Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGAGCTCACCAACACTAAACAACAAAAAGGTGAACTCGTTGTTAACTACATAAATCGTTGGAGAGTCATGAGTCTAGATTGCAAAGATCGCCTCACTGAACTCTCTTCTGTTGAGATGTGCATTCAAGACATGCACTGGGAACTTCTCTACATCCTTCAAGGTATAAGGCCTCGCACCTTTGAAGAACTAGCCACTCGTGCCCACGATATTGAGCTAAGTATTTCTAGTCGAGAAAACCAAGACCTTCTACTCCCTAACTTAAAGACAGAAGGAAAGAACGTCGAAGTGACTATAGAAGAATCTATGGTTGTAAACACAATTCTTCTCGAGTCATCTTCAAAAGAAAAACGACAAGAAAATGGAACATGTCGCTTAACTTTAAAGGAAATATTGCAGAAAATCTATCATTTCCCTGATTGTGACATCCCTGACATGCTGGAACAACTACTGGAAGCACAACTGATAGAGCTTCCTAAGTGTAAACGATCGAAAGAGATGGAGAAAGTCAATGATCCCAAGTATTGCAAGTATCATCGAGTTGCTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATCCAGTGGAAAGATGCTTCGTCCTAAAGGATTTAATTCTAAAGCTAGCTAAGGAAGGAAAAATTGAGCTCAACCTTGATGAAGTAGCTCAACCAAATCTTGCTACAATCAAAGGAAAGAGCAAACATCAAAGAAAGAAGGATCCTAAGAAACTTCAACCCAAGAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCCTTCTCCAAAACTTTCCACAAAAAGGAAAAAAAAAAAACTTTGCAACTTCCTACTGCATCGACGTAAAAGAAGTTGACAATTCTGAGAAGGGTGAACAAAGGATTTCCGTCTTTGATCGCATCAAGCATTCAACTACTCATCCTTCGGTATTCCAAAGAATGAGTATGGTCGCGACAGAAGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAATGTCTCCACATCGAAGAAAATTCGATCTTCAATATCTGTCTTTGATCGCCTCAAAGTAACAGACGATCAACCTCAAAGAAAGATAGATAACTTAGAGGTGAAATTGTTCGATGAAGTAAACAGTGACAAGAAGCTTCAAAGTATTGTCCTGTCACGTATGAAAAGGAAGTTCTCTGTTCACATAAATACAAAAGGTTCCTTGAAGGTGAAGTCAAATCTCATTATCCTGACTAATCCTACAAGTGAAGGATCTGATCAAGACCATGATGAAGATAAGGGCTTTTAA
mRNA sequence
ATGTTCGAGCTCACCAACACTAAACAACAAAAAGGTGAACTCGTTGTTAACTACATAAATCGTTGGAGAGTCATGAGTCTAGATTGCAAAGATCGCCTCACTGAACTCTCTTCTGTTGAGATGTGCATTCAAGACATGCACTGGGAACTTCTCTACATCCTTCAAGGTATAAGGCCTCGCACCTTTGAAGAACTAGCCACTCGTGCCCACGATATTGAGCTAAGTATTTCTAGTCGAGAAAACCAAGACCTTCTACTCCCTAACTTAAAGACAGAAGGAAAGAACGTCGAAGTGACTATAGAAGAATCTATGGTTGTAAACACAATTCTTCTCGAGTCATCTTCAAAAGAAAAACGACAAGAAAATGGAACATGTCGCTTAACTTTAAAGGAAATATTGCAGAAAATCTATCATTTCCCTGATTGTGACATCCCTGACATGCTGGAACAACTACTGGAAGCACAACTGATAGAGCTTCCTAAGTTGGAAAGATGCTTCGTCCTAAAGGATTTAATTCTAAAGCTAGCTAAGGAAGGAAAAATTGAGCTCAACCTTGATGAAGTAGCTCAACCAAATCTTGCTACAATCAAAGGAAAGAGCAAACATCAAAGAAAGAAGGATCCTAAGAAACTTCAACCCAAGAGGAAGAGAAAAGTTGACAATTCTGAGAAGGGTGAACAAAGGATTTCCGTCTTTGATCGCATCAAGCATTCAACTACTCATCCTTCGGTATTCCAAAGAATGAGTATGGTCGCGACAGAAGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAATGTCTCCACATCGAAGAAAATTCGATCTTCAATATCTGTCTTTGATCGCCTCAAAGTAACAGACGATCAACCTCAAAGAAAGATAGATAACTTAGAGGTGAAATTGTTCGATGAAGTAAACAGTGACAAGAAGCTTCAAAGTATTGTCCTGTCACGTATGAAAAGGAAGTTCTCTGTTCACATAAATACAAAAGGTTCCTTGAAGGTGAAGTCAAATCTCATTATCCTGACTAATCCTACAAGTGAAGGATCTGATCAAGACCATGATGAAGATAAGGGCTTTTAA
Coding sequence (CDS)
ATGTTCGAGCTCACCAACACTAAACAACAAAAAGGTGAACTCGTTGTTAACTACATAAATCGTTGGAGAGTCATGAGTCTAGATTGCAAAGATCGCCTCACTGAACTCTCTTCTGTTGAGATGTGCATTCAAGACATGCACTGGGAACTTCTCTACATCCTTCAAGGTATAAGGCCTCGCACCTTTGAAGAACTAGCCACTCGTGCCCACGATATTGAGCTAAGTATTTCTAGTCGAGAAAACCAAGACCTTCTACTCCCTAACTTAAAGACAGAAGGAAAGAACGTCGAAGTGACTATAGAAGAATCTATGGTTGTAAACACAATTCTTCTCGAGTCATCTTCAAAAGAAAAACGACAAGAAAATGGAACATGTCGCTTAACTTTAAAGGAAATATTGCAGAAAATCTATCATTTCCCTGATTGTGACATCCCTGACATGCTGGAACAACTACTGGAAGCACAACTGATAGAGCTTCCTAAGTTGGAAAGATGCTTCGTCCTAAAGGATTTAATTCTAAAGCTAGCTAAGGAAGGAAAAATTGAGCTCAACCTTGATGAAGTAGCTCAACCAAATCTTGCTACAATCAAAGGAAAGAGCAAACATCAAAGAAAGAAGGATCCTAAGAAACTTCAACCCAAGAGGAAGAGAAAAGTTGACAATTCTGAGAAGGGTGAACAAAGGATTTCCGTCTTTGATCGCATCAAGCATTCAACTACTCATCCTTCGGTATTCCAAAGAATGAGTATGGTCGCGACAGAAGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAATGTCTCCACATCGAAGAAAATTCGATCTTCAATATCTGTCTTTGATCGCCTCAAAGTAACAGACGATCAACCTCAAAGAAAGATAGATAACTTAGAGGTGAAATTGTTCGATGAAGTAAACAGTGACAAGAAGCTTCAAAGTATTGTCCTGTCACGTATGAAAAGGAAGTTCTCTGTTCACATAAATACAAAAGGTTCCTTGAAGGTGAAGTCAAATCTCATTATCCTGACTAATCCTACAAGTGAAGGATCTGATCAAGACCATGATGAAGATAAGGGCTTTTAA
Protein sequence
MFELTNTKQQKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQDMHWELLYILQGIRPRTFEELATRAHDIELSISSRENQDLLLPNLKTEGKNVEVTIEESMVVNTILLESSSKEKRQENGTCRLTLKEILQKIYHFPDCDIPDMLEQLLEAQLIELPKLERCFVLKDLILKLAKEGKIELNLDEVAQPNLATIKGKSKHQRKKDPKKLQPKRKRKVDNSEKGEQRISVFDRIKHSTTHPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLNVSTSKKIRSSISVFDRLKVTDDQPQRKIDNLEVKLFDEVNSDKKLQSIVLSRMKRKFSVHINTKGSLKVKSNLIILTNPTSEGSDQDHDEDKGF
Homology
BLAST of Lag0000764 vs. NCBI nr
Match:
KAA0056121.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 335.9 bits (860), Expect = 4.4e-88
Identity = 219/445 (49.21%), Postives = 275/445 (61.80%), Query Frame = 0
Query: 1 MFELTNTKQQKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQDMHWELLYILQGIRPR 60
M ELTNT+QQKGELV++YINRWR +SLDCKDRLTELS+VEMC Q MHW LLYILQGI+PR
Sbjct: 288 MMELTNTRQQKGELVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPR 347
Query: 61 TFEELATRAHDIELSISSRENQDLLLPNLKTEGKNVEVT-------IEESMVVNTILLES 120
TFEELATRAHD+ELSI++R +D L+P +++ ++ T I+ESMVV+ L+S
Sbjct: 348 TFEELATRAHDMELSIANRGAKDFLIPKSRSDKNELDDTKKIANSVIKESMVVHATPLKS 407
Query: 121 SSKEK-----RQENG--TCRLTLKEILQKIYHFPDCDIPDMLEQLLEAQLIELPK----- 180
SK K R+ +G + TLKE +K+Y FPD D+ DMLEQLLE QLI+LP+
Sbjct: 408 FSKRKETKIERKHDGDEKRQSTLKERQEKVYPFPDSDVADMLEQLLENQLIQLPECKRPE 467
Query: 181 --------------------LERCFVLKDLILKLAKEGKIELNLDEVAQPNLATIKGKSK 240
+E+CFVLK+LILKLA+E KIEL++DEVAQ N A I+ S
Sbjct: 468 QAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLAREKKIELDIDEVAQTNHA-IEMTSN 527
Query: 241 HQRKKDPKKLQPKR----------------------------------------KRKVDN 300
+ KD LQ +R ++V+N
Sbjct: 528 PIKGKDEDFLQLRRSITLAEFLPRSFLEDDPEEILEVTACHAASIVEVDNNYGSSKEVNN 587
Query: 301 SEKGEQRISVFDRIKHSTTHPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLNVSTSKKI 360
S + QR SVFDRIK STT SVFQR+S+ EEENQC TR S +RL++ST KK
Sbjct: 588 SNEINQRTSVFDRIKPSTTRSSVFQRLSVATKEEENQCPTFIYTRTSTSKRLSISTLKKD 647
Query: 361 RSSISVFDRLKVTDDQPQRKIDNLEVKLFDEVNSDKKLQSIVLSRMKRKFSVHINTKGSL 367
R S S FDRLK+T+DQ QR++ + + K F E N D K+ S V SRMKRK V INT+GSL
Sbjct: 648 RPSTSSFDRLKMTNDQQQREMKSSKAKPFREENDDDKIHSCVPSRMKRKLFVDINTEGSL 707
BLAST of Lag0000764 vs. NCBI nr
Match:
KAA0065984.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28929.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 314.3 bits (804), Expect = 1.4e-81
Identity = 207/445 (46.52%), Postives = 259/445 (58.20%), Query Frame = 0
Query: 1 MFELTNTKQQKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQDMHWELLYILQGIRPR 60
M ELTNTKQ GE V+NYINRWR +SLDCKD+LTELS+VEMC Q MHWELLYILQGI+PR
Sbjct: 1 MMELTNTKQWNGEPVINYINRWRALSLDCKDKLTELSAVEMCTQGMHWELLYILQGIKPR 60
Query: 61 TFEELATRAHDIELSISSRENQDLLLPNLKTEGKNVEVT-------IEESMVVNTILLES 120
TFEELATRAHD+ELSI++R + L+ +++ + T + ESMVV L+S
Sbjct: 61 TFEELATRAHDMELSIANRGAKHFLVQRTRSDNNEINDTKKIANSVLNESMVVQETPLKS 120
Query: 121 SSKEK-------RQENGTCRLTLKEILQKIYHFPDCDIPDMLEQLLEAQLIEL------- 180
SK K ++ R TL+E +K+Y FPD D+ DMLEQL+E QLI+L
Sbjct: 121 FSKRKETKHERNHDDDEKRRPTLRERQKKVYPFPDSDVTDMLEQLIEKQLIQLLGCKRPG 180
Query: 181 ------------------PKLERCFVLKDLILKLAKEGKIELNLDEVAQPNLATIKGKSK 240
+E+CFVLK+LILKLA+E KI+L++DE IKG
Sbjct: 181 QAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLARENKIQLDIDE-------PIKG--- 240
Query: 241 HQRKKDPKKLQPKRK----------------------------------------RKVDN 300
KD LQP+R +VDN
Sbjct: 241 ----KDEDFLQPRRSITLAEFLPRSFFEDHPEEVIEVTACHTTSIVEVDNNYDSYEEVDN 300
Query: 301 SEKGEQRISVFDRIKHSTTHPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLNVSTSKKI 360
S + +QR SVFDRIK TT VFQR+SM EEENQC ST TR SAF+RL++STSKK
Sbjct: 301 SNEIKQRTSVFDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYTRTSAFKRLSISTSKKH 360
Query: 361 RSSISVFDRLKVTDDQPQRKIDNLEVKLFDEVNSDKKLQSIVLSRMKRKFSVHINTKGSL 367
R S S FDRLK+ +DQ QR++ +L+ K F E N D K+ S + S RK SV IN +GSL
Sbjct: 361 RPSTSAFDRLKMKNDQQQREMKSLKAKPFHEENDDDKIHSHIPS---RKLSVDINIEGSL 420
BLAST of Lag0000764 vs. NCBI nr
Match:
KAA0032650.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 304.7 bits (779), Expect = 1.1e-78
Identity = 216/492 (43.90%), Postives = 270/492 (54.88%), Query Frame = 0
Query: 1 MFELTNTKQQKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQDMHWELLYILQGIRPR 60
M ELTNT+QQKGELV++YINRWR +SLDCKDRLTELS+VEMC Q MHW LLYILQGI+PR
Sbjct: 62 MMELTNTRQQKGELVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPR 121
Query: 61 TFEELATRAHDIELSISSRENQDLLLPNLKTEGKNVEVT-------IEESMVVNTILLES 120
FEELAT AHD+ELSI++R +D L+P +++ ++ T I+ESMVV+ L+S
Sbjct: 122 MFEELATHAHDMELSIANRGAKDFLIPKSRSDKNELDDTKKIANSVIKESMVVHATPLKS 181
Query: 121 SSKEK-----RQENG--TCRLTLKEILQKIYHFPDCDIPDMLEQLLEAQLIELPK----- 180
SK K R+ +G + TLKE +K+Y F D D+ DMLEQLLE QLI+L +
Sbjct: 182 FSKRKETKIERKHDGDEKRQSTLKERQEKVYPFSDSDVADMLEQLLENQLIQLSECKRPE 241
Query: 181 --------------------LERCFVLKDLILKLAKEGKIELNLDEV------------- 240
+E+CFVLK+LILKLA+E KIEL+ D+
Sbjct: 242 QAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLAREKKIELDRDDKLPNKEAHGKDDGE 301
Query: 241 ----------AQPNLAT---------IKGKSKHQRK---------------KDPKKLQPK 300
QPN KG H++K KD LQ +
Sbjct: 302 GWITITRQKGRQPNSIQKESRFHQKYAKGSISHKKKGRRNKKMWNPKPIKGKDEDFLQLR 361
Query: 301 R----------------------------------------KRKVDNSEKGEQRISVFDR 360
R ++V+NS + QR SVFDR
Sbjct: 362 RSITLVEFLPKSFLEDYPEEIFEVTACHAASIVEVDNNYGSSKEVNNSNEINQRTSVFDR 421
Query: 361 IKHSTTHPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLNVSTSKKIRSSISVFDRLKVT 367
IK STT VFQR+SM EEENQC TR S F+RL++STSKK R S S FD LK+T
Sbjct: 422 IKPSTTQSLVFQRLSMATKEEENQCLTFIYTRTSTFKRLSISTSKKDRPSTSGFDCLKMT 481
BLAST of Lag0000764 vs. NCBI nr
Match:
KAA0032121.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 304.3 bits (778), Expect = 1.4e-78
Identity = 206/477 (43.19%), Postives = 267/477 (55.97%), Query Frame = 0
Query: 1 MFELTNTKQQKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQDMHWELLYILQGIRPR 60
M ELTNT Q+KGE V++YINRWR +SLDCKD+LTELS+VEMC Q MHWELLYILQGI+PR
Sbjct: 263 MMELTNT-QRKGEPVIDYINRWRALSLDCKDKLTELSAVEMCTQGMHWELLYILQGIKPR 322
Query: 61 TFEELATRAHDIELSISSRENQDLLLPNLKTEGKNVEVT-------IEESMVVNTILLES 120
TFEELATRAHD++LSI++R +D L+ +++ + T + ESM+V L+S
Sbjct: 323 TFEELATRAHDMKLSIANRGVKDFLVQRTRSDKNEINDTKKIANNVLNESMLVQETPLKS 382
Query: 121 SS-----KEKRQENG--TCRLTLKEILQKIYHFPDCDIPDMLEQLLEAQLIELPK----- 180
S K KR +G R TL+E +K+Y FPD D+ DMLEQL+E QLI+LP+
Sbjct: 383 FSKRKETKHKRNHDGDEKRRPTLRERQKKVYPFPDSDVADMLEQLIEKQLIQLPECKRPE 442
Query: 181 --------------------LERCFVLKDLILKLAKEGKIELNLDEVAQPNLATIK---- 240
+E+CFVLK+LI KLA+E KIEL++DEVAQ N +
Sbjct: 443 QVGKVDDPNYCKYHRVISHLVEKCFVLKELIRKLARENKIELDIDEVAQTNHVAVNMTSS 502
Query: 241 -------------------------------GKSKHQRKKDPKKLQPKR----------- 300
S Q K++P + + +
Sbjct: 503 VPLSILLYDQRKSLIQFGTFEPILVRFQQKTMTSNSQNKEEPSEDEGEEWIEFLPRSFLE 562
Query: 301 --------------------------KRKVDNSEKGEQRISVFDRIKHSTTHPSVFQRMS 360
++DNS + +QR SVFD IK TT SVFQR+S
Sbjct: 563 DHPEEILEVTACHTTSIVEVDNNYDSYEEMDNSNEIKQRTSVFDCIKPLTTRSSVFQRLS 622
Query: 361 MVATEEENQCSMSTSTRPSAFQRLNVSTSKKIRSSISVFDRLKVTDDQPQRKIDNLEVKL 367
M +EENQC T + SAF+RL++S SKK R S FDRLK+T+DQ QR++ L+ K
Sbjct: 623 MATKKEENQCPTFTYAQTSAFKRLSISISKKHRPSTYTFDRLKMTNDQQQREMKTLKAKP 682
BLAST of Lag0000764 vs. NCBI nr
Match:
TYK16519.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 301.6 bits (771), Expect = 9.3e-78
Identity = 215/540 (39.81%), Postives = 274/540 (50.74%), Query Frame = 0
Query: 1 MFELTNTKQQKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQDMHWELLYILQGIRPR 60
M ELTNTKQ+KGE V++YI RWR +SLDCKD+LTELS+V+MC Q MHWELLYILQGI+PR
Sbjct: 1 MMELTNTKQRKGEPVIDYITRWRALSLDCKDKLTELSAVKMCTQCMHWELLYILQGIKPR 60
Query: 61 TFEELATRAHDIELSISSRENQDLLLPNLKTEGKNVEVT-------IEESMVVNTILLES 120
TFEELATRAHD+ELSI++R +D L+ +++ + T + ESM V L+S
Sbjct: 61 TFEELATRAHDMELSIANRGAKDFLVQRTRSDKNEINDTKKIANNVLNESMFVQETPLKS 120
Query: 121 SS-----KEKRQENG--TCRLTLKEILQKIYHFPDCDIPDMLEQLLEAQLIELPK----- 180
S K KR +G R TL+E +K+Y FP+ D+ DMLEQL+E QLI+LP+
Sbjct: 121 FSKRKETKHKRNHDGDEKQRPTLRERQKKVYPFPNSDVADMLEQLIEKQLIQLPECKRLE 180
Query: 181 --------------------LERCFVLKDLILKLAKEGKIELNLDEVAQPNLATI----- 240
+E+CFVLK+LILKLA+E KIEL++DEVAQ N +
Sbjct: 181 QVGKVDDSNYCKYYRVISHPVEKCFVLKELILKLARENKIELDIDEVAQTNHVAVNMTSN 240
Query: 241 ------------------------------------------------------------ 300
Sbjct: 241 VPPSILLYDQRESLIQFGTFEPIHVQFQQKTMTSNSQNKEEPSEDEGEEWIGVAHKKERQ 300
Query: 301 ---------------KGKSKHQRK---------------KDPKKLQPKRK---------- 360
KG H++K KD LQP+R
Sbjct: 301 TSFVQTNSHFHQKNSKGNISHKKKGRRNKKMWKPKPIKGKDEHFLQPRRSITLAEFLPRI 360
Query: 361 ------------------------------RKVDNSEKGEQRISVFDRIKHSTTHPSVFQ 367
+VDNS + +QR SVFDRIK TT VFQ
Sbjct: 361 FLEDHPEEILEVTACHTTNIVEVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRSLVFQ 420
BLAST of Lag0000764 vs. ExPASy TrEMBL
Match:
A0A5A7URH1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17350G00010 PE=4 SV=1)
HSP 1 Score: 335.9 bits (860), Expect = 2.2e-88
Identity = 219/445 (49.21%), Postives = 275/445 (61.80%), Query Frame = 0
Query: 1 MFELTNTKQQKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQDMHWELLYILQGIRPR 60
M ELTNT+QQKGELV++YINRWR +SLDCKDRLTELS+VEMC Q MHW LLYILQGI+PR
Sbjct: 288 MMELTNTRQQKGELVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPR 347
Query: 61 TFEELATRAHDIELSISSRENQDLLLPNLKTEGKNVEVT-------IEESMVVNTILLES 120
TFEELATRAHD+ELSI++R +D L+P +++ ++ T I+ESMVV+ L+S
Sbjct: 348 TFEELATRAHDMELSIANRGAKDFLIPKSRSDKNELDDTKKIANSVIKESMVVHATPLKS 407
Query: 121 SSKEK-----RQENG--TCRLTLKEILQKIYHFPDCDIPDMLEQLLEAQLIELPK----- 180
SK K R+ +G + TLKE +K+Y FPD D+ DMLEQLLE QLI+LP+
Sbjct: 408 FSKRKETKIERKHDGDEKRQSTLKERQEKVYPFPDSDVADMLEQLLENQLIQLPECKRPE 467
Query: 181 --------------------LERCFVLKDLILKLAKEGKIELNLDEVAQPNLATIKGKSK 240
+E+CFVLK+LILKLA+E KIEL++DEVAQ N A I+ S
Sbjct: 468 QAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLAREKKIELDIDEVAQTNHA-IEMTSN 527
Query: 241 HQRKKDPKKLQPKR----------------------------------------KRKVDN 300
+ KD LQ +R ++V+N
Sbjct: 528 PIKGKDEDFLQLRRSITLAEFLPRSFLEDDPEEILEVTACHAASIVEVDNNYGSSKEVNN 587
Query: 301 SEKGEQRISVFDRIKHSTTHPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLNVSTSKKI 360
S + QR SVFDRIK STT SVFQR+S+ EEENQC TR S +RL++ST KK
Sbjct: 588 SNEINQRTSVFDRIKPSTTRSSVFQRLSVATKEEENQCPTFIYTRTSTSKRLSISTLKKD 647
Query: 361 RSSISVFDRLKVTDDQPQRKIDNLEVKLFDEVNSDKKLQSIVLSRMKRKFSVHINTKGSL 367
R S S FDRLK+T+DQ QR++ + + K F E N D K+ S V SRMKRK V INT+GSL
Sbjct: 648 RPSTSSFDRLKMTNDQQQREMKSSKAKPFREENDDDKIHSCVPSRMKRKLFVDINTEGSL 707
BLAST of Lag0000764 vs. ExPASy TrEMBL
Match:
A0A5A7VFA5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00130 PE=4 SV=1)
HSP 1 Score: 314.3 bits (804), Expect = 6.7e-82
Identity = 207/445 (46.52%), Postives = 259/445 (58.20%), Query Frame = 0
Query: 1 MFELTNTKQQKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQDMHWELLYILQGIRPR 60
M ELTNTKQ GE V+NYINRWR +SLDCKD+LTELS+VEMC Q MHWELLYILQGI+PR
Sbjct: 1 MMELTNTKQWNGEPVINYINRWRALSLDCKDKLTELSAVEMCTQGMHWELLYILQGIKPR 60
Query: 61 TFEELATRAHDIELSISSRENQDLLLPNLKTEGKNVEVT-------IEESMVVNTILLES 120
TFEELATRAHD+ELSI++R + L+ +++ + T + ESMVV L+S
Sbjct: 61 TFEELATRAHDMELSIANRGAKHFLVQRTRSDNNEINDTKKIANSVLNESMVVQETPLKS 120
Query: 121 SSKEK-------RQENGTCRLTLKEILQKIYHFPDCDIPDMLEQLLEAQLIEL------- 180
SK K ++ R TL+E +K+Y FPD D+ DMLEQL+E QLI+L
Sbjct: 121 FSKRKETKHERNHDDDEKRRPTLRERQKKVYPFPDSDVTDMLEQLIEKQLIQLLGCKRPG 180
Query: 181 ------------------PKLERCFVLKDLILKLAKEGKIELNLDEVAQPNLATIKGKSK 240
+E+CFVLK+LILKLA+E KI+L++DE IKG
Sbjct: 181 QAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLARENKIQLDIDE-------PIKG--- 240
Query: 241 HQRKKDPKKLQPKRK----------------------------------------RKVDN 300
KD LQP+R +VDN
Sbjct: 241 ----KDEDFLQPRRSITLAEFLPRSFFEDHPEEVIEVTACHTTSIVEVDNNYDSYEEVDN 300
Query: 301 SEKGEQRISVFDRIKHSTTHPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLNVSTSKKI 360
S + +QR SVFDRIK TT VFQR+SM EEENQC ST TR SAF+RL++STSKK
Sbjct: 301 SNEIKQRTSVFDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYTRTSAFKRLSISTSKKH 360
Query: 361 RSSISVFDRLKVTDDQPQRKIDNLEVKLFDEVNSDKKLQSIVLSRMKRKFSVHINTKGSL 367
R S S FDRLK+ +DQ QR++ +L+ K F E N D K+ S + S RK SV IN +GSL
Sbjct: 361 RPSTSAFDRLKMKNDQQQREMKSLKAKPFHEENDDDKIHSHIPS---RKLSVDINIEGSL 420
BLAST of Lag0000764 vs. ExPASy TrEMBL
Match:
A0A5A7SP56 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold184G00350 PE=4 SV=1)
HSP 1 Score: 304.7 bits (779), Expect = 5.3e-79
Identity = 216/492 (43.90%), Postives = 270/492 (54.88%), Query Frame = 0
Query: 1 MFELTNTKQQKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQDMHWELLYILQGIRPR 60
M ELTNT+QQKGELV++YINRWR +SLDCKDRLTELS+VEMC Q MHW LLYILQGI+PR
Sbjct: 62 MMELTNTRQQKGELVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPR 121
Query: 61 TFEELATRAHDIELSISSRENQDLLLPNLKTEGKNVEVT-------IEESMVVNTILLES 120
FEELAT AHD+ELSI++R +D L+P +++ ++ T I+ESMVV+ L+S
Sbjct: 122 MFEELATHAHDMELSIANRGAKDFLIPKSRSDKNELDDTKKIANSVIKESMVVHATPLKS 181
Query: 121 SSKEK-----RQENG--TCRLTLKEILQKIYHFPDCDIPDMLEQLLEAQLIELPK----- 180
SK K R+ +G + TLKE +K+Y F D D+ DMLEQLLE QLI+L +
Sbjct: 182 FSKRKETKIERKHDGDEKRQSTLKERQEKVYPFSDSDVADMLEQLLENQLIQLSECKRPE 241
Query: 181 --------------------LERCFVLKDLILKLAKEGKIELNLDEV------------- 240
+E+CFVLK+LILKLA+E KIEL+ D+
Sbjct: 242 QAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLAREKKIELDRDDKLPNKEAHGKDDGE 301
Query: 241 ----------AQPNLAT---------IKGKSKHQRK---------------KDPKKLQPK 300
QPN KG H++K KD LQ +
Sbjct: 302 GWITITRQKGRQPNSIQKESRFHQKYAKGSISHKKKGRRNKKMWNPKPIKGKDEDFLQLR 361
Query: 301 R----------------------------------------KRKVDNSEKGEQRISVFDR 360
R ++V+NS + QR SVFDR
Sbjct: 362 RSITLVEFLPKSFLEDYPEEIFEVTACHAASIVEVDNNYGSSKEVNNSNEINQRTSVFDR 421
Query: 361 IKHSTTHPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLNVSTSKKIRSSISVFDRLKVT 367
IK STT VFQR+SM EEENQC TR S F+RL++STSKK R S S FD LK+T
Sbjct: 422 IKPSTTQSLVFQRLSMATKEEENQCLTFIYTRTSTFKRLSISTSKKDRPSTSGFDCLKMT 481
BLAST of Lag0000764 vs. ExPASy TrEMBL
Match:
A0A5A7SRE2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold452G00210 PE=4 SV=1)
HSP 1 Score: 304.3 bits (778), Expect = 6.9e-79
Identity = 206/477 (43.19%), Postives = 267/477 (55.97%), Query Frame = 0
Query: 1 MFELTNTKQQKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQDMHWELLYILQGIRPR 60
M ELTNT Q+KGE V++YINRWR +SLDCKD+LTELS+VEMC Q MHWELLYILQGI+PR
Sbjct: 263 MMELTNT-QRKGEPVIDYINRWRALSLDCKDKLTELSAVEMCTQGMHWELLYILQGIKPR 322
Query: 61 TFEELATRAHDIELSISSRENQDLLLPNLKTEGKNVEVT-------IEESMVVNTILLES 120
TFEELATRAHD++LSI++R +D L+ +++ + T + ESM+V L+S
Sbjct: 323 TFEELATRAHDMKLSIANRGVKDFLVQRTRSDKNEINDTKKIANNVLNESMLVQETPLKS 382
Query: 121 SS-----KEKRQENG--TCRLTLKEILQKIYHFPDCDIPDMLEQLLEAQLIELPK----- 180
S K KR +G R TL+E +K+Y FPD D+ DMLEQL+E QLI+LP+
Sbjct: 383 FSKRKETKHKRNHDGDEKRRPTLRERQKKVYPFPDSDVADMLEQLIEKQLIQLPECKRPE 442
Query: 181 --------------------LERCFVLKDLILKLAKEGKIELNLDEVAQPNLATIK---- 240
+E+CFVLK+LI KLA+E KIEL++DEVAQ N +
Sbjct: 443 QVGKVDDPNYCKYHRVISHLVEKCFVLKELIRKLARENKIELDIDEVAQTNHVAVNMTSS 502
Query: 241 -------------------------------GKSKHQRKKDPKKLQPKR----------- 300
S Q K++P + + +
Sbjct: 503 VPLSILLYDQRKSLIQFGTFEPILVRFQQKTMTSNSQNKEEPSEDEGEEWIEFLPRSFLE 562
Query: 301 --------------------------KRKVDNSEKGEQRISVFDRIKHSTTHPSVFQRMS 360
++DNS + +QR SVFD IK TT SVFQR+S
Sbjct: 563 DHPEEILEVTACHTTSIVEVDNNYDSYEEMDNSNEIKQRTSVFDCIKPLTTRSSVFQRLS 622
Query: 361 MVATEEENQCSMSTSTRPSAFQRLNVSTSKKIRSSISVFDRLKVTDDQPQRKIDNLEVKL 367
M +EENQC T + SAF+RL++S SKK R S FDRLK+T+DQ QR++ L+ K
Sbjct: 623 MATKKEENQCPTFTYAQTSAFKRLSISISKKHRPSTYTFDRLKMTNDQQQREMKTLKAKP 682
BLAST of Lag0000764 vs. ExPASy TrEMBL
Match:
A0A5D3D209 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003310 PE=4 SV=1)
HSP 1 Score: 301.6 bits (771), Expect = 4.5e-78
Identity = 215/540 (39.81%), Postives = 274/540 (50.74%), Query Frame = 0
Query: 1 MFELTNTKQQKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQDMHWELLYILQGIRPR 60
M ELTNTKQ+KGE V++YI RWR +SLDCKD+LTELS+V+MC Q MHWELLYILQGI+PR
Sbjct: 1 MMELTNTKQRKGEPVIDYITRWRALSLDCKDKLTELSAVKMCTQCMHWELLYILQGIKPR 60
Query: 61 TFEELATRAHDIELSISSRENQDLLLPNLKTEGKNVEVT-------IEESMVVNTILLES 120
TFEELATRAHD+ELSI++R +D L+ +++ + T + ESM V L+S
Sbjct: 61 TFEELATRAHDMELSIANRGAKDFLVQRTRSDKNEINDTKKIANNVLNESMFVQETPLKS 120
Query: 121 SS-----KEKRQENG--TCRLTLKEILQKIYHFPDCDIPDMLEQLLEAQLIELPK----- 180
S K KR +G R TL+E +K+Y FP+ D+ DMLEQL+E QLI+LP+
Sbjct: 121 FSKRKETKHKRNHDGDEKQRPTLRERQKKVYPFPNSDVADMLEQLIEKQLIQLPECKRLE 180
Query: 181 --------------------LERCFVLKDLILKLAKEGKIELNLDEVAQPNLATI----- 240
+E+CFVLK+LILKLA+E KIEL++DEVAQ N +
Sbjct: 181 QVGKVDDSNYCKYYRVISHPVEKCFVLKELILKLARENKIELDIDEVAQTNHVAVNMTSN 240
Query: 241 ------------------------------------------------------------ 300
Sbjct: 241 VPPSILLYDQRESLIQFGTFEPIHVQFQQKTMTSNSQNKEEPSEDEGEEWIGVAHKKERQ 300
Query: 301 ---------------KGKSKHQRK---------------KDPKKLQPKRK---------- 360
KG H++K KD LQP+R
Sbjct: 301 TSFVQTNSHFHQKNSKGNISHKKKGRRNKKMWKPKPIKGKDEHFLQPRRSITLAEFLPRI 360
Query: 361 ------------------------------RKVDNSEKGEQRISVFDRIKHSTTHPSVFQ 367
+VDNS + +QR SVFDRIK TT VFQ
Sbjct: 361 FLEDHPEEILEVTACHTTNIVEVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRSLVFQ 420
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0056121.1 | 4.4e-88 | 49.21 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0065984.1 | 1.4e-81 | 46.52 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28929.1 ty3-gyp... | [more] |
KAA0032650.1 | 1.1e-78 | 43.90 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
KAA0032121.1 | 1.4e-78 | 43.19 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
TYK16519.1 | 9.3e-78 | 39.81 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7URH1 | 2.2e-88 | 49.21 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5A7VFA5 | 6.7e-82 | 46.52 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5A7SP56 | 5.3e-79 | 43.90 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
A0A5A7SRE2 | 6.9e-79 | 43.19 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5D3D209 | 4.5e-78 | 39.81 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
Match Name | E-value | Identity | Description | |