Lag0000725 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0000725
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Heat shock protein DnaJ, cysteine-rich domain containing protein
Location	chr4: 14169235 .. 14171258 (+)
RNA-Seq Expression	Lag0000725
Synteny	Lag0000725

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCAGCTACTTCAACCGTGTCATCATCTGCCATTTTCGTCATTCATCGCAGAAATTACTTTCGAGTAGAAAGATTCAAGCTCGGATATGTTTCGGAAGGAGCAAGTTCTCCAAGATCTTCGCGATCTATCCCAATGGCTCGGCTTGCGGCTCTGCTTCTGGGGTTGGTACTTTTGAAATTGGTTATGTGATTCTCTTTTCTGTTTTTCGGAAATAACTTGAAAGTTCTTTATTCGGTGAATGAATCTGGTGCTGGGTTCATTTAGGTGGAATCGATTATACATTCATTTTTTAGCATTTGGTTGTTTGATGCATATATAGGATTATAATCGACTTTTTTGGCTATGTTTTTTCTGATGGAGGCCGAGTATATTGCTTTTAAGTTATTGCTCTGTTGTATATGTTTTCTTCTATTTCTGCATTCAGTTTAAACTTTACAAAGCTCAATGAGAAAGGGGAAAACATAGAGCTCCCAGAACGTGAAAATGACGGTCTCTTTCAAAAACTATCGTTTGTCTGATGGTTAAATCGCAGAAGCACTCTACTCATGTCTGAAAAAAGAACCATTTTTATACTGTGGTATGATTCCTAGGATAAAACTTCTGGCACTAGGGCTCTTTGCCTGCTGAATTGGCATAACATAATTGATAGCAACTTGCAAGAATATTTGTTTATGATTTTTGATAAGTAAAACCAGCACTTGTGACAAATTTCCTAGTAAGATTGATACCTTCTCTTCAATGAAAACCTCATTGATATTAATGTCATTAGCATCTAGCAGTGACATATAGATGTCAAACATTAGCTCTTTGAACTTTTTCCTTTTCCGTCCTATGTTGGTCTGCATTTTTGTGATTGTGTATTGAATCATATGCTTGTAAGTGTATAGTTCTGCATTCGTAGTTGCTGTCTATTGTGGTTTTGATAATGTTATCAAATTTTCTCGATGTAGCAGGGGGATTCTTCTGCTGCAGAGGTTCATAGACGACGAAGTACTTTTGAATCTCTGTTTTGCTATGATAAGGCTATCCCGGAGGAAAGAATTGAGACGCCTGTTGGAATATCTCTGGCAGAGAAAATGATTGGAGATAATCCCCGTTGCACTGATTGTCATGCCAAAGGTGCTGTCCTTTGCACAACTTGCTCCGGTTCGGGCTTGTATGTTGATTCAATATTGGAGAGCCAGGGAATCATTGTGAAAGTTCGTTGCCTGGGTAAAATTACAGTTCTTCTTAAACTATTTGTATTAGCAACATTTACGAATGGTTCTAGTTATGGGCACTTTTTTCTTAACTGGAGCCCCTTTTGTAATCTTCTTGTAGTTTCTTTTCTGTTTTTTGTTGTTCTTTTGGCTCCTTTTGGTTCAGGCTTCTCATTTTGTTTGGCTCTTTTTTCGTTTGTCTTTTTGTATTCTTTCATTTGTTCTCAATGATTGTTTTTCTTTTCGTAAAAAGAAAGGGCACTTTTGATTTTGACCCCGTCAAATTGTTATTTGTCTATTTTGGACATTGTATTGTGTTTCTATGTTAAACTTCTGTTCTTTTGATAAGTTCAATTATAGGTGTGACCCATGGGTCAACTTTGAAAGCCAGAAAGAAGTCAACAGGATGCTAGATGTTTTTTTTCCTGTAATCACGTCCTTCTATTTTAATTATTTTTTTAAAACTGATGCTGGAAACTGTGGAAACCTTTGAATTCAGTAGGCTTGCTTTTCATCGTCTGCAGCATTTGATTCAATTATGCTTATTGAAAAGGGAAATTTTTGTTTCCTCATTGTTGGTTGGTACATTTAGGTGTCAAATTACAATTTGAGAAGTTTCTGTCCTTACTCTGTATTCATTGTTTTGTAGGTTGTGGTGGAACTGGCAATATCATGTGTTCAGAATGTGGTGGCCGTGGTCACCTGGGATCTAAGTGAGTTGCAAAGGCTCCTTCCCAAAGGATTCATCTTGAACTTTCCTTTTGAAATATTGGGCATTGATTGTGCAATGATGACAGGTATATTGATCTTGCAGTGTAG

mRNA sequence

ATGGATTCAGCTACTTCAACCGTGTCATCATCTGCCATTTTCGTCATTCATCGCAGAAATTACTTTCGAGTAGAAAGATTCAAGCTCGGATATGTTTCGGAAGGAGCAAGTTCTCCAAGATCTTCGCGATCTATCCCAATGGCTCGGCTTGCGGCTCTGCTTCTGGGGTTGGGGGATTCTTCTGCTGCAGAGGTTCATAGACGACGAAGTACTTTTGAATCTCTGTTTTGCTATGATAAGGCTATCCCGGAGGAAAGAATTGAGACGCCTGTTGGAATATCTCTGGCAGAGAAAATGATTGGAGATAATCCCCGTTGCACTGATTGTCATGCCAAAGGTGCTGTCCTTTGCACAACTTGCTCCGGTTCGGGCTTGTATGTTGATTCAATATTGGAGAGCCAGGGAATCATTGTGAAAGTTCGTTGCCTGGGTTGTGGTGGAACTGGCAATATCATGTGTTCAGAATGTGGTGGCCGTGGTCACCTGGGATCTAAGTATATTGATCTTGCAGTGTAG

Coding sequence (CDS)

ATGGATTCAGCTACTTCAACCGTGTCATCATCTGCCATTTTCGTCATTCATCGCAGAAATTACTTTCGAGTAGAAAGATTCAAGCTCGGATATGTTTCGGAAGGAGCAAGTTCTCCAAGATCTTCGCGATCTATCCCAATGGCTCGGCTTGCGGCTCTGCTTCTGGGGTTGGGGGATTCTTCTGCTGCAGAGGTTCATAGACGACGAAGTACTTTTGAATCTCTGTTTTGCTATGATAAGGCTATCCCGGAGGAAAGAATTGAGACGCCTGTTGGAATATCTCTGGCAGAGAAAATGATTGGAGATAATCCCCGTTGCACTGATTGTCATGCCAAAGGTGCTGTCCTTTGCACAACTTGCTCCGGTTCGGGCTTGTATGTTGATTCAATATTGGAGAGCCAGGGAATCATTGTGAAAGTTCGTTGCCTGGGTTGTGGTGGAACTGGCAATATCATGTGTTCAGAATGTGGTGGCCGTGGTCACCTGGGATCTAAGTATATTGATCTTGCAGTGTAG

Protein sequence

MDSATSTVSSSAIFVIHRRNYFRVERFKLGYVSEGASSPRSSRSIPMARLAALLLGLGDSSAAEVHRRRSTFESLFCYDKAIPEERIETPVGISLAEKMIGDNPRCTDCHAKGAVLCTTCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIMCSECGGRGHLGSKYIDLAV

Homology

[Close]

BLAST of Lag0000725 vs. NCBI nr
Match: XP_022154495.1 (uncharacterized protein LOC111021761 isoform X1 [Momordica charantia])

HSP 1 Score: 229.6 bits (584), Expect = 2.1e-56
Identity = 117/165 (70.91%), Postives = 125/165 (75.76%), Query Frame = 0


Query: 1   MDSATSTVSSSAIFVIHRRNYFRVERFKLGYVSEGASSPRSSRSIPMARLAALLLGLGDS 60
           MDSAT TVSSS I     +      + + G         +     P     +   G GDS
Sbjct: 1   MDSATLTVSSSIILRNSSQKLLPGRKIQAGLCFRRRRFSKIFAVYPNGSARSSAPGQGDS 60

Query: 61  SAAEVHRRRSTFESLFCYDKAIPEERIETPVGISLAEKMIGDNPRCTDCHAKGAVLCTTC 120
           SAA+VHRRRSTFESLFCYDKAIPEERIE PVGISLAEK+IGDNPRCTDCHAKGAVLCTTC
Sbjct: 61  SAADVHRRRSTFESLFCYDKAIPEERIEKPVGISLAEKIIGDNPRCTDCHAKGAVLCTTC 120

Query: 121 SGSGLYVDSILESQGIIVKVRCLGCGGTGNIMCSECGGRGHLGSK 166
           SGSGLYVD+ILESQGIIVKVRCLGCGGTGNIMCSECGGRGHL SK
Sbjct: 121 SGSGLYVDAILESQGIIVKVRCLGCGGTGNIMCSECGGRGHLASK 165

[Close]

BLAST of Lag0000725 vs. NCBI nr
Match: KAA0041831.1 (protein EMBRYO SAC DEVELOPMENT ARREST 3 [Cucumis melo var. makuwa] >TYK05352.1 protein EMBRYO SAC DEVELOPMENT ARREST 3 [Cucumis melo var. makuwa])

HSP 1 Score: 229.2 bits (583), Expect = 2.7e-56
Identity = 108/114 (94.74%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 52  ALLLGLGDSSAAEVHRRRSTFESLFCYDKAIPEERIETPVGISLAEKMIGDNPRCTDCHA 111
           ALLLGLGDSSAA+VHRRRS+FESLFCYDKAIPEERIETP+GISLAEKMIG+NPRCTDC A
Sbjct: 4   ALLLGLGDSSAADVHRRRSSFESLFCYDKAIPEERIETPIGISLAEKMIGNNPRCTDCQA 63

Query: 112 KGAVLCTTCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIMCSECGGRGHLGSK 166
           KGAVLC TCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIMCSECGGRGHLGSK
Sbjct: 64  KGAVLCATCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIMCSECGGRGHLGSK 117

[Close]

BLAST of Lag0000725 vs. NCBI nr
Match: XP_038881865.1 (uncharacterized protein LOC120073222 isoform X1 [Benincasa hispida])

HSP 1 Score: 226.5 bits (576), Expect = 1.8e-55
Identity = 116/165 (70.30%), Postives = 125/165 (75.76%), Query Frame = 0


Query: 1   MDSATSTVSSSAIFVIHRRNYFRVERFKLGYVSEGASSPRSSRSIPMARLAALLLGLGDS 60
           MDSAT T+SSS I     +      + + G         + S   P    +    G GDS
Sbjct: 1   MDSATLTMSSSVILRNSSQKLLANRKIQPGLCFARNKFSKISAVYPNGSAS----GQGDS 60

Query: 61  SAAEVHRRRSTFESLFCYDKAIPEERIETPVGISLAEKMIGDNPRCTDCHAKGAVLCTTC 120
           S A+VHRRRS+FESLFCYDKAIPEERIETPVGISLAE+MIGDNPRCTDCHAKG VLC TC
Sbjct: 61  SPADVHRRRSSFESLFCYDKAIPEERIETPVGISLAERMIGDNPRCTDCHAKGVVLCATC 120

Query: 121 SGSGLYVDSILESQGIIVKVRCLGCGGTGNIMCSECGGRGHLGSK 166
           SGSGLYVDSILESQGIIVKVRCLGCGGTGNIMCSECGGRGHLGSK
Sbjct: 121 SGSGLYVDSILESQGIIVKVRCLGCGGTGNIMCSECGGRGHLGSK 161

[Close]

BLAST of Lag0000725 vs. NCBI nr
Match: XP_008442040.1 (PREDICTED: uncharacterized protein LOC103486023 isoform X1 [Cucumis melo])

HSP 1 Score: 225.7 bits (574), Expect = 3.0e-55
Identity = 121/170 (71.18%), Postives = 132/170 (77.65%), Query Frame = 0


Query: 1   MDSATSTVSSSAIFVIHRRNYFRVERFKLGYVSEGASSPRSSRSIPMARLAALLL----- 60
           MDSAT T+SSS I         R    KL  + +   S    R+   +R++AL       
Sbjct: 1   MDSATLTLSSSVI--------LRNSSLKLLVIRKIQPSLCFKRN-EFSRISALYANGSAS 60

Query: 61  GLGDSSAAEVHRRRSTFESLFCYDKAIPEERIETPVGISLAEKMIGDNPRCTDCHAKGAV 120
           G GDSSAA+VHRRRS+FESLFCYDKAIPEERIETP+GISLAEKMIG+NPRCTDC AKGAV
Sbjct: 61  GQGDSSAADVHRRRSSFESLFCYDKAIPEERIETPIGISLAEKMIGNNPRCTDCQAKGAV 120

Query: 121 LCTTCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIMCSECGGRGHLGSK 166
           LC TCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIMCSECGGRGHLGSK
Sbjct: 121 LCATCSGSGLYVDSILESQGIIVKVRCLGCGGTGNIMCSECGGRGHLGSK 161

[Close]

BLAST of Lag0000725 vs. NCBI nr
Match: XP_022154496.1 (uncharacterized protein LOC111021761 isoform X2 [Momordica charantia])

HSP 1 Score: 225.7 bits (574), Expect = 3.0e-55
Identity = 117/165 (70.91%), Postives = 125/165 (75.76%), Query Frame = 0


Query: 1   MDSATSTVSSSAIFVIHRRNYFRVERFKLGYVSEGASSPRSSRSIPMARLAALLLGLGDS 60
           MDSAT TVSSS I     +      + + G         +     P     +   G GDS
Sbjct: 1   MDSATLTVSSSIILRNSSQKLLPGRKIQAGLCFRRRRFSKIFAVYPNGSARSSAPG-GDS 60

Query: 61  SAAEVHRRRSTFESLFCYDKAIPEERIETPVGISLAEKMIGDNPRCTDCHAKGAVLCTTC 120
           SAA+VHRRRSTFESLFCYDKAIPEERIE PVGISLAEK+IGDNPRCTDCHAKGAVLCTTC
Sbjct: 61  SAADVHRRRSTFESLFCYDKAIPEERIEKPVGISLAEKIIGDNPRCTDCHAKGAVLCTTC 120

Query: 121 SGSGLYVDSILESQGIIVKVRCLGCGGTGNIMCSECGGRGHLGSK 166
           SGSGLYVD+ILESQGIIVKVRCLGCGGTGNIMCSECGGRGHL SK
Sbjct: 121 SGSGLYVDAILESQGIIVKVRCLGCGGTGNIMCSECGGRGHLASK 164

The following BLAST results are available for this feature:

BLAST of Lag0000725 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154495.1	2.1e-56	70.91	uncharacterized protein LOC111021761 isoform X1 [Momordica charantia]	[more]
KAA0041831.1	2.7e-56	94.74	protein EMBRYO SAC DEVELOPMENT ARREST 3 [Cucumis melo var. makuwa] >TYK05352.1 p...	[more]
XP_038881865.1	1.8e-55	70.30	uncharacterized protein LOC120073222 isoform X1 [Benincasa hispida]	[more]
XP_008442040.1	3.0e-55	71.18	PREDICTED: uncharacterized protein LOC103486023 isoform X1 [Cucumis melo]	[more]
XP_022154496.1	3.0e-55	70.91	uncharacterized protein LOC111021761 isoform X2 [Momordica charantia]	[more]

BLAST of Lag0000725 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR15852	PLASTID TRANSCRIPTIONALLY ACTIVE PROTEIN	coord: 59..160
None	No IPR available	PANTHER	PTHR15852:SF13	DNAJ/HSP40 CYSTEINE-RICH DOMAIN SUPERFAMILY PROTEIN	coord: 59..160
IPR036410	Heat shock protein DnaJ, cysteine-rich domain superfamily	SUPERFAMILY	57938	DnaJ/Hsp40 cysteine-rich domain	coord: 103..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0000725.1	Lag0000725.1	mRNA