Lag0000661 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0000661
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein RIK isoform X1
Location	chr4: 12235549 .. 12236986 (-)
RNA-Seq Expression	Lag0000661
Synteny	Lag0000661

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGAGGACAGTGACGTTAGGGTTTCTTCCGACGAACACATCGCAGTCCCCAACATTGATTCCTCTTCTCAAACAAAGCCAAGGTATTTCTCATCTCTCCATGTCCGATTGTACTCGAATCCCCTTCTCGTTCATTTCATCTCCTTCGAGAAAATGAGCGAGATCTTGGTTGTATAGTTTTGGAGGATATCATCCCATGTGTTTCTCGGTTGCCATACGATCTATTCGTTTTGCTCGTCTCTAGATTTTCTTTGAAAGCTTCAATTTATGTGGGTTGGTTAGTCCTAGTTCACAAAGTATTGAATTTAGTTTGAACTAATTCTTCCTAGTTGATTTTAGCAATCAATAAACTCATCAATTGAAGTGAACTACAGGGAATATTGTCGATCTTTCAATAATACTCGCTATCTGTGCTTTTTTTTTGTTCACATTCGCAGAAAGAAAAGAAAGTGGGATCAACCTGCGGAGTCCTTTCTTTCTACTGGTATTGCAGTTCCAGGGATCCTCCCATCATGCACCATGATGCCCCTTGGTGGGGTTGCTGTCGCCAGTGTGGCGGCCCTGGTACCGGTTTCTTCAGTGAACTGTGCAACCTTAACCCAGGTGATTTAATATCTTATATTATAGTTATATACAGCCGTTGGCAGTCAGATGCTTTGTATCTTCCTACGGAGGCCTTCTTATCTTTTATGAAGCTTCAGAATTTACATAAATCATACAAAGAATTCCTGTATCCATCACTAATGTTCTATTTTTCCTTATAATCCAATGACACCAGAGGAGGGAATTTGAAGCATTCCTCCATTGCATGCTTGGTTGTGCGTGTGTTTTCTTGTCATGTTTTATACGAGATTCAGTATTAATTAATAAGGATTAAATTTCGTTCACTTATTATAACAATCTATACATGTTTCATGCTACCCATGTTTTTTTTCCCGATATACTCATTAATATTTCTGTAACTCTAGAATTTTATCAGTTTCTTAGTTGTTGATGTTTTCAGTATTTGTCTATGTCAGTTACTCCTAAGGCTTGTCTGAGTGAAAGCAATTTGATATTACTAGGCTGTGTTCGTAATAATTTCATTGTGATTACTTAGATGTATGGGCCTCCTGAGAAACTTTTCTTCGGATAATCATCATAATTCAATTATTTCACGTGCATGCATCTCTTTCTTCTTGCTAAAAGCTGTTTGATTTTTGCATGTTAGTCGAAGATTCAAGATGAGTTAATAGCAAGAGAAATATCAATAAATGATGCAGAGGCTTCTATTCGGTACAAGCTCACAAAACGTCAGACACAGGAGGAGGTGAGTGTTTTTTTGAGAAGAGAAACAGACATTTCATTGATAAATGAAATAATGGGAAATAAAATTCCCATAAGGAATCATTACATGAAAGAAGTCCAATTGGAGATCAAAGAAGATAGACTATAG

mRNA sequence

ATGACGGAGGACAGTGACGTTAGGGTTTCTTCCGACGAACACATCGCAGTCCCCAACATTGATTCCTCTTCTCAAACAAAGCCAAGAAAGAAAAGAAAGTGGGATCAACCTGCGGAGTCCTTTCTTTCTACTGGTATTGCAGTTCCAGGGATCCTCCCATCATGCACCATGATGCCCCTTGGTGGGGTTGCTGTCGCCAGTGTGGCGGCCCTGGTACCGGTTTCTTCAGTGAACTGTGCAACCTTAACCCAGTCGAAGATTCAAGATGAGTTAATAGCAAGAGAAATATCAATAAATGATGCAGAGGCTTCTATTCGGTACAAGCTCACAAAACGTCAGACACAGGAGGAGGTGAGTGTTTTTTTGAGAAGAGAAACAGACATTTCATTGATAAATGAAATAATGGGAAATAAAATTCCCATAAGGAATCATTACATGAAAGAAGTCCAATTGGAGATCAAAGAAGATAGACTATAG

Coding sequence (CDS)

ATGACGGAGGACAGTGACGTTAGGGTTTCTTCCGACGAACACATCGCAGTCCCCAACATTGATTCCTCTTCTCAAACAAAGCCAAGAAAGAAAAGAAAGTGGGATCAACCTGCGGAGTCCTTTCTTTCTACTGGTATTGCAGTTCCAGGGATCCTCCCATCATGCACCATGATGCCCCTTGGTGGGGTTGCTGTCGCCAGTGTGGCGGCCCTGGTACCGGTTTCTTCAGTGAACTGTGCAACCTTAACCCAGTCGAAGATTCAAGATGAGTTAATAGCAAGAGAAATATCAATAAATGATGCAGAGGCTTCTATTCGGTACAAGCTCACAAAACGTCAGACACAGGAGGAGGTGAGTGTTTTTTTGAGAAGAGAAACAGACATTTCATTGATAAATGAAATAATGGGAAATAAAATTCCCATAAGGAATCATTACATGAAAGAAGTCCAATTGGAGATCAAAGAAGATAGACTATAG

Protein sequence

MTEDSDVRVSSDEHIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGILPSCTMMPLGGVAVASVAALVPVSSVNCATLTQSKIQDELIAREISINDAEASIRYKLTKRQTQEEVSVFLRRETDISLINEIMGNKIPIRNHYMKEVQLEIKEDRL

Homology

[Close]

BLAST of Lag0000661 vs. NCBI nr
Match: KAG7018181.1 (Protein RIK [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 196.1 bits (497), Expect = 2.4e-46
Identity = 105/118 (88.98%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 1   MTEDSDVRVSSDEHIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGILPSCTMMPL 60
           MTEDS VRVS DE IAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPG+LPS  M PL
Sbjct: 1   MTEDSGVRVSLDEPIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGVLPSYNMTPL 60

Query: 61  GGVAVASVAALVPVSSVNCATLTQSKIQDELIAREISINDAEASIRYKLTKRQTQEEV 119
           GGVAVASVAAL  VSSVNCAT+TQSKIQDELIAREISINDAE S+RYKLTKRQTQEE+
Sbjct: 61  GGVAVASVAALAQVSSVNCATITQSKIQDELIAREISINDAEPSVRYKLTKRQTQEEI 118

[Close]

BLAST of Lag0000661 vs. NCBI nr
Match: KAG6581700.1 (Protein RIK, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 196.1 bits (497), Expect = 2.4e-46
Identity = 105/118 (88.98%), Postives = 109/118 (92.37%), Query Frame = 0


Query: 1   MTEDSDVRVSSDEHIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGILPSCTMMPL 60
           MTEDS VRVS DE IAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPG+LPS  M PL
Sbjct: 1   MTEDSGVRVSLDEPIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGVLPSYNMTPL 60

Query: 61  GGVAVASVAALVPVSSVNCATLTQSKIQDELIAREISINDAEASIRYKLTKRQTQEEV 119
           GGVAVASVAAL  VSSVNCAT+TQSKIQDELIAREISINDAE S+RYKLTKRQTQEE+
Sbjct: 61  GGVAVASVAALAQVSSVNCATITQSKIQDELIAREISINDAEPSVRYKLTKRQTQEEI 118

[Close]

BLAST of Lag0000661 vs. NCBI nr
Match: XP_022955349.1 (protein RIK isoform X2 [Cucurbita moschata])

HSP 1 Score: 193.7 bits (491), Expect = 1.2e-45
Identity = 104/118 (88.14%), Postives = 108/118 (91.53%), Query Frame = 0


Query: 1   MTEDSDVRVSSDEHIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGILPSCTMMPL 60
           MTEDS VRVS DE  AVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPG+LPS  M PL
Sbjct: 1   MTEDSGVRVSLDEPSAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGVLPSYNMTPL 60

Query: 61  GGVAVASVAALVPVSSVNCATLTQSKIQDELIAREISINDAEASIRYKLTKRQTQEEV 119
           GGVAVASVAAL  VSSVNCAT+TQSKIQDELIAREISINDAE S+RYKLTKRQTQEE+
Sbjct: 61  GGVAVASVAALAQVSSVNCATITQSKIQDELIAREISINDAEPSVRYKLTKRQTQEEI 118

[Close]

BLAST of Lag0000661 vs. NCBI nr
Match: XP_022955348.1 (protein RIK isoform X1 [Cucurbita moschata])

HSP 1 Score: 193.7 bits (491), Expect = 1.2e-45
Identity = 104/118 (88.14%), Postives = 108/118 (91.53%), Query Frame = 0


Query: 1   MTEDSDVRVSSDEHIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGILPSCTMMPL 60
           MTEDS VRVS DE  AVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPG+LPS  M PL
Sbjct: 1   MTEDSGVRVSLDEPSAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGVLPSYNMTPL 60

Query: 61  GGVAVASVAALVPVSSVNCATLTQSKIQDELIAREISINDAEASIRYKLTKRQTQEEV 119
           GGVAVASVAAL  VSSVNCAT+TQSKIQDELIAREISINDAE S+RYKLTKRQTQEE+
Sbjct: 61  GGVAVASVAALAQVSSVNCATITQSKIQDELIAREISINDAEPSVRYKLTKRQTQEEI 118

[Close]

BLAST of Lag0000661 vs. NCBI nr
Match: XP_023514658.1 (protein RIK isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 193.0 bits (489), Expect = 2.0e-45
Identity = 104/118 (88.14%), Postives = 108/118 (91.53%), Query Frame = 0


Query: 1   MTEDSDVRVSSDEHIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGILPSCTMMPL 60
           MTEDS VRVS DE IAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPG+LPS  M  L
Sbjct: 1   MTEDSGVRVSLDEPIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVPGVLPSYNMTSL 60

Query: 61  GGVAVASVAALVPVSSVNCATLTQSKIQDELIAREISINDAEASIRYKLTKRQTQEEV 119
           GGVAVASVAAL  VSSVNCAT+TQSKIQDELIAREISINDAE S+RYKLTKRQTQEE+
Sbjct: 61  GGVAVASVAALAQVSSVNCATITQSKIQDELIAREISINDAEPSVRYKLTKRQTQEEI 118

[Close]

BLAST of Lag0000661 vs. ExPASy Swiss-Prot
Match: Q9LIA4 (Protein RIK OS=Arabidopsis thaliana OX=3702 GN=RIK PE=1 SV=2)

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-15
Identity = 69/171 (40.35%), Postives = 94/171 (54.97%), Query Frame = 0


Query: 1   MTEDSDVRVSSDEHIAVPNIDSS-----SQTKPRKKRKWDQPAESFLSTGIAVPGILPSC 60
           MTED+D          VP  DSS     S+T+ R+KRKWD+PAE  ++ G+A P +LP  
Sbjct: 1   MTEDND-------EARVPLSDSSTTNDASRTRQRRKRKWDKPAEQLVAAGVAFPQLLPLG 60

Query: 61  TMMPLGGVAVASVAALVPVSSVNCAT--LTQSKIQDE-LIAREISINDAEASIRYKLTKR 120
             M      V S++ L+   SV  A   + Q KIQDE +IAREI INDAEAS+R++LTKR
Sbjct: 61  NTM-----NVPSMSPLLQTLSVPLAVPKVNQPKIQDEVIIAREIVINDAEASLRHRLTKR 120

Query: 121 QTQEEVSVFLRRETDISLI--------NEIMGNKIPIRNHYMKEVQLEIKE 156
            TQE++    +R T   +I        N     + P+  H     QL++KE
Sbjct: 121 STQEDI----QRSTGAVVITRGKYRPPNAPPDGEKPLYLHISAAAQLQLKE 155

[Close]

BLAST of Lag0000661 vs. ExPASy Swiss-Prot
Match: Q32SG5 (Protein RIK OS=Zea mays OX=4577 PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-13
Identity = 57/143 (39.86%), Postives = 76/143 (53.15%), Query Frame = 0


Query: 1   MTEDSDVRVSSDEHIAVPNIDSSSQTKPRKKRKWDQPAESFLSTGIAVP----------G 60
           MTED   +V +DE  A     S  Q+  RKKRKWDQPAE  +S  +             G
Sbjct: 1   MTEDRAHKV-ADEPAA-----SGRQSPERKKRKWDQPAEDLVSAAVTAAAVSGMPVMNFG 60

Query: 61  ILPSCTMMPLGGVAVASVAALVPV---------------SSVNCATLTQSKIQDELIARE 119
            LP   +  +     A++ ++VPV               ++     L+Q+KI DE+IARE
Sbjct: 61  ALPGVVLPGVTAYGAATLPSVVPVPYSLPPHIAPSVLQNAAAAAQKLSQAKIPDEVIARE 120

The following BLAST results are available for this feature:

BLAST of Lag0000661 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7018181.1	2.4e-46	88.98	Protein RIK [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6581700.1	2.4e-46	88.98	Protein RIK, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022955349.1	1.2e-45	88.14	protein RIK isoform X2 [Cucurbita moschata]	[more]
XP_022955348.1	1.2e-45	88.14	protein RIK isoform X1 [Cucurbita moschata]	[more]
XP_023514658.1	2.0e-45	88.14	protein RIK isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0000661 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LIA4	1.3e-15	40.35	Protein RIK OS=Arabidopsis thaliana OX=3702 GN=RIK PE=1 SV=2	[more]
Q32SG5	1.2e-13	39.86	Protein RIK OS=Zea mays OX=4577 PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
IPR031121	KH domain containing protein RIK/BLOM7	PANTHER	PTHR15744	BLOM7	coord: 2..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0000661.1	Lag0000661.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003723	RNA binding