Lag0000642 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0000642
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr4: 11927604 .. 11928158 (+)
RNA-Seq ExpressionLag0000642
SyntenyLag0000642
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAGATGGGATCACGAGCAGAGGAAGTGTGGGTTAAAGTTACCTATGAAAAGTTGCCTGAATTTTGTTACGACCGCGGGAAAGTTGGGCACGTGAAGCAAGAATGCGAGGAAAATGATCAACCAGATGTAGACCAACAATTTGAGGAATGGATGAGGGCCACCCCTATCTTAGGTGGGTCGAATAGAAACAAAACCCAAGACATTAGAATGGGACCATCATGGGGGAGAGGAAGAGGAAGGGGAACCGATTTCCAAAGATTCAGAGACGATTGGAGAGGTGGAAGAGGAAGCAAGGATACATGGAGAGGAAATGATCATCCAAAAGCTTCCAACCAAGCTGTCACCGGAGAAAGTCCGAAGAAAAGTCTCGAATCCCAAAACCAGGAGCTTCCAACGGCTAGTAAGGTGTCAGAGAAAAGTAAGGAATTAGCTGAAAAAACAGGACCACCGTCAGGAAAACAGGGTACGACAAGTCAAATAATCAAGAAAAGTAACTCAAGAGAGATGATGGAAGTCAGCAAAGATAAAGGAATAAATATTAATTCCTAG

mRNA sequence

ATGGTGAAGATGGGATCACGAGCAGAGGAAGTGTGGGTTAAAGTTACCTATGAAAAGTTGCCTGAATTTTGTTACGACCGCGGGAAAGTTGGGCACGTGAAGCAAGAATGCGAGGAAAATGATCAACCAGATGTAGACCAACAATTTGAGGAATGGATGAGGGCCACCCCTATCTTAGGTGGGTCGAATAGAAACAAAACCCAAGACATTAGAATGGGACCATCATGGGGGAGAGGAAGAGGAAGGGGAACCGATTTCCAAAGATTCAGAGACGATTGGAGAGGTGGAAGAGGAAGCAAGGATACATGGAGAGGAAATGATCATCCAAAAGCTTCCAACCAAGCTGTCACCGGAGAAAGTCCGAAGAAAAGTCTCGAATCCCAAAACCAGGAGCTTCCAACGGCTAGTAAGGTGTCAGAGAAAAGTAAGGAATTAGCTGAAAAAACAGGACCACCGTCAGGAAAACAGGGTACGACAAGTCAAATAATCAAGAAAAGTAACTCAAGAGAGATGATGGAAGTCAGCAAAGATAAAGGAATAAATATTAATTCCTAG

Coding sequence (CDS)

ATGGTGAAGATGGGATCACGAGCAGAGGAAGTGTGGGTTAAAGTTACCTATGAAAAGTTGCCTGAATTTTGTTACGACCGCGGGAAAGTTGGGCACGTGAAGCAAGAATGCGAGGAAAATGATCAACCAGATGTAGACCAACAATTTGAGGAATGGATGAGGGCCACCCCTATCTTAGGTGGGTCGAATAGAAACAAAACCCAAGACATTAGAATGGGACCATCATGGGGGAGAGGAAGAGGAAGGGGAACCGATTTCCAAAGATTCAGAGACGATTGGAGAGGTGGAAGAGGAAGCAAGGATACATGGAGAGGAAATGATCATCCAAAAGCTTCCAACCAAGCTGTCACCGGAGAAAGTCCGAAGAAAAGTCTCGAATCCCAAAACCAGGAGCTTCCAACGGCTAGTAAGGTGTCAGAGAAAAGTAAGGAATTAGCTGAAAAAACAGGACCACCGTCAGGAAAACAGGGTACGACAAGTCAAATAATCAAGAAAAGTAACTCAAGAGAGATGATGGAAGTCAGCAAAGATAAAGGAATAAATATTAATTCCTAG

Protein sequence

MVKMGSRAEEVWVKVTYEKLPEFCYDRGKVGHVKQECEENDQPDVDQQFEEWMRATPILGGSNRNKTQDIRMGPSWGRGRGRGTDFQRFRDDWRGGRGSKDTWRGNDHPKASNQAVTGESPKKSLESQNQELPTASKVSEKSKELAEKTGPPSGKQGTTSQIIKKSNSREMMEVSKDKGININS
Homology
BLAST of Lag0000642 vs. NCBI nr
Match: KAA0046998.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK04784.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 7.1e-10
Identity = 36/91 (39.56%), Postives = 56/91 (61.54%), Query Frame = 0

Query: 3   KMGSRAEEVWVKVTYEKLPEFCYDRGKVGHVKQECEE-NDQPDVDQQFEEWMRATPILGG 62
           K+G  A+E W+ V+YEKLP+FCY  G+VGHV QEC+E  D  +  Q+F  W+R +     
Sbjct: 45  KLGVMAKEKWIPVSYEKLPDFCYKCGRVGHVVQECKEVGDDGEEGQRFGVWLRKSQTSQS 104

Query: 63  SNRNKTQDIRMGPSWGRGRGRGTDFQRFRDD 93
            ++ + +++R   +  RGRG G   + F+ D
Sbjct: 105 ISKGRREEVRSQFTIDRGRGEGKGIEAFKRD 135

BLAST of Lag0000642 vs. NCBI nr
Match: XP_022149484.1 (uncharacterized protein LOC111017902 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 8.1e-06
Identity = 43/150 (28.67%), Postives = 78/150 (52.00%), Query Frame = 0

Query: 6   SRAEEVWVKVTYEKLPEFCYDRGKVGHVKQECEENDQ---PDVDQQFEEWMRATPILGGS 65
           S  +++W  + YEKLP+FCY+ GK+GH  +ECE+  +    +  +Q+ +W+RAT +    
Sbjct: 189 SDGKDIWCPLRYEKLPDFCYECGKIGHSGRECEQRSKVVTTNSPEQYGDWLRATLLKKSV 248

Query: 66  NRNKTQDIRMGPSWGRGR----GRGTDFQRFRDDWRGGRGSKDTWRGNDHPKASNQAVTG 125
           +  + +    G  +GRG     GRG      R DW   R   + WR  D P++S++    
Sbjct: 249 SHPEEEVFWRGGRFGRGHQVNGGRGG-----RGDW---RRRDENWRDIDGPESSHRRAVE 308

Query: 126 ESPKKSLESQNQELPTASKVSEKSKELAEK 149
           E   +     N+E  TA++++ +  ++  +
Sbjct: 309 EGVDR---VPNEESVTAAEITLRQAKITSQ 327

BLAST of Lag0000642 vs. NCBI nr
Match: PNX92709.1 (cysteine desulfurase mitochondrial-like [Trifolium pratense])

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-04
Identity = 24/65 (36.92%), Postives = 38/65 (58.46%), Query Frame = 0

Query: 3   KMGSRAEEVWVKVTYEKLPEFCYDRGKVGHVKQECEENDQPDV---------DQQFEEWM 59
           K+  + +++WV   YE+LP FC+  G++GH  ++CEE D  D          DQ F  W+
Sbjct: 179 KLSFQGKDIWVDYKYERLPNFCFACGRIGHQMRDCEEVDDHDTDAYSELEEKDQAFGPWL 238

BLAST of Lag0000642 vs. NCBI nr
Match: GER41574.1 (cellular nucleic acid-binding protein [Striga asiatica])

HSP 1 Score: 56.6 bits (135), Expect = 2.6e-04
Identity = 26/66 (39.39%), Postives = 43/66 (65.15%), Query Frame = 0

Query: 2   VKMGSRAEEVWVKVTYEKLPEFCYDRGKVGHVKQECEENDQPDVDQQFEEWMRA-TPILG 61
           V++ ++A+EV + + YE+LP+FCY  G++GHV +ECE  +    +  F  W++A T I G
Sbjct: 50  VRVENQADEVIILLVYERLPDFCYLCGRIGHVLKECEATEGNSENLPFGSWLKASTHITG 109

Query: 62  GSNRNK 67
             NR +
Sbjct: 110 KKNREE 115

BLAST of Lag0000642 vs. NCBI nr
Match: TXG48193.1 (hypothetical protein EZV62_027487 [Acer yangbiense])

HSP 1 Score: 56.2 bits (134), Expect = 3.4e-04
Identity = 44/134 (32.84%), Postives = 71/134 (52.99%), Query Frame = 0

Query: 2   VKMGSRAEEVWVKVTYEKLPEFCYDRGKVGHVKQECEEND--QPDVDQQ---FEEWMRAT 61
           +K+G   E   V + YE+LP+FC+  G++GH  +EC + D  +  +D Q   F  WMRAT
Sbjct: 187 IKLGKYEEITMVALKYERLPDFCFACGRIGHSVRECLDEDAKRAALDGQQTKFGSWMRAT 246

Query: 62  PILGGSNRNKTQDIRMGPSWGRGRGRGTDFQRFRDDWRGGRGSKDTWRGNDHP-KASNQA 121
           PI    +++KT+ I +       RGR  +  R  +    G GS     GN  P K+ + +
Sbjct: 247 PI----DKSKTKSISLTTGSSSERGRSVEGSRELE----GDGSLSMRSGNVAPQKSRSDS 306

Query: 122 VTGESPKKSLESQN 130
           V+  + +K+  S+N
Sbjct: 307 VSQVAAEKTTTSEN 312

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0046998.17.1e-1039.56reverse transcriptase [Cucumis melo var. makuwa] >TYK04784.1 reverse transcripta... [more]
XP_022149484.18.1e-0628.67uncharacterized protein LOC111017902 [Momordica charantia][more]
PNX92709.11.2e-0436.92cysteine desulfurase mitochondrial-like [Trifolium pratense][more]
GER41574.12.6e-0439.39cellular nucleic acid-binding protein [Striga asiatica][more]
TXG48193.13.4e-0432.84hypothetical protein EZV62_027487 [Acer yangbiense][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 1..38
e-value: 3.9E-8
score: 32.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..184
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..136
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 152..168

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0000642.1Lag0000642.1mRNA