Lag0000686 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0000686
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Eukaryotic translation initiation factor 3 subunit I
Location	chr4: 12906709 .. 12907449 (+)
RNA-Seq Expression	Lag0000686
Synteny	Lag0000686

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGAAACACTGAAAATGGTGGCCAACAATGGAGTTCGATGGAAGAAGTCCCAAACTAAAGTGAAGACATTAGTGTCAAGTGATCTCAAGCCAGAATCAGTAGTGTGGCTTCACTTTATAAGGAACAGGTTGATGCCAACAACCCATGATAGCACCATTTCAGTAGAGAGAGTTATGCTCCTTTACAGTATTATGAAGGGTTTTGAAATCAACATCGGGATCATCATCAGGGAGGAAATCCTTTCGTGTGGAAGGAAGAAAGCAAAGAAGCTTTTCTTTGGGTCCCTTATTACCCAATTATGTTAGAGAGTCAAAATAGTTCCTGGAAAAGATGAAGAGCTCCACTTCTTCAAGCCTACCATTAATCTATCACTGATTGGGAAGCTCGAACAGAACAATGCCTAGAGAAAAGACAAAGCTTCCACATCTCAAGCCACTCCACCATCAAGGCTGAATCTGGCTTCTCCACCTCAACATACTCCTTTTTCAGGGCCCTCACCATCATCTGAAGACCTAGCAATTGCCTATCAACAACTGGATCAAATCAGGGACAACCTGAGGACTTATTGGGCTTATGCCAAGGAGAGACATGAAGCCATTAGAGAGTTTTACCTCTCTATCACCCCGAGTATTGCTCTTGTCTTTCCTTATTTCCCTCAATCGTTGCTGCCTCAAGAAGATAAGGATTCTGAAGATGAAGAAGAAGATGAAAGAGAGAGTTCCTCGGATAAGGACTAA

mRNA sequence

ATGAAAGAAACACTGAAAATGGTGGCCAACAATGGAGTTCGATGGAAGAAGTCCCAAACTAAAGTGAAGACATTAGTGTCAAGTGATCTCAAGCCAGAATCAGTAGTGTGGCTTCACTTTATAAGGAACAGGTTGATGCCAACAACCCATGATAGCACCATTTCAGTAGAGAGAGTTATGCTCCTTTACAGTATTATGAAGGGTTTTGAAATCAACATCGGGATCATCATCAGGGAGGAAATCCTTTCGTGTGGAAGGAAGAAAGCAAAGAAGCTTTTCTTTGGGTCCCTTATTACCCAATTATGGCCCTCACCATCATCTGAAGACCTAGCAATTGCCTATCAACAACTGGATCAAATCAGGGACAACCTGAGGACTTATTGGGCTTATGCCAAGGAGAGACATGAAGCCATTAGAGAGTTTTACCTCTCTATCACCCCGAGTATTGCTCTTGTCTTTCCTTATTTCCCTCAATCGTTGCTGCCTCAAGAAGATAAGGATTCTGAAGATGAAGAAGAAGATGAAAGAGAGAGTTCCTCGGATAAGGACTAA

Coding sequence (CDS)

ATGAAAGAAACACTGAAAATGGTGGCCAACAATGGAGTTCGATGGAAGAAGTCCCAAACTAAAGTGAAGACATTAGTGTCAAGTGATCTCAAGCCAGAATCAGTAGTGTGGCTTCACTTTATAAGGAACAGGTTGATGCCAACAACCCATGATAGCACCATTTCAGTAGAGAGAGTTATGCTCCTTTACAGTATTATGAAGGGTTTTGAAATCAACATCGGGATCATCATCAGGGAGGAAATCCTTTCGTGTGGAAGGAAGAAAGCAAAGAAGCTTTTCTTTGGGTCCCTTATTACCCAATTATGGCCCTCACCATCATCTGAAGACCTAGCAATTGCCTATCAACAACTGGATCAAATCAGGGACAACCTGAGGACTTATTGGGCTTATGCCAAGGAGAGACATGAAGCCATTAGAGAGTTTTACCTCTCTATCACCCCGAGTATTGCTCTTGTCTTTCCTTATTTCCCTCAATCGTTGCTGCCTCAAGAAGATAAGGATTCTGAAGATGAAGAAGAAGATGAAAGAGAGAGTTCCTCGGATAAGGACTAA

Protein sequence

MKETLKMVANNGVRWKKSQTKVKTLVSSDLKPESVVWLHFIRNRLMPTTHDSTISVERVMLLYSIMKGFEINIGIIIREEILSCGRKKAKKLFFGSLITQLWPSPSSEDLAIAYQQLDQIRDNLRTYWAYAKERHEAIREFYLSITPSIALVFPYFPQSLLPQEDKDSEDEEEDERESSSDKD

Homology

[Close]

BLAST of Lag0000686 vs. NCBI nr
Match: PON62892.1 (hypothetical protein PanWU01x14_135680 [Parasponia andersonii])

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-14
Identity = 45/97 (46.39%), Postives = 62/97 (63.92%), Query Frame = 0


Query: 5   LKMVANNGVRWKKSQTKVKTLVSSDLKPESVVWLHFIRNRLMPTTHDSTISVERVMLLYS 64
           L+ VA  G  W  S     T + S L P + VW HF+++RL+PTTH  T+S ERV+LLYS
Sbjct: 52  LETVAIAGAEWNVSSQGAYTCLRSSLNPPAKVWYHFLKSRLLPTTHGKTVSKERVLLLYS 111

Query: 65  IMKGFEINIGIIIREEILSCGRKKAKKLFFGSLITQL 102
           ++ G  IN+G II  EI +   +K+  LFF SLIT++
Sbjct: 112 MLTGKSINVGQIIHREICAYAARKSGALFFPSLITRM 148

[Close]

BLAST of Lag0000686 vs. NCBI nr
Match: PON78020.1 (hypothetical protein PanWU01x14_023740 [Parasponia andersonii])

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-14
Identity = 70/231 (30.30%), Postives = 104/231 (45.02%), Query Frame = 0


Query: 5   LKMVANNGVRWKKSQTKVKTLVSSDLKPESVVWLHFIRNRLMPTTHDSTISVERVMLLYS 64
           L+ VA  G  W  S     T + S L P + VW HF+++RL+PTTH   +S +R++LL+S
Sbjct: 75  LETVAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGKIVSKDRMLLLHS 134

Query: 65  IMKGFEINIGIIIREEILSCGRKKAKKLFFGSLITQL----------------------- 124
           ++ G  IN+G +I  EI +C  +K   LFF SLIT+L                       
Sbjct: 135 MLNGKSINVGRMIHSEIRACAAQKTGALFFPSLITRLCRNAPFLVNEEKLHNTGEIDAIA 194

Query: 125 ------------WPSPSSEDLAIA---------YQQLDQIRDNL----------RTYWAY 182
                          PSS   A A          QQL  +   L          + +WAY
Sbjct: 195 VARITQEGPTESTQQPSSSRPAAASSSRTNGDVLQQLKALEQRLSQQEHTHKQQQQFWAY 254

[Close]

BLAST of Lag0000686 vs. NCBI nr
Match: PON70375.1 (hypothetical protein PanWU01x14_080440 [Parasponia andersonii])

HSP 1 Score: 90.1 bits (222), Expect = 2.1e-14
Identity = 44/97 (45.36%), Postives = 60/97 (61.86%), Query Frame = 0


Query: 5   LKMVANNGVRWKKSQTKVKTLVSSDLKPESVVWLHFIRNRLMPTTHDSTISVERVMLLYS 64
           L+ VA  G  W  S     T + S L P + VW HF+++RL+PTTH  T+S E V LLYS
Sbjct: 166 LETVAIVGAEWNVSSQGAYTCLRSSLNPPAKVWYHFLKSRLLPTTHGKTVSKEHVSLLYS 225

Query: 65  IMKGFEINIGIIIREEILSCGRKKAKKLFFGSLITQL 102
           ++ G  IN+G +I  EI +C  +K+  LFF SLIT +
Sbjct: 226 MLTGKSINVGRMIHREICACAARKSGALFFPSLITSM 262

[Close]

BLAST of Lag0000686 vs. NCBI nr
Match: PON44141.1 (hypothetical protein PanWU01x14_268850 [Parasponia andersonii])

HSP 1 Score: 89.7 bits (221), Expect = 2.8e-14
Identity = 43/97 (44.33%), Postives = 62/97 (63.92%), Query Frame = 0


Query: 5   LKMVANNGVRWKKSQTKVKTLVSSDLKPESVVWLHFIRNRLMPTTHDSTISVERVMLLYS 64
           L+ VA  GV W  S       + S L P + VW HF+++ L+PTTH   +S ERV+LLYS
Sbjct: 93  LETVAIAGVEWNVSFQGAYIYLRSSLNPHAKVWYHFLKSHLLPTTHGKIVSKERVLLLYS 152

Query: 65  IMKGFEINIGIIIREEILSCGRKKAKKLFFGSLITQL 102
           ++ G  IN+G +I  EI +C  +K++ LFF SLIT++
Sbjct: 153 MLTGKSINVGRMIHREICACAARKSRALFFPSLITRM 189

[Close]

BLAST of Lag0000686 vs. NCBI nr
Match: PON50458.1 (hypothetical protein PanWU01x14_223230, partial [Parasponia andersonii])

HSP 1 Score: 89.7 bits (221), Expect = 2.8e-14
Identity = 43/97 (44.33%), Postives = 62/97 (63.92%), Query Frame = 0


Query: 5   LKMVANNGVRWKKSQTKVKTLVSSDLKPESVVWLHFIRNRLMPTTHDSTISVERVMLLYS 64
           L+ VA  G  W  S   V T + S L P + +W HF+++RL+PTTH   +S ERV+LLYS
Sbjct: 62  LETVAIAGAEWNVSSQGVYTCLRSSLNPPAKIWYHFLKSRLLPTTHGKIVSKERVLLLYS 121

Query: 65  IMKGFEINIGIIIREEILSCGRKKAKKLFFGSLITQL 102
           ++ G  IN+G +I  EI +C  +K+  LFF SLI ++
Sbjct: 122 MLTGKSINMGRMIHREICACAARKSGALFFPSLIIRM 158

The following BLAST results are available for this feature:

BLAST of Lag0000686 vs. NCBI nr


Match Name	E-value	Identity	Description
PON62892.1	1.2e-14	46.39	hypothetical protein PanWU01x14_135680 [Parasponia andersonii]	[more]
PON78020.1	1.6e-14	30.30	hypothetical protein PanWU01x14_023740 [Parasponia andersonii]	[more]
PON70375.1	2.1e-14	45.36	hypothetical protein PanWU01x14_080440 [Parasponia andersonii]	[more]
PON44141.1	2.8e-14	44.33	hypothetical protein PanWU01x14_268850 [Parasponia andersonii]	[more]
PON50458.1	2.8e-14	44.33	hypothetical protein PanWU01x14_223230, partial [Parasponia andersonii]	[more]

BLAST of Lag0000686 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 165..183

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0000686.1	Lag0000686.1	mRNA