Lag0000694 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0000694
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein DEK
Location	chr4: 13166860 .. 13170602 (+)
RNA-Seq Expression	Lag0000694
Synteny	Lag0000694

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAAGGTTTGTTTGGATTGAGAATGAGGTATTCCATTGTCAAACTTTTACCGCCTTTCTTTTTAGAAAGAGCCTTGAAAGATTACATAATGTGTTTCAACTATGAGTTGTAGTATGACCTTGATTGAAAATGTCATCTTGATTTCTGATTTGTGGCTGTATATGTACTTTACTTTTTGGTTCATGTGTTCTTGGCAGGAAAAGCAAAGGTCAAAGGTAAAGGAGAAGCTCGAGAAATGTGTCAAAGAAAAATTAGTGGATTTTTGTGATGTGCTAAATATCCCAATAAACAAAGCCAGTGTAAAGAAGGCAAGAATTTATGAGCCAATATCTCTTGAATGTGTTGGATTTTTTCTATCTCAAACTTACTTCTTTGGTCCTATGTCTTCAGGAGGAACTCTCGGCAAAGTTATTAGAATTTTTGGAGTCACCACATGCTACAACGGATGTTTTACTGGCTGATAAGGAGCAGGTTTTGTTCAATCATTGTTGACTTGTTGTATTGTGTATCATCAATTGTTAGACTGTTAAAAGCTTGTTGTCTGTCTGCATTTCAGAAAGGCAAAAAGCGACGGAGGGCCAGTTCAGGCAAGGTAGTTGGTTCTGGAGAATCTGCAGAAGTGTCTGCTAAGGTATTCATTCACAGTTGCAGTGGTTTTGTTTGGACACTCTTTTATGGCATTGAATCTTTCCTTTTCTTCTTTGGGTTCAATGCCTTAAAGTTTCCAAATCCCCAGTATGTGTTGGGGGTTCAGAATACAAATATCCACAAGTTGATTAGTAGATTCTATTATGTTCTGATTAAATGCATGATTTCGTTGACTTTCTTTTCTTTTTTGAAATCTGTTATTAAGATGTAAGTATATTACTTTTACTTGATTGGAGTTTCTCATTTAATGAGACTTCCTTTTGTGTGTGTGGTTTTTTCTTAATGTTCTCACTCTTTCATTTTTTTCTCAATGAAAGTTTGTTTCTTGTAAGAGAGAGTGCAAGTATATTACTACGTGAAAGAGAAGGAGAAACTCTAGCAGATTTTTAGTTAGCTAATGGGGAGCATCTGGTTTGTGAATGAAAATATCTAAAATTTTTGAGAGGGGCATGTAAATCATAGAATGGGATCAAGGTAAAACTCAGATGACATAAAACACTGAATCGATTGTCAGCTGCACACATTGGTGAATAAGGGGATTGACATCAATTTACAAATTCTCAATGGGGTTGTTTGCTAAAAAAGATGTCTGTATTTCTTAAGATATAGCGGGTCAATGCTCTCTACCATTTTAAATGACATGCCTACTAGATTGTGTCTAAATTTGAAATGGTTTGTTGAGTTATCTCTTGCAATTGAGATGTTATACCATAGATTTTCCCTCAAATTCGCTCTCAAACAGCTTCCATTTCAATGATTTACAGGTTCTTTCTCTCTTTTTGCTTTTGGGTCTTCCTCTATTTTTCCCTTTCTCTTTTCAGTCTCTGTTGACTTGGAAAATTTATTTTTGAGACTTAAGGCTAGGGTTTACATTCAGGCTAAAGATGCAGCAACCACGGCAAATGTTGCCCATGATGCCTTTGTTTCCCCTCACCAATATCACCACCGAGCAGATTCAAAAGGCAAGCTCTTTCTCTTTCTTCTTTACTTTTTACTCAAACGCCTGTTTTTGCACACATGGTAGTGTAGTAATGTCCGCTCCTTGACTTGATGGAGCTTTGTTTGTGGCACTGGATGTGATTTTGAAAGAAAAATGTTTTTGTTCTTGATGAGTTATTAGCTTTTACATGAATGACTCCTTTAATGGTTGGATGTTTCCAGATGGCAAAAACCAAGTAAAGTAGGTCCCTTGATGGGAGTATTATTTAAGGGATGTAGTAGTAGTTGGAGATCATTATGTAATTATTTTTAATCCTTTTCACATACTACCTGATAGGTTTGTCCCCTGCAAAAGCTAGTTTTATCAGTGAATCTTTTCATTAGAGGACATAGGGAGGAAGAATATGTTGGTTCACTCATTATTCTTTTTTTATAAGTTTGTTTGTTAGGGCAAGATGCTATTATTCTTGCCTACTTGAAAGATGAATTTTATCTTTAATTAACAATTGAAAATCACATGATAATATTCTATTGGAAACATGGTTCTGGAGATTAAGTCTAGTCATAGTGTTGGACTGCTAGTTGCATATTTGATATTGGAGTTGGGAGATTAAGTCTAGTCATAGCCTTGTTCACTTCTAACATTTGAGAGATCAATCTTTGCAACTTCAATCCTTGGGATCTTCCAAGTCAGCTTCCTTTCATTTCTTATCTTGTAACTTGAGTTTGTACGAAAAGAAAACATTAAATAATGATAGATTATGTAGTTACGAAGGTGGATTGGGGATGTTGGGAGTGCGTCCAAAGTCCCACATTGGCTAGATAAGGGGATGATCATGGGTATTTAAGGGAGGACAAGTATTCCATTGGTATGAGGCCTTTGGGGTGATCCAAAAGCAAAACCATGAGGGCTTATGCCCAAAGTGGACAATATCATACCATTGTGGAGATATGAGTGTGTTCGGTAGTCCCTTATCAAGTGGTATCAGAGCCATGCCCCGGGAGTAGTCGTGTTCGGTGGAATCCTCGGGTTCCGAACAAAGAAAGTTGTGAGCCTTAATAGTCATGGTGGAGGTCCGTGGTTGAGCTCTGGGTGGGCGGGTATACTCCGGAGAAGAGGAGTCGTCCTAGATAAGAGCAAGAACTCTCGGTAAAGCGGTGAAGCCTAGAGAGTTGGACGGATAGATGACTATTTGAGGGGAGGCTCGGTGGTACTTTGTTCGAGGGGAGGATTGTTGGGAGTGCGTCCAAAGTCCCACATCGGCTAGATAAGGGGATGATCATGGGTATATAAGGGAGGACTAGTATCTCCATTGGTATGAGGCCTTTTGGGGTGATCCAAAAGCAAAGCCATGAGGGTGTATGCCCAAAGTGGACAATATCATACCATTGTGGAGATATGTGGTTGTCCGGTAGTCCCTTACAGGGAGGAAAAAATATACTTCTTTAACAACAAGGAATTGGGAAAAATGATGCTCTGTTATGTTCATAAGTTTTGATAACATTGTTCATGCTATTTTGATGGGTTTATTGTGGTTATCTTATTTATGAGTTGTTATTTCTTTTTGTTGACTTTCTTGCACATAAGAAAGGAAGCTAGGATGTTTAATTACTTTTCCTCATTTGAGTTTGAAACAAAAGAAACTCCATATCTGATTAGTTTTTCCTGAACTAACTTGCTTAGTTTTAGGATATTTGGGGTCTTGTTGTGAACCTGAAGTGTTGTGATTTTTTTTTCATATAGAAGTGTGTTTCTCTTGTTTAACATGTTTAAAATTTTTTGGGTTAGTCATATGTATGTCGTTATGCTGTCGAAATTTCTAAAGCAACCGGTTAGAATTAGGATAGAGACTTTAGTAATGTCTCTAGGTTAAGTATAGAAACCTAGAGCATTACAGGTTCTCTGAAGGGGTTTGCATTAGAACAAGTACTTTCTCATATGCCTCATCCTCGTAAATATGATACAATGCAATTTTGATTTATAAATTTATTTTTGGACTATTAAATGCGTAACTTAAGCCATATGCTTTCCATGATATTCAGGCTGTTGAAGTTGTGGGACCACTACGACAATGATTACCTTCCTTCTGAGTATCAGCTTGATATAACTTCTATCAAAATCACTGACTATATGTGTACTTATTTTGTTTAG

mRNA sequence

ATGAGAAAGGAAAAGCAAAGGTCAAAGGTAAAGGAGAAGCTCGAGAAATGTGTCAAAGAAAAATTAGTGGATTTTTGTGATGTGCTAAATATCCCAATAAACAAAGCCAGTGTAAAGAAGGAGGAACTCTCGGCAAAGTTATTAGAATTTTTGGAGTCACCACATGCTACAACGGATGTTTTACTGGCTGATAAGGAGCAGAAAGGCAAAAAGCGACGGAGGGCCAGTTCAGGCAAGGTAGTTGGTTCTGGAGAATCTGCAGAAGTGTCTGCTAAGTCCCTTATCAAGTGGTATCAGAGCCATGCCCCGGGAGTAGTCGTGTTCGGTGGAATCCTCGGGTTCCGAACAAAGAAAGTTGTGAGCCTTAATAGTCATGGTGGAGGTCCGTGGTTGAGCTCTGGGTGGGCGGGTATACTCCGGAGAAGAGGAGTCGTCCTAGATAAGAGCAAGAACTCTCGGCTGTTGAAGTTGTGGGACCACTACGACAATGATTACCTTCCTTCTGAGTATCAGCTTGATATAACTTCTATCAAAATCACTGACTATATGTGTACTTATTTTGTTTAG

Coding sequence (CDS)

ATGAGAAAGGAAAAGCAAAGGTCAAAGGTAAAGGAGAAGCTCGAGAAATGTGTCAAAGAAAAATTAGTGGATTTTTGTGATGTGCTAAATATCCCAATAAACAAAGCCAGTGTAAAGAAGGAGGAACTCTCGGCAAAGTTATTAGAATTTTTGGAGTCACCACATGCTACAACGGATGTTTTACTGGCTGATAAGGAGCAGAAAGGCAAAAAGCGACGGAGGGCCAGTTCAGGCAAGGTAGTTGGTTCTGGAGAATCTGCAGAAGTGTCTGCTAAGTCCCTTATCAAGTGGTATCAGAGCCATGCCCCGGGAGTAGTCGTGTTCGGTGGAATCCTCGGGTTCCGAACAAAGAAAGTTGTGAGCCTTAATAGTCATGGTGGAGGTCCGTGGTTGAGCTCTGGGTGGGCGGGTATACTCCGGAGAAGAGGAGTCGTCCTAGATAAGAGCAAGAACTCTCGGCTGTTGAAGTTGTGGGACCACTACGACAATGATTACCTTCCTTCTGAGTATCAGCTTGATATAACTTCTATCAAAATCACTGACTATATGTGTACTTATTTTGTTTAG

Protein sequence

MRKEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLLADKEQKGKKRRRASSGKVVGSGESAEVSAKSLIKWYQSHAPGVVVFGGILGFRTKKVVSLNSHGGGPWLSSGWAGILRRRGVVLDKSKNSRLLKLWDHYDNDYLPSEYQLDITSIKITDYMCTYFV

Homology

[Close]

BLAST of Lag0000694 vs. NCBI nr
Match: XP_022135017.1 (protein DEK [Momordica charantia])

HSP 1 Score: 158.3 bits (399), Expect = 6.5e-35
Identity = 84/90 (93.33%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 3   KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLL 62
           +EKQRSKVK+KLEKCVKEKLVDFCDVLNIPINK SVKKEE+SAKLLEFLESPHATTDVLL
Sbjct: 270 QEKQRSKVKDKLEKCVKEKLVDFCDVLNIPINKTSVKKEEVSAKLLEFLESPHATTDVLL 329

Query: 63  ADKEQKGKKRRRASSGKVVGSGESAEVSAK 93
           ADKEQKGKKRRR SSGK+VGSGESAEVSAK
Sbjct: 330 ADKEQKGKKRRRVSSGKIVGSGESAEVSAK 359

[Close]

BLAST of Lag0000694 vs. NCBI nr
Match: TYJ98436.1 (protein DEK [Cucumis melo var. makuwa])

HSP 1 Score: 155.2 bits (391), Expect = 5.5e-34
Identity = 84/90 (93.33%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 3   KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLL 62
           +EKQRSKVKEK+EKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLL
Sbjct: 257 EEKQRSKVKEKIEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLL 316

Query: 63  ADKEQKGKKRRRASSGKVVGSGESAEVSAK 93
           ADKEQK KKRRR+SSGK VGSGESAEV AK
Sbjct: 317 ADKEQKVKKRRRSSSGKAVGSGESAEVPAK 346

[Close]

BLAST of Lag0000694 vs. NCBI nr
Match: XP_008464404.1 (PREDICTED: protein DEK [Cucumis melo])

HSP 1 Score: 155.2 bits (391), Expect = 5.5e-34
Identity = 84/90 (93.33%), Postives = 87/90 (96.67%), Query Frame = 0


Query: 3   KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLL 62
           +EKQRSKVKEK+EKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLL
Sbjct: 257 EEKQRSKVKEKIEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLL 316

Query: 63  ADKEQKGKKRRRASSGKVVGSGESAEVSAK 93
           ADKEQK KKRRR+SSGK VGSGESAEV AK
Sbjct: 317 ADKEQKVKKRRRSSSGKAVGSGESAEVPAK 346

[Close]

BLAST of Lag0000694 vs. NCBI nr
Match: XP_022921407.1 (DNA ligase 1 [Cucurbita moschata])

HSP 1 Score: 154.8 bits (390), Expect = 7.2e-34
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 3   KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLL 62
           +EKQRSKVKEKLEKC KEKLVDFCDVLNIPINK +VKKEELSAKLLEFLESPHATTDVLL
Sbjct: 264 EEKQRSKVKEKLEKCFKEKLVDFCDVLNIPINKTTVKKEELSAKLLEFLESPHATTDVLL 323

Query: 63  ADKEQKGKKRRRASSGKVVGSGESAEVSAK 93
           ADK+QKGKKRRRASSGK VGSGESAEV AK
Sbjct: 324 ADKDQKGKKRRRASSGKTVGSGESAEVPAK 353

[Close]

BLAST of Lag0000694 vs. NCBI nr
Match: XP_023515903.1 (protein DEK-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 154.8 bits (390), Expect = 7.2e-34
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 3   KEKQRSKVKEKLEKCVKEKLVDFCDVLNIPINKASVKKEELSAKLLEFLESPHATTDVLL 62
           +EKQRSKVKEKLEKC KEKLVDFCDVLNIPINK +VKKEELSAKLLEFLESPHATTDVLL
Sbjct: 264 EEKQRSKVKEKLEKCFKEKLVDFCDVLNIPINKTTVKKEELSAKLLEFLESPHATTDVLL 323

Query: 63  ADKEQKGKKRRRASSGKVVGSGESAEVSAK 93
           ADK+QKGKKRRRASSGK VGSGESAEV AK
Sbjct: 324 ADKDQKGKKRRRASSGKTVGSGESAEVPAK 353

The following BLAST results are available for this feature:

BLAST of Lag0000694 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135017.1	6.5e-35	93.33	protein DEK [Momordica charantia]	[more]
TYJ98436.1	5.5e-34	93.33	protein DEK [Cucumis melo var. makuwa]	[more]
XP_008464404.1	5.5e-34	93.33	PREDICTED: protein DEK [Cucumis melo]	[more]
XP_022921407.1	7.2e-34	92.22	DNA ligase 1 [Cucurbita moschata]	[more]
XP_023515903.1	7.2e-34	92.22	protein DEK-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0000694 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..81
None	No IPR available	PANTHER	PTHR13468:SF13	OS01G0924900 PROTEIN	coord: 3..93
IPR044198	Protein DEK	PANTHER	PTHR13468	DEK PROTEIN	coord: 3..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0000694.1	Lag0000694.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006325	chromatin organization
biological_process	GO:2000779	regulation of double-strand break repair
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0042393	histone binding
molecular_function	GO:0016874	ligase activity