Lag0000764 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000764
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotransposon gag protein
Locationchr4: 15439304 .. 15440701 (+)
RNA-Seq ExpressionLag0000764
SyntenyLag0000764
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGAGCTCACCAACACTAAACAACAAAAAGGTGAACTCGTTGTTAACTACATAAATCGTTGGAGAGTCATGAGTCTAGATTGCAAAGATCGCCTCACTGAACTCTCTTCTGTTGAGATGTGCATTCAAGACATGCACTGGGAACTTCTCTACATCCTTCAAGGTATAAGGCCTCGCACCTTTGAAGAACTAGCCACTCGTGCCCACGATATTGAGCTAAGTATTTCTAGTCGAGAAAACCAAGACCTTCTACTCCCTAACTTAAAGACAGAAGGAAAGAACGTCGAAGTGACTATAGAAGAATCTATGGTTGTAAACACAATTCTTCTCGAGTCATCTTCAAAAGAAAAACGACAAGAAAATGGAACATGTCGCTTAACTTTAAAGGAAATATTGCAGAAAATCTATCATTTCCCTGATTGTGACATCCCTGACATGCTGGAACAACTACTGGAAGCACAACTGATAGAGCTTCCTAAGTGTAAACGATCGAAAGAGATGGAGAAAGTCAATGATCCCAAGTATTGCAAGTATCATCGAGTTGCTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATCCAGTGGAAAGATGCTTCGTCCTAAAGGATTTAATTCTAAAGCTAGCTAAGGAAGGAAAAATTGAGCTCAACCTTGATGAAGTAGCTCAACCAAATCTTGCTACAATCAAAGGAAAGAGCAAACATCAAAGAAAGAAGGATCCTAAGAAACTTCAACCCAAGAGGAAGAGAAGTAAAAAGTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCCTTCTCCAAAACTTTCCACAAAAAGGAAAAAAAAAAAACTTTGCAACTTCCTACTGCATCGACGTAAAAGAAGTTGACAATTCTGAGAAGGGTGAACAAAGGATTTCCGTCTTTGATCGCATCAAGCATTCAACTACTCATCCTTCGGTATTCCAAAGAATGAGTATGGTCGCGACAGAAGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAATGTCTCCACATCGAAGAAAATTCGATCTTCAATATCTGTCTTTGATCGCCTCAAAGTAACAGACGATCAACCTCAAAGAAAGATAGATAACTTAGAGGTGAAATTGTTCGATGAAGTAAACAGTGACAAGAAGCTTCAAAGTATTGTCCTGTCACGTATGAAAAGGAAGTTCTCTGTTCACATAAATACAAAAGGTTCCTTGAAGGTGAAGTCAAATCTCATTATCCTGACTAATCCTACAAGTGAAGGATCTGATCAAGACCATGATGAAGATAAGGGCTTTTAA

mRNA sequence

ATGTTCGAGCTCACCAACACTAAACAACAAAAAGGTGAACTCGTTGTTAACTACATAAATCGTTGGAGAGTCATGAGTCTAGATTGCAAAGATCGCCTCACTGAACTCTCTTCTGTTGAGATGTGCATTCAAGACATGCACTGGGAACTTCTCTACATCCTTCAAGGTATAAGGCCTCGCACCTTTGAAGAACTAGCCACTCGTGCCCACGATATTGAGCTAAGTATTTCTAGTCGAGAAAACCAAGACCTTCTACTCCCTAACTTAAAGACAGAAGGAAAGAACGTCGAAGTGACTATAGAAGAATCTATGGTTGTAAACACAATTCTTCTCGAGTCATCTTCAAAAGAAAAACGACAAGAAAATGGAACATGTCGCTTAACTTTAAAGGAAATATTGCAGAAAATCTATCATTTCCCTGATTGTGACATCCCTGACATGCTGGAACAACTACTGGAAGCACAACTGATAGAGCTTCCTAAGTTGGAAAGATGCTTCGTCCTAAAGGATTTAATTCTAAAGCTAGCTAAGGAAGGAAAAATTGAGCTCAACCTTGATGAAGTAGCTCAACCAAATCTTGCTACAATCAAAGGAAAGAGCAAACATCAAAGAAAGAAGGATCCTAAGAAACTTCAACCCAAGAGGAAGAGAAAAGTTGACAATTCTGAGAAGGGTGAACAAAGGATTTCCGTCTTTGATCGCATCAAGCATTCAACTACTCATCCTTCGGTATTCCAAAGAATGAGTATGGTCGCGACAGAAGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAATGTCTCCACATCGAAGAAAATTCGATCTTCAATATCTGTCTTTGATCGCCTCAAAGTAACAGACGATCAACCTCAAAGAAAGATAGATAACTTAGAGGTGAAATTGTTCGATGAAGTAAACAGTGACAAGAAGCTTCAAAGTATTGTCCTGTCACGTATGAAAAGGAAGTTCTCTGTTCACATAAATACAAAAGGTTCCTTGAAGGTGAAGTCAAATCTCATTATCCTGACTAATCCTACAAGTGAAGGATCTGATCAAGACCATGATGAAGATAAGGGCTTTTAA

Coding sequence (CDS)

ATGTTCGAGCTCACCAACACTAAACAACAAAAAGGTGAACTCGTTGTTAACTACATAAATCGTTGGAGAGTCATGAGTCTAGATTGCAAAGATCGCCTCACTGAACTCTCTTCTGTTGAGATGTGCATTCAAGACATGCACTGGGAACTTCTCTACATCCTTCAAGGTATAAGGCCTCGCACCTTTGAAGAACTAGCCACTCGTGCCCACGATATTGAGCTAAGTATTTCTAGTCGAGAAAACCAAGACCTTCTACTCCCTAACTTAAAGACAGAAGGAAAGAACGTCGAAGTGACTATAGAAGAATCTATGGTTGTAAACACAATTCTTCTCGAGTCATCTTCAAAAGAAAAACGACAAGAAAATGGAACATGTCGCTTAACTTTAAAGGAAATATTGCAGAAAATCTATCATTTCCCTGATTGTGACATCCCTGACATGCTGGAACAACTACTGGAAGCACAACTGATAGAGCTTCCTAAGTTGGAAAGATGCTTCGTCCTAAAGGATTTAATTCTAAAGCTAGCTAAGGAAGGAAAAATTGAGCTCAACCTTGATGAAGTAGCTCAACCAAATCTTGCTACAATCAAAGGAAAGAGCAAACATCAAAGAAAGAAGGATCCTAAGAAACTTCAACCCAAGAGGAAGAGAAAAGTTGACAATTCTGAGAAGGGTGAACAAAGGATTTCCGTCTTTGATCGCATCAAGCATTCAACTACTCATCCTTCGGTATTCCAAAGAATGAGTATGGTCGCGACAGAAGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAATGTCTCCACATCGAAGAAAATTCGATCTTCAATATCTGTCTTTGATCGCCTCAAAGTAACAGACGATCAACCTCAAAGAAAGATAGATAACTTAGAGGTGAAATTGTTCGATGAAGTAAACAGTGACAAGAAGCTTCAAAGTATTGTCCTGTCACGTATGAAAAGGAAGTTCTCTGTTCACATAAATACAAAAGGTTCCTTGAAGGTGAAGTCAAATCTCATTATCCTGACTAATCCTACAAGTGAAGGATCTGATCAAGACCATGATGAAGATAAGGGCTTTTAA

Protein sequence

MFELTNTKQQKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQDMHWELLYILQGIRPRTFEELATRAHDIELSISSRENQDLLLPNLKTEGKNVEVTIEESMVVNTILLESSSKEKRQENGTCRLTLKEILQKIYHFPDCDIPDMLEQLLEAQLIELPKLERCFVLKDLILKLAKEGKIELNLDEVAQPNLATIKGKSKHQRKKDPKKLQPKRKRKVDNSEKGEQRISVFDRIKHSTTHPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLNVSTSKKIRSSISVFDRLKVTDDQPQRKIDNLEVKLFDEVNSDKKLQSIVLSRMKRKFSVHINTKGSLKVKSNLIILTNPTSEGSDQDHDEDKGF
Homology
BLAST of Lag0000764 vs. NCBI nr
Match: KAA0056121.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 335.9 bits (860), Expect = 4.4e-88
Identity = 219/445 (49.21%), Postives = 275/445 (61.80%), Query Frame = 0

Query: 1   MFELTNTKQQKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQDMHWELLYILQGIRPR 60
           M ELTNT+QQKGELV++YINRWR +SLDCKDRLTELS+VEMC Q MHW LLYILQGI+PR
Sbjct: 288 MMELTNTRQQKGELVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPR 347

Query: 61  TFEELATRAHDIELSISSRENQDLLLPNLKTEGKNVEVT-------IEESMVVNTILLES 120
           TFEELATRAHD+ELSI++R  +D L+P  +++   ++ T       I+ESMVV+   L+S
Sbjct: 348 TFEELATRAHDMELSIANRGAKDFLIPKSRSDKNELDDTKKIANSVIKESMVVHATPLKS 407

Query: 121 SSKEK-----RQENG--TCRLTLKEILQKIYHFPDCDIPDMLEQLLEAQLIELPK----- 180
            SK K     R+ +G    + TLKE  +K+Y FPD D+ DMLEQLLE QLI+LP+     
Sbjct: 408 FSKRKETKIERKHDGDEKRQSTLKERQEKVYPFPDSDVADMLEQLLENQLIQLPECKRPE 467

Query: 181 --------------------LERCFVLKDLILKLAKEGKIELNLDEVAQPNLATIKGKSK 240
                               +E+CFVLK+LILKLA+E KIEL++DEVAQ N A I+  S 
Sbjct: 468 QAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLAREKKIELDIDEVAQTNHA-IEMTSN 527

Query: 241 HQRKKDPKKLQPKR----------------------------------------KRKVDN 300
             + KD   LQ +R                                         ++V+N
Sbjct: 528 PIKGKDEDFLQLRRSITLAEFLPRSFLEDDPEEILEVTACHAASIVEVDNNYGSSKEVNN 587

Query: 301 SEKGEQRISVFDRIKHSTTHPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLNVSTSKKI 360
           S +  QR SVFDRIK STT  SVFQR+S+   EEENQC     TR S  +RL++ST KK 
Sbjct: 588 SNEINQRTSVFDRIKPSTTRSSVFQRLSVATKEEENQCPTFIYTRTSTSKRLSISTLKKD 647

Query: 361 RSSISVFDRLKVTDDQPQRKIDNLEVKLFDEVNSDKKLQSIVLSRMKRKFSVHINTKGSL 367
           R S S FDRLK+T+DQ QR++ + + K F E N D K+ S V SRMKRK  V INT+GSL
Sbjct: 648 RPSTSSFDRLKMTNDQQQREMKSSKAKPFREENDDDKIHSCVPSRMKRKLFVDINTEGSL 707

BLAST of Lag0000764 vs. NCBI nr
Match: KAA0065984.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28929.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 314.3 bits (804), Expect = 1.4e-81
Identity = 207/445 (46.52%), Postives = 259/445 (58.20%), Query Frame = 0

Query: 1   MFELTNTKQQKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQDMHWELLYILQGIRPR 60
           M ELTNTKQ  GE V+NYINRWR +SLDCKD+LTELS+VEMC Q MHWELLYILQGI+PR
Sbjct: 1   MMELTNTKQWNGEPVINYINRWRALSLDCKDKLTELSAVEMCTQGMHWELLYILQGIKPR 60

Query: 61  TFEELATRAHDIELSISSRENQDLLLPNLKTEGKNVEVT-------IEESMVVNTILLES 120
           TFEELATRAHD+ELSI++R  +  L+   +++   +  T       + ESMVV    L+S
Sbjct: 61  TFEELATRAHDMELSIANRGAKHFLVQRTRSDNNEINDTKKIANSVLNESMVVQETPLKS 120

Query: 121 SSKEK-------RQENGTCRLTLKEILQKIYHFPDCDIPDMLEQLLEAQLIEL------- 180
            SK K         ++   R TL+E  +K+Y FPD D+ DMLEQL+E QLI+L       
Sbjct: 121 FSKRKETKHERNHDDDEKRRPTLRERQKKVYPFPDSDVTDMLEQLIEKQLIQLLGCKRPG 180

Query: 181 ------------------PKLERCFVLKDLILKLAKEGKIELNLDEVAQPNLATIKGKSK 240
                               +E+CFVLK+LILKLA+E KI+L++DE        IKG   
Sbjct: 181 QAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLARENKIQLDIDE-------PIKG--- 240

Query: 241 HQRKKDPKKLQPKRK----------------------------------------RKVDN 300
               KD   LQP+R                                          +VDN
Sbjct: 241 ----KDEDFLQPRRSITLAEFLPRSFFEDHPEEVIEVTACHTTSIVEVDNNYDSYEEVDN 300

Query: 301 SEKGEQRISVFDRIKHSTTHPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLNVSTSKKI 360
           S + +QR SVFDRIK  TT   VFQR+SM   EEENQC  ST TR SAF+RL++STSKK 
Sbjct: 301 SNEIKQRTSVFDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYTRTSAFKRLSISTSKKH 360

Query: 361 RSSISVFDRLKVTDDQPQRKIDNLEVKLFDEVNSDKKLQSIVLSRMKRKFSVHINTKGSL 367
           R S S FDRLK+ +DQ QR++ +L+ K F E N D K+ S + S   RK SV IN +GSL
Sbjct: 361 RPSTSAFDRLKMKNDQQQREMKSLKAKPFHEENDDDKIHSHIPS---RKLSVDINIEGSL 420

BLAST of Lag0000764 vs. NCBI nr
Match: KAA0032650.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 304.7 bits (779), Expect = 1.1e-78
Identity = 216/492 (43.90%), Postives = 270/492 (54.88%), Query Frame = 0

Query: 1   MFELTNTKQQKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQDMHWELLYILQGIRPR 60
           M ELTNT+QQKGELV++YINRWR +SLDCKDRLTELS+VEMC Q MHW LLYILQGI+PR
Sbjct: 62  MMELTNTRQQKGELVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPR 121

Query: 61  TFEELATRAHDIELSISSRENQDLLLPNLKTEGKNVEVT-------IEESMVVNTILLES 120
            FEELAT AHD+ELSI++R  +D L+P  +++   ++ T       I+ESMVV+   L+S
Sbjct: 122 MFEELATHAHDMELSIANRGAKDFLIPKSRSDKNELDDTKKIANSVIKESMVVHATPLKS 181

Query: 121 SSKEK-----RQENG--TCRLTLKEILQKIYHFPDCDIPDMLEQLLEAQLIELPK----- 180
            SK K     R+ +G    + TLKE  +K+Y F D D+ DMLEQLLE QLI+L +     
Sbjct: 182 FSKRKETKIERKHDGDEKRQSTLKERQEKVYPFSDSDVADMLEQLLENQLIQLSECKRPE 241

Query: 181 --------------------LERCFVLKDLILKLAKEGKIELNLDEV------------- 240
                               +E+CFVLK+LILKLA+E KIEL+ D+              
Sbjct: 242 QAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLAREKKIELDRDDKLPNKEAHGKDDGE 301

Query: 241 ----------AQPNLAT---------IKGKSKHQRK---------------KDPKKLQPK 300
                      QPN             KG   H++K               KD   LQ +
Sbjct: 302 GWITITRQKGRQPNSIQKESRFHQKYAKGSISHKKKGRRNKKMWNPKPIKGKDEDFLQLR 361

Query: 301 R----------------------------------------KRKVDNSEKGEQRISVFDR 360
           R                                         ++V+NS +  QR SVFDR
Sbjct: 362 RSITLVEFLPKSFLEDYPEEIFEVTACHAASIVEVDNNYGSSKEVNNSNEINQRTSVFDR 421

Query: 361 IKHSTTHPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLNVSTSKKIRSSISVFDRLKVT 367
           IK STT   VFQR+SM   EEENQC     TR S F+RL++STSKK R S S FD LK+T
Sbjct: 422 IKPSTTQSLVFQRLSMATKEEENQCLTFIYTRTSTFKRLSISTSKKDRPSTSGFDCLKMT 481

BLAST of Lag0000764 vs. NCBI nr
Match: KAA0032121.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 304.3 bits (778), Expect = 1.4e-78
Identity = 206/477 (43.19%), Postives = 267/477 (55.97%), Query Frame = 0

Query: 1   MFELTNTKQQKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQDMHWELLYILQGIRPR 60
           M ELTNT Q+KGE V++YINRWR +SLDCKD+LTELS+VEMC Q MHWELLYILQGI+PR
Sbjct: 263 MMELTNT-QRKGEPVIDYINRWRALSLDCKDKLTELSAVEMCTQGMHWELLYILQGIKPR 322

Query: 61  TFEELATRAHDIELSISSRENQDLLLPNLKTEGKNVEVT-------IEESMVVNTILLES 120
           TFEELATRAHD++LSI++R  +D L+   +++   +  T       + ESM+V    L+S
Sbjct: 323 TFEELATRAHDMKLSIANRGVKDFLVQRTRSDKNEINDTKKIANNVLNESMLVQETPLKS 382

Query: 121 SS-----KEKRQENG--TCRLTLKEILQKIYHFPDCDIPDMLEQLLEAQLIELPK----- 180
            S     K KR  +G    R TL+E  +K+Y FPD D+ DMLEQL+E QLI+LP+     
Sbjct: 383 FSKRKETKHKRNHDGDEKRRPTLRERQKKVYPFPDSDVADMLEQLIEKQLIQLPECKRPE 442

Query: 181 --------------------LERCFVLKDLILKLAKEGKIELNLDEVAQPNLATIK---- 240
                               +E+CFVLK+LI KLA+E KIEL++DEVAQ N   +     
Sbjct: 443 QVGKVDDPNYCKYHRVISHLVEKCFVLKELIRKLARENKIELDIDEVAQTNHVAVNMTSS 502

Query: 241 -------------------------------GKSKHQRKKDPKKLQPKR----------- 300
                                            S  Q K++P + + +            
Sbjct: 503 VPLSILLYDQRKSLIQFGTFEPILVRFQQKTMTSNSQNKEEPSEDEGEEWIEFLPRSFLE 562

Query: 301 --------------------------KRKVDNSEKGEQRISVFDRIKHSTTHPSVFQRMS 360
                                       ++DNS + +QR SVFD IK  TT  SVFQR+S
Sbjct: 563 DHPEEILEVTACHTTSIVEVDNNYDSYEEMDNSNEIKQRTSVFDCIKPLTTRSSVFQRLS 622

Query: 361 MVATEEENQCSMSTSTRPSAFQRLNVSTSKKIRSSISVFDRLKVTDDQPQRKIDNLEVKL 367
           M   +EENQC   T  + SAF+RL++S SKK R S   FDRLK+T+DQ QR++  L+ K 
Sbjct: 623 MATKKEENQCPTFTYAQTSAFKRLSISISKKHRPSTYTFDRLKMTNDQQQREMKTLKAKP 682

BLAST of Lag0000764 vs. NCBI nr
Match: TYK16519.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 301.6 bits (771), Expect = 9.3e-78
Identity = 215/540 (39.81%), Postives = 274/540 (50.74%), Query Frame = 0

Query: 1   MFELTNTKQQKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQDMHWELLYILQGIRPR 60
           M ELTNTKQ+KGE V++YI RWR +SLDCKD+LTELS+V+MC Q MHWELLYILQGI+PR
Sbjct: 1   MMELTNTKQRKGEPVIDYITRWRALSLDCKDKLTELSAVKMCTQCMHWELLYILQGIKPR 60

Query: 61  TFEELATRAHDIELSISSRENQDLLLPNLKTEGKNVEVT-------IEESMVVNTILLES 120
           TFEELATRAHD+ELSI++R  +D L+   +++   +  T       + ESM V    L+S
Sbjct: 61  TFEELATRAHDMELSIANRGAKDFLVQRTRSDKNEINDTKKIANNVLNESMFVQETPLKS 120

Query: 121 SS-----KEKRQENG--TCRLTLKEILQKIYHFPDCDIPDMLEQLLEAQLIELPK----- 180
            S     K KR  +G    R TL+E  +K+Y FP+ D+ DMLEQL+E QLI+LP+     
Sbjct: 121 FSKRKETKHKRNHDGDEKQRPTLRERQKKVYPFPNSDVADMLEQLIEKQLIQLPECKRLE 180

Query: 181 --------------------LERCFVLKDLILKLAKEGKIELNLDEVAQPNLATI----- 240
                               +E+CFVLK+LILKLA+E KIEL++DEVAQ N   +     
Sbjct: 181 QVGKVDDSNYCKYYRVISHPVEKCFVLKELILKLARENKIELDIDEVAQTNHVAVNMTSN 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 VPPSILLYDQRESLIQFGTFEPIHVQFQQKTMTSNSQNKEEPSEDEGEEWIGVAHKKERQ 300

Query: 301 ---------------KGKSKHQRK---------------KDPKKLQPKRK---------- 360
                          KG   H++K               KD   LQP+R           
Sbjct: 301 TSFVQTNSHFHQKNSKGNISHKKKGRRNKKMWKPKPIKGKDEHFLQPRRSITLAEFLPRI 360

Query: 361 ------------------------------RKVDNSEKGEQRISVFDRIKHSTTHPSVFQ 367
                                          +VDNS + +QR SVFDRIK  TT   VFQ
Sbjct: 361 FLEDHPEEILEVTACHTTNIVEVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRSLVFQ 420

BLAST of Lag0000764 vs. ExPASy TrEMBL
Match: A0A5A7URH1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17350G00010 PE=4 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 2.2e-88
Identity = 219/445 (49.21%), Postives = 275/445 (61.80%), Query Frame = 0

Query: 1   MFELTNTKQQKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQDMHWELLYILQGIRPR 60
           M ELTNT+QQKGELV++YINRWR +SLDCKDRLTELS+VEMC Q MHW LLYILQGI+PR
Sbjct: 288 MMELTNTRQQKGELVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPR 347

Query: 61  TFEELATRAHDIELSISSRENQDLLLPNLKTEGKNVEVT-------IEESMVVNTILLES 120
           TFEELATRAHD+ELSI++R  +D L+P  +++   ++ T       I+ESMVV+   L+S
Sbjct: 348 TFEELATRAHDMELSIANRGAKDFLIPKSRSDKNELDDTKKIANSVIKESMVVHATPLKS 407

Query: 121 SSKEK-----RQENG--TCRLTLKEILQKIYHFPDCDIPDMLEQLLEAQLIELPK----- 180
            SK K     R+ +G    + TLKE  +K+Y FPD D+ DMLEQLLE QLI+LP+     
Sbjct: 408 FSKRKETKIERKHDGDEKRQSTLKERQEKVYPFPDSDVADMLEQLLENQLIQLPECKRPE 467

Query: 181 --------------------LERCFVLKDLILKLAKEGKIELNLDEVAQPNLATIKGKSK 240
                               +E+CFVLK+LILKLA+E KIEL++DEVAQ N A I+  S 
Sbjct: 468 QAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLAREKKIELDIDEVAQTNHA-IEMTSN 527

Query: 241 HQRKKDPKKLQPKR----------------------------------------KRKVDN 300
             + KD   LQ +R                                         ++V+N
Sbjct: 528 PIKGKDEDFLQLRRSITLAEFLPRSFLEDDPEEILEVTACHAASIVEVDNNYGSSKEVNN 587

Query: 301 SEKGEQRISVFDRIKHSTTHPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLNVSTSKKI 360
           S +  QR SVFDRIK STT  SVFQR+S+   EEENQC     TR S  +RL++ST KK 
Sbjct: 588 SNEINQRTSVFDRIKPSTTRSSVFQRLSVATKEEENQCPTFIYTRTSTSKRLSISTLKKD 647

Query: 361 RSSISVFDRLKVTDDQPQRKIDNLEVKLFDEVNSDKKLQSIVLSRMKRKFSVHINTKGSL 367
           R S S FDRLK+T+DQ QR++ + + K F E N D K+ S V SRMKRK  V INT+GSL
Sbjct: 648 RPSTSSFDRLKMTNDQQQREMKSSKAKPFREENDDDKIHSCVPSRMKRKLFVDINTEGSL 707

BLAST of Lag0000764 vs. ExPASy TrEMBL
Match: A0A5A7VFA5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00130 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 6.7e-82
Identity = 207/445 (46.52%), Postives = 259/445 (58.20%), Query Frame = 0

Query: 1   MFELTNTKQQKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQDMHWELLYILQGIRPR 60
           M ELTNTKQ  GE V+NYINRWR +SLDCKD+LTELS+VEMC Q MHWELLYILQGI+PR
Sbjct: 1   MMELTNTKQWNGEPVINYINRWRALSLDCKDKLTELSAVEMCTQGMHWELLYILQGIKPR 60

Query: 61  TFEELATRAHDIELSISSRENQDLLLPNLKTEGKNVEVT-------IEESMVVNTILLES 120
           TFEELATRAHD+ELSI++R  +  L+   +++   +  T       + ESMVV    L+S
Sbjct: 61  TFEELATRAHDMELSIANRGAKHFLVQRTRSDNNEINDTKKIANSVLNESMVVQETPLKS 120

Query: 121 SSKEK-------RQENGTCRLTLKEILQKIYHFPDCDIPDMLEQLLEAQLIEL------- 180
            SK K         ++   R TL+E  +K+Y FPD D+ DMLEQL+E QLI+L       
Sbjct: 121 FSKRKETKHERNHDDDEKRRPTLRERQKKVYPFPDSDVTDMLEQLIEKQLIQLLGCKRPG 180

Query: 181 ------------------PKLERCFVLKDLILKLAKEGKIELNLDEVAQPNLATIKGKSK 240
                               +E+CFVLK+LILKLA+E KI+L++DE        IKG   
Sbjct: 181 QAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLARENKIQLDIDE-------PIKG--- 240

Query: 241 HQRKKDPKKLQPKRK----------------------------------------RKVDN 300
               KD   LQP+R                                          +VDN
Sbjct: 241 ----KDEDFLQPRRSITLAEFLPRSFFEDHPEEVIEVTACHTTSIVEVDNNYDSYEEVDN 300

Query: 301 SEKGEQRISVFDRIKHSTTHPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLNVSTSKKI 360
           S + +QR SVFDRIK  TT   VFQR+SM   EEENQC  ST TR SAF+RL++STSKK 
Sbjct: 301 SNEIKQRTSVFDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYTRTSAFKRLSISTSKKH 360

Query: 361 RSSISVFDRLKVTDDQPQRKIDNLEVKLFDEVNSDKKLQSIVLSRMKRKFSVHINTKGSL 367
           R S S FDRLK+ +DQ QR++ +L+ K F E N D K+ S + S   RK SV IN +GSL
Sbjct: 361 RPSTSAFDRLKMKNDQQQREMKSLKAKPFHEENDDDKIHSHIPS---RKLSVDINIEGSL 420

BLAST of Lag0000764 vs. ExPASy TrEMBL
Match: A0A5A7SP56 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold184G00350 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 5.3e-79
Identity = 216/492 (43.90%), Postives = 270/492 (54.88%), Query Frame = 0

Query: 1   MFELTNTKQQKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQDMHWELLYILQGIRPR 60
           M ELTNT+QQKGELV++YINRWR +SLDCKDRLTELS+VEMC Q MHW LLYILQGI+PR
Sbjct: 62  MMELTNTRQQKGELVIDYINRWRALSLDCKDRLTELSAVEMCTQGMHWGLLYILQGIKPR 121

Query: 61  TFEELATRAHDIELSISSRENQDLLLPNLKTEGKNVEVT-------IEESMVVNTILLES 120
            FEELAT AHD+ELSI++R  +D L+P  +++   ++ T       I+ESMVV+   L+S
Sbjct: 122 MFEELATHAHDMELSIANRGAKDFLIPKSRSDKNELDDTKKIANSVIKESMVVHATPLKS 181

Query: 121 SSKEK-----RQENG--TCRLTLKEILQKIYHFPDCDIPDMLEQLLEAQLIELPK----- 180
            SK K     R+ +G    + TLKE  +K+Y F D D+ DMLEQLLE QLI+L +     
Sbjct: 182 FSKRKETKIERKHDGDEKRQSTLKERQEKVYPFSDSDVADMLEQLLENQLIQLSECKRPE 241

Query: 181 --------------------LERCFVLKDLILKLAKEGKIELNLDEV------------- 240
                               +E+CFVLK+LILKLA+E KIEL+ D+              
Sbjct: 242 QAGKVDDPNYCKYHRVISHPVEKCFVLKELILKLAREKKIELDRDDKLPNKEAHGKDDGE 301

Query: 241 ----------AQPNLAT---------IKGKSKHQRK---------------KDPKKLQPK 300
                      QPN             KG   H++K               KD   LQ +
Sbjct: 302 GWITITRQKGRQPNSIQKESRFHQKYAKGSISHKKKGRRNKKMWNPKPIKGKDEDFLQLR 361

Query: 301 R----------------------------------------KRKVDNSEKGEQRISVFDR 360
           R                                         ++V+NS +  QR SVFDR
Sbjct: 362 RSITLVEFLPKSFLEDYPEEIFEVTACHAASIVEVDNNYGSSKEVNNSNEINQRTSVFDR 421

Query: 361 IKHSTTHPSVFQRMSMVATEEENQCSMSTSTRPSAFQRLNVSTSKKIRSSISVFDRLKVT 367
           IK STT   VFQR+SM   EEENQC     TR S F+RL++STSKK R S S FD LK+T
Sbjct: 422 IKPSTTQSLVFQRLSMATKEEENQCLTFIYTRTSTFKRLSISTSKKDRPSTSGFDCLKMT 481

BLAST of Lag0000764 vs. ExPASy TrEMBL
Match: A0A5A7SRE2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold452G00210 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 6.9e-79
Identity = 206/477 (43.19%), Postives = 267/477 (55.97%), Query Frame = 0

Query: 1   MFELTNTKQQKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQDMHWELLYILQGIRPR 60
           M ELTNT Q+KGE V++YINRWR +SLDCKD+LTELS+VEMC Q MHWELLYILQGI+PR
Sbjct: 263 MMELTNT-QRKGEPVIDYINRWRALSLDCKDKLTELSAVEMCTQGMHWELLYILQGIKPR 322

Query: 61  TFEELATRAHDIELSISSRENQDLLLPNLKTEGKNVEVT-------IEESMVVNTILLES 120
           TFEELATRAHD++LSI++R  +D L+   +++   +  T       + ESM+V    L+S
Sbjct: 323 TFEELATRAHDMKLSIANRGVKDFLVQRTRSDKNEINDTKKIANNVLNESMLVQETPLKS 382

Query: 121 SS-----KEKRQENG--TCRLTLKEILQKIYHFPDCDIPDMLEQLLEAQLIELPK----- 180
            S     K KR  +G    R TL+E  +K+Y FPD D+ DMLEQL+E QLI+LP+     
Sbjct: 383 FSKRKETKHKRNHDGDEKRRPTLRERQKKVYPFPDSDVADMLEQLIEKQLIQLPECKRPE 442

Query: 181 --------------------LERCFVLKDLILKLAKEGKIELNLDEVAQPNLATIK---- 240
                               +E+CFVLK+LI KLA+E KIEL++DEVAQ N   +     
Sbjct: 443 QVGKVDDPNYCKYHRVISHLVEKCFVLKELIRKLARENKIELDIDEVAQTNHVAVNMTSS 502

Query: 241 -------------------------------GKSKHQRKKDPKKLQPKR----------- 300
                                            S  Q K++P + + +            
Sbjct: 503 VPLSILLYDQRKSLIQFGTFEPILVRFQQKTMTSNSQNKEEPSEDEGEEWIEFLPRSFLE 562

Query: 301 --------------------------KRKVDNSEKGEQRISVFDRIKHSTTHPSVFQRMS 360
                                       ++DNS + +QR SVFD IK  TT  SVFQR+S
Sbjct: 563 DHPEEILEVTACHTTSIVEVDNNYDSYEEMDNSNEIKQRTSVFDCIKPLTTRSSVFQRLS 622

Query: 361 MVATEEENQCSMSTSTRPSAFQRLNVSTSKKIRSSISVFDRLKVTDDQPQRKIDNLEVKL 367
           M   +EENQC   T  + SAF+RL++S SKK R S   FDRLK+T+DQ QR++  L+ K 
Sbjct: 623 MATKKEENQCPTFTYAQTSAFKRLSISISKKHRPSTYTFDRLKMTNDQQQREMKTLKAKP 682

BLAST of Lag0000764 vs. ExPASy TrEMBL
Match: A0A5D3D209 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003310 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 4.5e-78
Identity = 215/540 (39.81%), Postives = 274/540 (50.74%), Query Frame = 0

Query: 1   MFELTNTKQQKGELVVNYINRWRVMSLDCKDRLTELSSVEMCIQDMHWELLYILQGIRPR 60
           M ELTNTKQ+KGE V++YI RWR +SLDCKD+LTELS+V+MC Q MHWELLYILQGI+PR
Sbjct: 1   MMELTNTKQRKGEPVIDYITRWRALSLDCKDKLTELSAVKMCTQCMHWELLYILQGIKPR 60

Query: 61  TFEELATRAHDIELSISSRENQDLLLPNLKTEGKNVEVT-------IEESMVVNTILLES 120
           TFEELATRAHD+ELSI++R  +D L+   +++   +  T       + ESM V    L+S
Sbjct: 61  TFEELATRAHDMELSIANRGAKDFLVQRTRSDKNEINDTKKIANNVLNESMFVQETPLKS 120

Query: 121 SS-----KEKRQENG--TCRLTLKEILQKIYHFPDCDIPDMLEQLLEAQLIELPK----- 180
            S     K KR  +G    R TL+E  +K+Y FP+ D+ DMLEQL+E QLI+LP+     
Sbjct: 121 FSKRKETKHKRNHDGDEKQRPTLRERQKKVYPFPNSDVADMLEQLIEKQLIQLPECKRLE 180

Query: 181 --------------------LERCFVLKDLILKLAKEGKIELNLDEVAQPNLATI----- 240
                               +E+CFVLK+LILKLA+E KIEL++DEVAQ N   +     
Sbjct: 181 QVGKVDDSNYCKYYRVISHPVEKCFVLKELILKLARENKIELDIDEVAQTNHVAVNMTSN 240

Query: 241 ------------------------------------------------------------ 300
                                                                       
Sbjct: 241 VPPSILLYDQRESLIQFGTFEPIHVQFQQKTMTSNSQNKEEPSEDEGEEWIGVAHKKERQ 300

Query: 301 ---------------KGKSKHQRK---------------KDPKKLQPKRK---------- 360
                          KG   H++K               KD   LQP+R           
Sbjct: 301 TSFVQTNSHFHQKNSKGNISHKKKGRRNKKMWKPKPIKGKDEHFLQPRRSITLAEFLPRI 360

Query: 361 ------------------------------RKVDNSEKGEQRISVFDRIKHSTTHPSVFQ 367
                                          +VDNS + +QR SVFDRIK  TT   VFQ
Sbjct: 361 FLEDHPEEILEVTACHTTNIVEVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRSLVFQ 420

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0056121.14.4e-8849.21ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0065984.11.4e-8146.52ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28929.1 ty3-gyp... [more]
KAA0032650.11.1e-7843.90retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0032121.11.4e-7843.19ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
TYK16519.19.3e-7839.81retrotransposon gag protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7URH12.2e-8849.21Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7VFA56.7e-8246.52Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7SP565.3e-7943.90Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5A7SRE26.9e-7943.19Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3D2094.5e-7839.81Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 198..213
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 194..225

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000764.1Lag0000764.1mRNA