCTATAAACAAAAAAAAAGGTTCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTCCATCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCAAATTCGAAGGTTCTCACATGCTTCGCTGCAGTTCCTTCTTCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTGCTTCGCTGCAGTTCCTTCTTTCCAAGGTCGAAGGTTCTCACGTGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGTTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCTCACAATTTGAAGGTTCTCACGCGCTTCGGTGAAGTTCCTTCCTCCAAGTCTGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTTCTTCTCCCTAAGTTCGAAGGTTCTCACGCGCTTCGATGCAGTTCCTTCCTCCCTAAGTTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGAAGGTTCTCACGCGCTGTGATTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCAAGCGCTTCGCTGCACAGTTCCTTCCTCCAAGTTTGAAGGTTCTCATGCACTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCACTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTATCTCCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCAGTTGACGTCCTCGTTCTGCTTCATCTTCAAATGTTGGTAGTTGACGGCATCCGTTGCGCTTCATCTTCAAATGTTGGCAGTTGACGGCGTCCGCTTCGCTTCATCTTCAAAAATTGACTGTTGATAACTTCACTTCATATTCAAAAGTTGACGGTTGAAGTCTTCGCTACATCTGCAAAGATGAACAACTTTAGTGTTGCCTTTATCTTGAAAGTGTCCAGACTGGAAGATGCATCTTAGCTGCAAGTTAAAAAATGCTTGATATCAAACCACAAAAAAAAAAAAAAAGAAAGAAAGACAATAAAAGTGTTGTTAAAAAAACGGTGACCACCCCTGCAGGAAACTACAATCATCAAAGTGACTGGTCTAGACAGGTGGTGAAGTCACTGCAATTGAATCTGATGACGACCGTTGTAGGCGAGTCGAGTCTGGTGACCACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGACTGGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCACTGAAGGCGAGTCTGATGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCACTGAAGGCGAGTTTGATGATTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGGTCTAGCAGGAGTGCATCGCTGTAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATGAAATAGGGGACTGGTCTAGCAGGAGTGAGATCACTGCAAGTGAAGCTGGTGGCGACCGTTGCACGAAGCTTACACATTCAAGCAAGAAAGAAACAAATTGCAATAATATATGTGCAAAGAAAAGAAATGGAAGCCAAAAGCTCTATAGTACAATCAAAGCAATTCATATGAGCGACATCCAATAAGGACATACATGGAATATATATGCAGATTAAAAAAAAAAAAAACGAAAAGTAAAAAAAAATATAAAAACGAAAAAATAAAAAAATAAAAAATAAAAAAGAGAAGAAAGTTTCCTACCTGGATCCTTTCTTGAATGCTCTCTGCAATTGATGTGTGCTCTCCCCTACTGAGGTTCAGTCTTATTTATAGGGGGAGTTTTAAGTTCAAATCAAAGGTTTAGATAAAGATTTGACTCAAATGAAATCCTATCTCCGGTTCAAAATTTTATAAGATAATCTTTATCTTTATCTGAACCAACTTAATTAAATTGAAATTCCTAAAAGATAAGTGTTTCAATTCAAATCAATTTGGGAATTCAAATTTTATCTGAATAATTTTATTTGCGCATACTCCAAATTTTCTTCCAAATCAAAATTTGAGATTCAAACATCAAATTCTATTCCAAATGCAAGTTTGAATTTGGTAAAATTTTACCTCAAATTATATTTTGGGCATAATCCAAATTTTATCCCAAATGGACCAAAGTCCAAACCTCAAGATGTATTCCATATGCAAGTTAAAATTGGGTAATATTTTACCTCAAATCAAAATTTGGGTATAAACCAAATTTTGCCCAAACTTGAAATCAAAGTTTGCTGCCAAACAAGGAAAATCAAAATTTTGACCAAACCTCAAATTTTGATTAATTGGCAATAAAAGTGTGTCAAATAAAAAAATCAAAATTTTGACCAAAATTCATATTTTGATTAAATTGACGCACCAAATGGAGTCAAAGTCAAGAACAAATACCTTTCATTTTAATTCCAAAATATATTTTTCGAGATTCACTCACACATAACTTGTGCCTAAATCTCGAAAAAGGGGCATTTGTTGAAGGAGAAATTTTGGCCAATCACAAATTGCCACGTCACTAATATAAATTAATGATAAAATAAATTTGGGACCAGTTACACATTTACACGTGTGCCTAAATTAAATTAATAGACATTAAAATTTGGCAAATCAAAGAATGCCACTTGTCTATTAGTGATCCATCAGATAACATCAGCCAAGTTCAATCAGATTATGCCACGTGGCAATTGGACCCAAGCCCAAGCCCATATGAGGTCCATCAAACTCTATAAATAGAGGAGGCCACCATTCATTCTGGGGGATTCAGCCAGAGGCAGAGAGGGTAGAGTCCAGAGCATTCTCCCAAGATCCAGAGTCGTTAGAATCCAAAGAGTCCAGAGAATTCAGAGATCCGAGATTTAGAATTCAAAGGATTCAAGACTCAGAAGATTTGAAGACTAGAAGACTCTAAAAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAACAGGCTAATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAAATCAACAAGCCAACAGGCCGATCAAAGAGATCATCAAGTCAACAGACCGATCATCCAGGAGGATCAACAAGCTAACAACCGATCCAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAACCGATCCAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGTCGATCCAACAGATCATCAAGCCAACAGGCTGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCTGATCCAAGAGATCAACAAGACAATCGACTGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCGAAGAGATCAACAAGCCAATCGACCGATCAAGAAGATTAA

mRNA sequence

ATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGATAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTCCATCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCAAATTCGAAGGTTCTCACATGCTTCGCTGCAGTTCCTTCTTCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTGCTTCGCTGCAGTTCCTTCTTTCCAAGGTCGAAGGTTCTCACGTGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGTTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTTCTTCTCCCTAAGTTCGAAGGTTCTCACGCGCTTCGATGCAGTTCCTTCCTCCCTAAGTTCGAAGTTCCTTCCTCCAAGTTCGAAGGTTCTCAAGCGCTTCGCTGCACAGTTCCTTCCTCCAAGTTTGAAGGTTCTCATGCACTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCACTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTATCTCCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCAGTTGACGTCCTCGTTCTGCTTCATCTTCAAATGTTGACAGGTGGTGAAGTCACTGCAATTGAATCTGATGACGACCGTTGTAGGCGAGTCGAGTCTGGTGACCACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGACTGGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATGAAATAGGGGACTGGTCTAGCAGGAGTGAGATCACTGCAAGTGAAGCTGGTGGCGACCGTTGCACGAAGCTTACACATTCAAGCAAGAAAGAAACAAATTGCAATAATATATGTGCAAAGAAAAGAAATGGAAGCCAAAAGCTCTATACCGATCCAACAAATCAACAAGCCAACAGGCCGATCAAAGAGATCATCAAGTCAACAGACCGATCATCCAGGAGGATCAACAAGCTAACAACCGATCCAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAACCGATCCAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGTCGATCCAACAGATCATCAAGCCAACAGGCTGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCTGATCCAAGAGATCAACAAGACAATCGACTGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCGAAGAGATCAACAAGCCAATCGACCGATCAAGAAGATTAA

Coding sequence (CDS)

ATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGATAAGAAGCTTCATAGTAGCATCCCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTCCATCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGGAGTTTCTTCTCCCAAATTCGAAGGTTCTCACATGCTTCGCTGCAGTTCCTTCTTCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTGCTTCGCTGCAGTTCCTTCTTTCCAAGGTCGAAGGTTCTCACGTGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGTTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTTCTTCTCCCTAAGTTCGAAGGTTCTCACGCGCTTCGATGCAGTTCCTTCCTCCCTAAGTTCGAAGTTCCTTCCTCCAAGTTCGAAGGTTCTCAAGCGCTTCGCTGCACAGTTCCTTCCTCCAAGTTTGAAGGTTCTCATGCACTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCACTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTATCTCCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCAGTTGACGTCCTCGTTCTGCTTCATCTTCAAATGTTGACAGGTGGTGAAGTCACTGCAATTGAATCTGATGACGACCGTTGTAGGCGAGTCGAGTCTGGTGACCACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGACTGGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATGAAATAGGGGACTGGTCTAGCAGGAGTGAGATCACTGCAAGTGAAGCTGGTGGCGACCGTTGCACGAAGCTTACACATTCAAGCAAGAAAGAAACAAATTGCAATAATATATGTGCAAAGAAAAGAAATGGAAGCCAAAAGCTCTATACCGATCCAACAAATCAACAAGCCAACAGGCCGATCAAAGAGATCATCAAGTCAACAGACCGATCATCCAGGAGGATCAACAAGCTAACAACCGATCCAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAACCGATCCAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGTCGATCCAACAGATCATCAAGCCAACAGGCTGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCTGATCCAAGAGATCAACAAGACAATCGACTGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCGAAGAGATCAACAAGCCAATCGACCGATCAAGAAGATTAA

Protein sequence

MSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRMKRKFSVLINTEGSLKFEGSSLYPAALFLLQVRGFSVVRLLRCSSSKCEGSYVVRCCIVPSSLKFDGSHAALLEFLLPNSKVLTCFAAVPSSKFEGSHVASLQFLPPSSKVLTCFAAVPSFQGRRFSRAALQFFLPKFEGSRTSLQFLLPNSKVLTRFVQFLPPNSKVLTRFAAVPSSKFEVPSPKFEGSHALRCSFFSLSSKVLTRFDAVPSSLSSKFLPPSSKVLKRFAAQFLPPSLKVLMHFVATFLQVRRFSHALLQLLPPSSKVPSRASLAPSPSSKALLSTAPSPSSKALISVATFLQVRRFSHALLQFLPPSSKVPSRASLAPSPSSKALLSTAPSPSSKVLLSTPLFEGSPLRFSFSKFEGSPLLLFKCLAAVDVLVLLHLQMLTGGEVTAIESDDDRCRRVESGDHPCRLLRSPNKMGLGLAGVHEGESGDYPCRLLRSPNKMGTGLAGVHEGESGDYPCRLLRSPNEIGDWSSRSEITASEAGGDRCTKLTHSSKKETNCNNICAKKRNGSQKLYTDPTNQQANRPIKEIIKSTDRSSRRINKLTTDPTDHQANRPIQEIIKSAGRSSKRINKLTTDPTDHQANRPIQEIIKSAGRSSKRINKLTSRSNRSSSQQADPRDQQANRPIKKINKSAGRSSKRINKLTSRSNRSSSQQADPRDQQDNRLIKKINKSAGRSSKRSTSQSTDQED
Homology
[Close]
BLAST of Lag0000774 vs. NCBI nr
Match: KAA0041559.1 (hypothetical protein E6C27_scaffold93G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 2.5e-16
Identity = 68/164 (41.46%), Postives = 88/164 (53.66%), Query Frame = 0 

Query: 5   TRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIP 64
           TR S F+RLS+STSKK+R STS FDRLK+ NDQ +R+M +L+ K F E N D K+HS +P
Sbjct: 109 TRTSTFKRLSISTSKKNRPSTSAFDRLKMKNDQQQREMKSLKAKPFREENDDDKIHSCVP 168

Query: 65  SRMKRKFSVLINTEGSLKFEGSSLYPAALFLLQVRGFSVVRLLRCSSSKCEGSYVVRCCI 124
           SRMKRK SV INTEG+      ++    L L   RG S      C S +    +++ C  
Sbjct: 169 SRMKRKLSVDINTEGTASPPFQNVNQQTLLLYDWRGPSSSPFHMCCSREDHHLHLLTCVA 228

Query: 125 VPSSLKFDGSHAALL--------------EFLLPNSKVLTCFAA 155
                 F  SH   L              E+L  +  +LTC AA
Sbjct: 229 AERITIFTFSHVLQLRGSSSSPSHMCCSREYLHLHLYLLTCVAA 272

[Close]
BLAST of Lag0000774 vs. NCBI nr
Match: KAA0036008.1 (Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 5.5e-16
Identity = 54/81 (66.67%), Postives = 63/81 (77.78%), Query Frame = 0 

Query: 1   MSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLH 60
           MST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + K F E N D K+H
Sbjct: 105 MSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSFKAKPFHEENDDDKIH 164

Query: 61  SSIPSRMKRKFSVLINTEGSL 82
           S +PSRMKRK SV INTEGSL
Sbjct: 165 SRVPSRMKRKLSVDINTEGSL 185

[Close]
BLAST of Lag0000774 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 7.2e-16
Identity = 54/80 (67.50%), Postives = 63/80 (78.75%), Query Frame = 0 

Query: 2   STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHS 61
           ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS
Sbjct: 165 STYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHS 224

Query: 62  SIPSRMKRKFSVLINTEGSL 82
            +PSRMKRK SV INTEGSL
Sbjct: 225 RVPSRMKRKLSVDINTEGSL 244

[Close]
BLAST of Lag0000774 vs. NCBI nr
Match: KAA0050734.1 (gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 7.2e-16
Identity = 54/80 (67.50%), Postives = 63/80 (78.75%), Query Frame = 0 

Query: 2   STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHS 61
           ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS
Sbjct: 106 STYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENGDDKIHS 165

Query: 62  SIPSRMKRKFSVLINTEGSL 82
            +PSRMKRK SV INTEGSL
Sbjct: 166 RVPSRMKRKLSVDINTEGSL 185

[Close]
BLAST of Lag0000774 vs. NCBI nr
Match: TYK08944.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 1.6e-15
Identity = 53/80 (66.25%), Postives = 63/80 (78.75%), Query Frame = 0 

Query: 2   STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHS 61
           ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+H+
Sbjct: 582 STYARTSAFKRLSISTSKKHRPSTSTFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHN 641

Query: 62  SIPSRMKRKFSVLINTEGSL 82
            +PSRMKRK SV INTEGSL
Sbjct: 642 RVPSRMKRKLSVDINTEGSL 661

[Close]
BLAST of Lag0000774 vs. ExPASy TrEMBL
Match: A0A5A7TJM9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G00150 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.2e-16
Identity = 68/164 (41.46%), Postives = 88/164 (53.66%), Query Frame = 0 

Query: 5   TRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIP 64
           TR S F+RLS+STSKK+R STS FDRLK+ NDQ +R+M +L+ K F E N D K+HS +P
Sbjct: 109 TRTSTFKRLSISTSKKNRPSTSAFDRLKMKNDQQQREMKSLKAKPFREENDDDKIHSCVP 168

Query: 65  SRMKRKFSVLINTEGSLKFEGSSLYPAALFLLQVRGFSVVRLLRCSSSKCEGSYVVRCCI 124
           SRMKRK SV INTEG+      ++    L L   RG S      C S +    +++ C  
Sbjct: 169 SRMKRKLSVDINTEGTASPPFQNVNQQTLLLYDWRGPSSSPFHMCCSREDHHLHLLTCVA 228

Query: 125 VPSSLKFDGSHAALL--------------EFLLPNSKVLTCFAA 155
                 F  SH   L              E+L  +  +LTC AA
Sbjct: 229 AERITIFTFSHVLQLRGSSSSPSHMCCSREYLHLHLYLLTCVAA 272

[Close]
BLAST of Lag0000774 vs. ExPASy TrEMBL
Match: A0A5A7SZJ7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18735G00010 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.7e-16
Identity = 54/81 (66.67%), Postives = 63/81 (77.78%), Query Frame = 0 

Query: 1   MSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLH 60
           MST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + K F E N D K+H
Sbjct: 105 MSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSFKAKPFHEENDDDKIH 164

Query: 61  SSIPSRMKRKFSVLINTEGSL 82
           S +PSRMKRK SV INTEGSL
Sbjct: 165 SRVPSRMKRKLSVDINTEGSL 185

[Close]
BLAST of Lag0000774 vs. ExPASy TrEMBL
Match: A0A5D3BBF9 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00250 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.5e-16
Identity = 54/80 (67.50%), Postives = 63/80 (78.75%), Query Frame = 0 

Query: 2   STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHS 61
           ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS
Sbjct: 106 STYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENGDDKIHS 165

Query: 62  SIPSRMKRKFSVLINTEGSL 82
            +PSRMKRK SV INTEGSL
Sbjct: 166 RVPSRMKRKLSVDINTEGSL 185

[Close]
BLAST of Lag0000774 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.5e-16
Identity = 54/80 (67.50%), Postives = 63/80 (78.75%), Query Frame = 0 

Query: 2   STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHS 61
           ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS
Sbjct: 165 STYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHS 224

Query: 62  SIPSRMKRKFSVLINTEGSL 82
            +PSRMKRK SV INTEGSL
Sbjct: 225 RVPSRMKRKLSVDINTEGSL 244

[Close]
BLAST of Lag0000774 vs. ExPASy TrEMBL
Match: A0A5A7TGM1 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold333G00260 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.8e-16
Identity = 53/80 (66.25%), Postives = 63/80 (78.75%), Query Frame = 0 

Query: 2   STSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHS 61
           ST TR SAF+ LS+STSKK R STS FDRLK+ NDQ +R+M +L++K F E N D K+HS
Sbjct: 508 STCTRTSAFKSLSISTSKKDRPSTSAFDRLKMINDQQQREMKSLKVKPFHEENDDDKIHS 567

Query: 62  SIPSRMKRKFSVLINTEGSL 82
            +PSRMKRK SV INTEGSL
Sbjct: 568 RVPSRMKRKLSVDINTEGSL 587

The following BLAST results are available for this feature:
BLAST of Lag0000774 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0041559.12.5e-1641.46hypothetical protein E6C27_scaffold93G00150 [Cucumis melo var. makuwa][more]
KAA0036008.15.5e-1666.67Retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0044978.17.2e-1667.50retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0050734.17.2e-1667.50gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease pol... [more]
TYK08944.11.6e-1566.25retrotransposon gag protein [Cucumis melo var. makuwa][more]
BLAST of Lag0000774 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0000774 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TJM91.2e-1641.46Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SZJ72.7e-1666.67Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5D3BBF93.5e-1667.50Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7TQ063.5e-1667.50Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5A7TGM17.8e-1666.25Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
BLAST of Lag0000774 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 644..659
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 674..697
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 713..736
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 608..766
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 608..622

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000774.1Lag0000774.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0008233 peptidase activity