Lag0000763 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000763
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTy3-gypsy retrotransposon protein
Locationchr4: 15438482 .. 15438940 (+)
RNA-Seq ExpressionLag0000763
SyntenyLag0000763
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATTCAAGACTTCTTCAATGGGCACTGTCAGGAACAAGTCTTACATGGGTTCTACTGCCCATTGTTGCTTCAATGAACTGAGGTTGCAAGAAGATAAAGCTTCTATCATTGCAAGCGAAGAAACAACATTGCAGGGGGCATGTACCAATGACAAGTCTCTTATTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTTATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCACCTAAAGAATCAGATTGAAAACCAGCATATCACTGAATCAAGTCAAATCCAAGTCATAAAAAATAACGACAAAGGAAAGACTATAGTGCAAGATCATCAGCCACAGTGTTCTACTTCGAACGCTTCACTATCCAGTCAATAG

mRNA sequence

ATGTCATTCAAGACTTCTTCAATGGGCACTGTCAGGAACAAGTCTTACATGGGTTCTACTGCCCATTGTTGCTTCAATGAACTGAGGTTGCAAGAAGATAAAGCTTCTATCATTGCAAGCGAAGAAACAACATTGCAGGGGGCATGTACCAATGACAAGTCTCTTATTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTTATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCACCTAAAGAATCAGATTGAAAACCAGCATATCACTGAATCAAGTCAAATCCAAGTCATAAAAAATAACGACAAAGGAAAGACTATAGTGCAAGATCATCAGCCACAGTGTTCTACTTCGAACGCTTCACTATCCAGTCAATAG

Coding sequence (CDS)

ATGTCATTCAAGACTTCTTCAATGGGCACTGTCAGGAACAAGTCTTACATGGGTTCTACTGCCCATTGTTGCTTCAATGAACTGAGGTTGCAAGAAGATAAAGCTTCTATCATTGCAAGCGAAGAAACAACATTGCAGGGGGCATGTACCAATGACAAGTCTCTTATTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTTATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCACCTAAAGAATCAGATTGAAAACCAGCATATCACTGAATCAAGTCAAATCCAAGTCATAAAAAATAACGACAAAGGAAAGACTATAGTGCAAGATCATCAGCCACAGTGTTCTACTTCGAACGCTTCACTATCCAGTCAATAG

Protein sequence

MSFKTSSMGTVRNKSYMGSTAHCCFNELRLQEDKASIIASEETTLQGACTNDKSLIKYNPLFEPDSDVVTVMMTETRTMEERMAEMQEHINTLMKAIEEKDSQIEHLKNQIENQHITESSQIQVIKNNDKGKTIVQDHQPQCSTSNASLSSQ
Homology
BLAST of Lag0000763 vs. NCBI nr
Match: KAA0050337.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03551.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 1.6e-12
Identity = 50/102 (49.02%), Postives = 72/102 (70.59%), Query Frame = 0

Query: 57  KYNPLFE------PDSDVVTVMMTETRTMEERMAEMQEHINTLMKAIEEKDSQIEHLKNQ 116
           +YN L E      P  ++++VM+T+  T E+RMAE+++++N LMKA++E+D +I  LKN 
Sbjct: 64  EYNSLPERSNEEVPQPNIMSVMVTDVDTSEDRMAELEKNVNMLMKAVKERDFEIALLKNH 123

Query: 117 IENQHITESSQIQVIKNNDKGKTIVQDHQPQCSTSNASLSSQ 153
           IE++   ESS I  IKN +KGK I+Q+ QPQ STS ASLS Q
Sbjct: 124 IESRDAAESSHIHTIKNANKGKAIMQESQPQNSTSIASLSVQ 165

BLAST of Lag0000763 vs. NCBI nr
Match: TYK03695.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 1.6e-12
Identity = 60/164 (36.59%), Postives = 86/164 (52.44%), Query Frame = 0

Query: 5   TSSMGTVRNKSYMGS--TAHCCFNELRLQEDKASIIASEETTLQ-GACTNDKSLIKYNPL 64
           TS   T +  SY+G     H C  E++  ED      ++    Q         +IK NP 
Sbjct: 2   TSQGNTSKALSYIGKRPNTHSCSREIQSFEDMPPFEVAKNIWEQISKPPKGGIVIKENPA 61

Query: 65  FE-------------PDSDVVTVMMTETRTMEERMAEMQEHINTLMKAIEEKDSQIEHLK 124
            +             P  ++++VM+T   T E RMAE+++ +N LMK +EE+D +I  LK
Sbjct: 62  VDEHNSLSECSNEEVPQPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLK 121

Query: 125 NQIENQHITESSQIQVIKNNDKGKTIVQDHQPQCSTSNASLSSQ 153
           N IE++   ESS    +KN DKGK ++Q+ QPQ STS ASLS Q
Sbjct: 122 NHIESRDAAESSHKHTVKNTDKGKAVMQESQPQNSTSIASLSVQ 165

BLAST of Lag0000763 vs. NCBI nr
Match: KAA0051994.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04565.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 2.8e-12
Identity = 46/89 (51.69%), Postives = 66/89 (74.16%), Query Frame = 0

Query: 64  PDSDVVTVMMTETRTMEERMAEMQEHINTLMKAIEEKDSQIEHLKNQIENQHITESSQIQ 123
           P  ++++VM+T+  T E+RMAE+++ +N LMKA+EE+D +I  LKN IE++   ESS   
Sbjct: 77  PQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIASLKNHIESRDAIESSHTH 136

Query: 124 VIKNNDKGKTIVQDHQPQCSTSNASLSSQ 153
           +IKN +KGK I+Q+ QPQ STS ASLS Q
Sbjct: 137 IIKNVNKGKAIMQESQPQNSTSIASLSVQ 165

BLAST of Lag0000763 vs. NCBI nr
Match: KAA0050518.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 2.8e-12
Identity = 47/89 (52.81%), Postives = 65/89 (73.03%), Query Frame = 0

Query: 64  PDSDVVTVMMTETRTMEERMAEMQEHINTLMKAIEEKDSQIEHLKNQIENQHITESSQIQ 123
           P  ++++VM+T+  T E+RMAE+++ +N LMKA+EEKD +I  LKN IE++   ESS   
Sbjct: 77  PQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEEKDFEIALLKNHIESRDAAESSHTH 136

Query: 124 VIKNNDKGKTIVQDHQPQCSTSNASLSSQ 153
            IKN +KGK I+Q+ QPQ STS ASLS Q
Sbjct: 137 TIKNANKGKAIMQESQPQNSTSIASLSVQ 165

BLAST of Lag0000763 vs. NCBI nr
Match: KAA0034095.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 4.8e-12
Identity = 49/102 (48.04%), Postives = 70/102 (68.63%), Query Frame = 0

Query: 57  KYNPLFE------PDSDVVTVMMTETRTMEERMAEMQEHINTLMKAIEEKDSQIEHLKNQ 116
           +YN L E      P  ++++VM+T+  T E+RMAE+++ +N LMKA+EE+D +I  LKN 
Sbjct: 64  EYNSLSECSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIALLKNH 123

Query: 117 IENQHITESSQIQVIKNNDKGKTIVQDHQPQCSTSNASLSSQ 153
           IE++   ESS    +KN +KGK I+Q+ QPQ STS ASLS Q
Sbjct: 124 IESRDAAESSHTHTMKNANKGKAIMQESQPQNSTSIASLSVQ 165

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0050337.11.6e-1249.02ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03551.1 ty3-gyp... [more]
TYK03695.11.6e-1236.59retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0051994.12.8e-1251.69ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04565.1 ty3-gyp... [more]
KAA0050518.12.8e-1252.81ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0034095.14.8e-1248.04ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 83..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000763.1Lag0000763.1mRNA