Lag0000662 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0000662
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr4: 12241942 .. 12242277 (+)
RNA-Seq Expression	Lag0000662
Synteny	Lag0000662

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGCACCAAAGAAAGCTCCCGCGAAGGTTACAACATCAAGCGACTCTTACACGGGTCCTGTCACTCATAGTCGTTCCCAAGGAATAGAGATTAAGGAGGATCACACTCCTCTCGCTGTTGCAAGCAGGATCTCAAAGTTGATTGAAGAATCCTCTAAGGATAAGGTTGCGGTCAAAGACAACCCGTTGTTCGAATCTGTCATTCCAACATCTAAGCAACCAAATGATACACTAAATCCTAATGTGATGTCCGTCATGATGGATGATGTAGACCAGGATGAAAGTATGGCAGAGATGGAAAGAAAACTCAATCTCTTAATGAAGGCAGTTTGA

mRNA sequence

ATGATGGCACCAAAGAAAGCTCCCGCGAAGGTTACAACATCAAGCGACTCTTACACGGGTCCTGTCACTCATAGTCGTTCCCAAGGAATAGAGATTAAGGAGGATCACACTCCTCTCGCTGTTGCAAGCAGGATCTCAAAGTTGATTGAAGAATCCTCTAAGGATAAGGTTGCGGTCAAAGACAACCCGTTGTTCGAATCTGTCATTCCAACATCTAAGCAACCAAATGATACACTAAATCCTAATGTGATGTCCGTCATGATGGATGATGTAGACCAGGATGAAAGTATGGCAGAGATGGAAAGAAAACTCAATCTCTTAATGAAGGCAGTTTGA

Coding sequence (CDS)

ATGATGGCACCAAAGAAAGCTCCCGCGAAGGTTACAACATCAAGCGACTCTTACACGGGTCCTGTCACTCATAGTCGTTCCCAAGGAATAGAGATTAAGGAGGATCACACTCCTCTCGCTGTTGCAAGCAGGATCTCAAAGTTGATTGAAGAATCCTCTAAGGATAAGGTTGCGGTCAAAGACAACCCGTTGTTCGAATCTGTCATTCCAACATCTAAGCAACCAAATGATACACTAAATCCTAATGTGATGTCCGTCATGATGGATGATGTAGACCAGGATGAAAGTATGGCAGAGATGGAAAGAAAACTCAATCTCTTAATGAAGGCAGTTTGA

Protein sequence

MMAPKKAPAKVTTSSDSYTGPVTHSRSQGIEIKEDHTPLAVASRISKLIEESSKDKVAVKDNPLFESVIPTSKQPNDTLNPNVMSVMMDDVDQDESMAEMERKLNLLMKAV

Homology

[Close]

BLAST of Lag0000662 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-13
Identity = 53/110 (48.18%), Postives = 72/110 (65.45%), Query Frame = 0


Query: 2   MAPKKAPAKVTTSSDSYTGPVTHSRSQGIEIKEDHTPLAVASRISKLIEESSKDKVAVKD 61
           MA KKA +K + +SD+YTGP+T SRS+GI I+      A+A  I K + ES K  + +K+
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGI-IQGQDQGSAIAQSILKQLMESPKAGIVIKE 60

Query: 62  NPLFESVIPTSKQPNDTLNPNVMSVMMDDVDQDESMAEMERKLNLLMKAV 112
           NPL+      S +     +P+VMSVMM DV  + +MAEMERK+NLLMK V
Sbjct: 61  NPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKINLLMKVV 109

[Close]

BLAST of Lag0000662 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-13
Identity = 53/110 (48.18%), Postives = 72/110 (65.45%), Query Frame = 0


Query: 2   MAPKKAPAKVTTSSDSYTGPVTHSRSQGIEIKEDHTPLAVASRISKLIEESSKDKVAVKD 61
           MA KKA +K + +SD+YTGP+T SRS+GI I+      A+A  I K + ES K  + +K+
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGI-IQGQDQGSAIAQSILKQLMESPKAGIVIKE 60

Query: 62  NPLFESVIPTSKQPNDTLNPNVMSVMMDDVDQDESMAEMERKLNLLMKAV 112
           NPL+      S +     +P+VMSVMM DV  + +MAEMERK+NLLMK V
Sbjct: 61  NPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKINLLMKVV 109

[Close]

BLAST of Lag0000662 vs. NCBI nr
Match: XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-13
Identity = 53/110 (48.18%), Postives = 72/110 (65.45%), Query Frame = 0


Query: 2   MAPKKAPAKVTTSSDSYTGPVTHSRSQGIEIKEDHTPLAVASRISKLIEESSKDKVAVKD 61
           MA KKA +K + +SD+YTGP+T SRS+GI I+      A+A  I K + ES K  + +K+
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGI-IQGQDQGSAIAQSILKQLMESPKAGIVIKE 60

Query: 62  NPLFESVIPTSKQPNDTLNPNVMSVMMDDVDQDESMAEMERKLNLLMKAV 112
           NPL+      S +     +P+VMSVMM DV  + +MAEMERK+NLLMK V
Sbjct: 61  NPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKINLLMKVV 109

[Close]

BLAST of Lag0000662 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-13
Identity = 53/110 (48.18%), Postives = 72/110 (65.45%), Query Frame = 0


Query: 2   MAPKKAPAKVTTSSDSYTGPVTHSRSQGIEIKEDHTPLAVASRISKLIEESSKDKVAVKD 61
           MA KKA +K + +SD+YTGP+T SRS+GI I+      A+A  I K + ES K  + +K+
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGI-IQGQDQGSAIAQSILKQLMESPKAGIVIKE 60

Query: 62  NPLFESVIPTSKQPNDTLNPNVMSVMMDDVDQDESMAEMERKLNLLMKAV 112
           NPL+      S +     +P+VMSVMM DV  + +MAEMERK+NLLMK V
Sbjct: 61  NPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKINLLMKVV 109

[Close]

BLAST of Lag0000662 vs. NCBI nr
Match: XP_031737053.1 (uncharacterized protein LOC116402138 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 1.4e-13
Identity = 53/110 (48.18%), Postives = 72/110 (65.45%), Query Frame = 0


Query: 2   MAPKKAPAKVTTSSDSYTGPVTHSRSQGIEIKEDHTPLAVASRISKLIEESSKDKVAVKD 61
           MA KKA +K + +SD+YTGP+T SRS+GI I+      A+A  I K + ES K  + +K+
Sbjct: 1   MASKKAASKSSAASDTYTGPITRSRSKGI-IQGQDQGSAIAQSILKQLMESPKAGIVIKE 60

Query: 62  NPLFESVIPTSKQPNDTLNPNVMSVMMDDVDQDESMAEMERKLNLLMKAV 112
           NPL+      S +     +P+VMSVMM DV  + +MAEMERK+NLLMK V
Sbjct: 61  NPLYNDYDSASSRSLKEAHPDVMSVMMADVAVETAMAEMERKINLLMKVV 109

The following BLAST results are available for this feature:

BLAST of Lag0000662 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739134.1	1.4e-13	48.18	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]
XP_031742032.1	1.4e-13	48.18	uncharacterized protein LOC116404025 [Cucumis sativus]	[more]
XP_031742199.1	1.4e-13	48.18	uncharacterized protein LOC105435721 [Cucumis sativus]	[more]
XP_031735972.1	1.4e-13	48.18	uncharacterized protein LOC116401693 [Cucumis sativus]	[more]
XP_031737053.1	1.4e-13	48.18	uncharacterized protein LOC116402138 [Cucumis sativus]	[more]

BLAST of Lag0000662 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0000662.1	Lag0000662.1	mRNA